Wall clock time and date at job start Tue Mar 31 2020 21:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 119.99992 * 2 1 4 4 C 1.53003 * 109.47369 * 269.99901 * 3 2 1 5 5 C 1.52996 * 109.47142 * 295.00260 * 4 3 2 6 6 C 1.53003 * 109.47142 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47150 * 59.99925 * 6 5 4 8 8 C 1.52996 * 109.47160 * 300.00064 * 7 6 5 9 9 C 1.52999 * 109.47150 * 175.00185 * 4 3 2 10 10 C 1.34774 * 119.99624 * 180.02562 * 2 1 3 11 11 O 1.21355 * 119.99756 * 183.76175 * 10 2 1 12 12 C 1.49448 * 120.00209 * 3.76252 * 10 2 1 13 13 O 1.21347 * 120.00140 * 354.14547 * 12 10 2 14 14 N 1.34779 * 120.00335 * 174.14273 * 12 10 2 15 15 C 1.47023 * 125.64191 * 359.95792 * 14 12 10 16 16 C 1.54380 * 107.28601 * 181.12736 * 15 14 12 17 17 C 1.55160 * 102.91925 * 22.14065 * 16 15 14 18 18 O 1.42903 * 111.00329 * 82.63673 * 17 16 15 19 19 C 1.50697 * 111.00436 * 206.45426 * 17 16 15 20 20 H 1.08004 * 119.99909 * 356.81795 * 19 17 16 21 21 C 1.37877 * 120.00139 * 176.54277 * 19 17 16 22 22 N 1.31517 * 119.99872 * 0.27718 * 21 19 17 23 23 Si 1.86796 * 119.99836 * 180.27129 * 21 19 17 24 24 H 1.48504 * 109.47298 * 60.00684 * 23 21 19 25 25 H 1.48507 * 109.46814 * 180.02562 * 23 21 19 26 26 H 1.48492 * 109.47480 * 300.00175 * 23 21 19 27 27 C 1.47424 * 125.65266 * 180.02562 * 14 12 10 28 28 H 1.08996 * 109.47303 * 263.99585 * 1 2 3 29 29 H 1.09005 * 109.46939 * 23.99190 * 1 2 3 30 30 H 1.09001 * 109.47062 * 143.98777 * 1 2 3 31 31 H 1.09000 * 109.47455 * 30.00236 * 3 2 1 32 32 H 1.09008 * 109.46829 * 150.00287 * 3 2 1 33 33 H 1.08997 * 109.47011 * 54.99876 * 4 3 2 34 34 H 1.09005 * 109.47450 * 299.99585 * 5 4 3 35 35 H 1.08999 * 109.47409 * 60.00029 * 5 4 3 36 36 H 1.09005 * 109.47099 * 299.99895 * 6 5 4 37 37 H 1.09001 * 109.47408 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.46850 * 180.02562 * 7 6 5 39 39 H 1.08999 * 109.46778 * 60.00609 * 7 6 5 40 40 H 1.09005 * 109.47038 * 299.99999 * 8 7 6 41 41 H 1.09000 * 109.46981 * 180.02562 * 8 7 6 42 42 H 1.08994 * 109.47307 * 300.00040 * 9 4 3 43 43 H 1.09005 * 109.47221 * 60.00549 * 9 4 3 44 44 H 1.08996 * 109.88561 * 300.51015 * 15 14 12 45 45 H 1.08996 * 109.88721 * 61.68491 * 15 14 12 46 46 H 1.09001 * 110.70586 * 263.79777 * 16 15 14 47 47 H 1.09002 * 110.75471 * 140.50587 * 16 15 14 48 48 H 0.96706 * 113.99429 * 183.17755 * 18 17 16 49 49 H 0.96992 * 119.99706 * 180.02562 * 22 21 19 50 50 H 1.09000 * 110.36170 * 36.99870 * 27 14 12 51 51 H 1.08995 * 110.36780 * 274.67418 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.3823 0.7062 -2.1265 6 6 3.6369 1.1476 -3.5692 7 6 4.2902 2.5311 -3.5716 8 6 3.3604 3.5353 -2.8875 9 6 3.1061 3.0938 -1.4443 10 6 2.1388 -1.1672 -0.0005 11 8 3.3504 -1.1684 0.0684 12 6 1.3940 -2.4600 -0.0860 13 8 0.1811 -2.4652 -0.0479 14 7 2.0692 -3.6203 -0.2056 15 6 3.5318 -3.7582 -0.2648 16 6 3.8446 -5.2608 -0.4305 17 6 2.5264 -5.8264 -1.0221 18 8 2.4731 -5.6279 -2.4363 19 6 2.3613 -7.2841 -0.6775 20 1 3.1378 -7.8018 -0.1339 21 6 1.2164 -7.9554 -1.0510 22 7 0.2708 -7.3250 -1.7128 23 14 1.0085 -9.7603 -0.6171 24 1 1.0546 -9.9233 0.8583 25 1 -0.2989 -10.2449 -1.1284 26 1 2.1044 -10.5479 -1.2366 27 6 1.4638 -4.9611 -0.3002 28 1 -0.3634 -0.1075 1.0220 29 1 -0.3633 0.9389 -0.4179 30 1 -0.3633 -0.8313 -0.6042 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 1.5062 1.7549 -1.9815 34 1 4.3287 0.6616 -1.5876 35 1 2.9167 -0.2793 -2.1253 36 1 2.6903 1.1918 -4.1081 37 1 4.2989 0.4319 -4.0568 38 1 4.4711 2.8457 -4.5994 39 1 5.2367 2.4868 -3.0329 40 1 2.4138 3.5795 -3.4264 41 1 3.8256 4.5210 -2.8896 42 1 2.4438 3.8092 -0.9570 43 1 4.0525 3.0492 -0.9053 44 1 3.9224 -3.2027 -1.1174 45 1 3.9769 -3.3863 0.6580 46 1 4.0614 -5.7181 0.5349 47 1 4.6730 -5.4088 -1.1233 48 1 1.6466 -5.9214 -2.8437 49 1 -0.5348 -7.7972 -1.9752 50 1 0.5450 -4.9220 -0.8854 51 1 1.2640 -5.3582 0.6951 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118183421.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:14 Heat of formation + Delta-G solvation = -124.387573 kcal Electronic energy + Delta-G solvation = -31415.264275 eV Core-core repulsion = 27314.219645 eV Total energy + Delta-G solvation = -4101.044630 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.65293 -39.07713 -38.03743 -37.23395 -35.64651 -34.15335 -32.22086 -31.82379 -30.82683 -30.22402 -27.96051 -27.07692 -26.69940 -25.30475 -23.37778 -22.64965 -22.01948 -20.78937 -19.83461 -19.66021 -18.79982 -17.24638 -16.77057 -16.68020 -16.27929 -15.45171 -15.32996 -15.12778 -14.74875 -14.44274 -14.33751 -14.19375 -14.15776 -13.86004 -13.14531 -13.07154 -12.91050 -12.77081 -12.59763 -12.34065 -12.27304 -12.23370 -12.10970 -11.81328 -11.65143 -11.49156 -11.24321 -11.07833 -11.04207 -10.92881 -10.70404 -10.56289 -10.52667 -10.50781 -10.33317 -10.20893 -10.12568 -9.38826 -8.94649 -8.69808 -8.63818 -8.42063 -7.86464 -6.31420 -4.40759 1.83944 2.62088 3.20839 3.26520 3.28580 3.60535 3.78763 4.24368 4.48035 4.55111 4.61110 4.64555 4.92824 4.96585 5.07877 5.18816 5.24278 5.28362 5.37155 5.41062 5.45733 5.48992 5.49410 5.61000 5.69664 5.77835 5.80272 5.85738 5.89253 5.99636 6.02623 6.05253 6.05934 6.10757 6.18046 6.28056 6.30859 6.41851 6.48375 6.51505 6.72931 6.81319 6.86432 7.15659 7.19771 7.30038 7.71214 7.84190 7.99006 8.08935 8.47919 8.63011 9.28110 9.38731 10.75897 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020155 B = 0.002845 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.875814 B = 9840.481402 C =10355.349036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.592 5.592 3 C 0.117 3.883 4 C -0.103 4.103 5 C -0.107 4.107 6 C -0.120 4.120 7 C -0.119 4.119 8 C -0.117 4.117 9 C -0.110 4.110 10 C 0.509 3.491 11 O -0.515 6.515 12 C 0.507 3.493 13 O -0.534 6.534 14 N -0.573 5.573 15 C 0.112 3.888 16 C -0.122 4.122 17 C 0.249 3.751 18 O -0.582 6.582 19 C -0.537 4.537 20 H 0.068 0.932 21 C 0.071 3.929 22 N -0.895 5.895 23 Si 0.905 3.095 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.091 3.909 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.383 0.617 49 H 0.271 0.729 50 H 0.088 0.912 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.353 19.279 0.583 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.326 5.326 3 C -0.006 4.006 4 C -0.122 4.122 5 C -0.145 4.145 6 C -0.158 4.158 7 C -0.157 4.157 8 C -0.155 4.155 9 C -0.149 4.149 10 C 0.292 3.708 11 O -0.391 6.391 12 C 0.289 3.711 13 O -0.413 6.413 14 N -0.305 5.305 15 C -0.010 4.010 16 C -0.160 4.160 17 C 0.209 3.791 18 O -0.391 6.391 19 C -0.576 4.576 20 H 0.086 0.914 21 C -0.132 4.132 22 N -0.534 5.534 23 Si 0.732 3.268 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.030 4.030 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.128 0.872 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.234 0.766 49 H 0.081 0.919 50 H 0.107 0.893 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.744 19.538 0.681 19.905 hybrid contribution -0.923 -1.103 0.174 1.449 sum 2.821 18.435 0.855 18.669 Atomic orbital electron populations 1.22382 0.77866 1.03967 1.03353 1.47658 1.08067 1.05029 1.71853 1.21645 0.97928 0.84150 0.96840 1.21580 0.99456 0.95261 0.95916 1.21544 0.99738 0.98139 0.95076 1.21546 1.00615 0.96444 0.97182 1.21536 0.98764 0.95212 1.00140 1.21513 0.99799 0.98321 0.95830 1.21513 1.00769 0.95590 0.96983 1.20342 0.87567 0.85259 0.77585 1.90715 1.13443 1.87140 1.47774 1.19626 0.87214 0.84267 0.79956 1.90612 1.13232 1.86036 1.51470 1.48662 1.08922 1.06606 1.66272 1.22135 0.79547 0.97945 1.01403 1.22726 0.99562 0.92575 1.01108 1.19609 0.88160 0.92021 0.79337 1.86111 1.44257 1.86820 1.21899 1.21446 1.03922 0.94513 1.37669 0.91426 1.25086 0.95178 0.99101 0.93868 1.69638 1.08244 1.37176 1.38304 0.86437 0.77466 0.83951 0.78914 1.20003 1.21080 1.19964 1.23483 1.00147 0.77885 1.01442 0.92515 0.92093 0.87217 0.90376 0.89590 0.91064 0.91397 0.92208 0.92332 0.91994 0.92347 0.92034 0.92126 0.92181 0.92048 0.91717 0.91436 0.91585 0.90409 0.90554 0.76627 0.91861 0.89337 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 9.56 59.85 0.57 1.40 16 2 N -0.59 -8.12 2.76 -182.08 -0.50 -8.62 16 3 C 0.12 1.26 4.97 -4.04 -0.02 1.24 16 4 C -0.10 -1.04 2.39 -90.62 -0.22 -1.26 16 5 C -0.11 -1.32 4.02 -26.73 -0.11 -1.43 16 6 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 7 C -0.12 -1.06 5.92 -26.73 -0.16 -1.21 16 8 C -0.12 -0.93 5.92 -26.70 -0.16 -1.08 16 9 C -0.11 -0.90 5.21 -26.70 -0.14 -1.04 16 10 C 0.51 8.69 6.15 -11.59 -0.07 8.62 16 11 O -0.52 -9.18 12.26 5.49 0.07 -9.11 16 12 C 0.51 10.13 7.80 -11.58 -0.09 10.04 16 13 O -0.53 -11.27 13.39 5.50 0.07 -11.20 16 14 N -0.57 -12.09 3.33 -171.01 -0.57 -12.66 16 15 C 0.11 2.17 5.49 -3.03 -0.02 2.16 16 16 C -0.12 -2.48 6.13 -24.86 -0.15 -2.64 16 17 C 0.25 6.00 0.88 -89.63 -0.08 5.92 16 18 O -0.58 -14.78 13.17 -35.23 -0.46 -15.25 16 19 C -0.54 -13.78 8.26 -34.44 -0.28 -14.07 16 20 H 0.07 1.70 7.78 -52.48 -0.41 1.29 16 21 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 22 N -0.89 -23.37 10.69 55.43 0.59 -22.78 16 23 Si 0.91 20.08 29.54 -169.99 -5.02 15.06 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 25 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 C 0.09 2.15 5.50 -2.54 -0.01 2.14 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.58 8.03 -51.93 -0.42 0.16 16 30 H 0.11 1.66 5.34 -51.94 -0.28 1.39 16 31 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.09 1.01 7.37 -51.92 -0.38 0.63 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 35 H 0.06 0.91 6.13 -51.93 -0.32 0.60 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 1.32 7.72 -51.93 -0.40 0.92 16 45 H 0.07 1.19 7.58 -51.93 -0.39 0.80 16 46 H 0.08 1.48 8.03 -51.93 -0.42 1.07 16 47 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 48 H 0.38 9.96 7.26 45.56 0.33 10.29 16 49 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 50 H 0.09 2.30 7.47 -51.93 -0.39 1.92 16 51 H 0.07 1.61 8.03 -51.93 -0.42 1.19 16 LS Contribution 390.61 15.07 5.89 5.89 Total: -1.00 -27.70 390.61 -9.24 -36.94 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -8.11 Total: 12.68 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -1.19 Total: 9.05 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.48 Total: -44.06 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.32 Total: -35.55 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -27.70 -9.24 -36.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118183421.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.450 kcal (2) G-P(sol) polarization free energy of solvation -27.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds