Wall clock time and date at job start Tue Mar 31 2020 21:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00184 * 2 1 4 4 C 1.53005 * 109.47180 * 89.99648 * 3 2 1 5 5 O 1.42897 * 109.46799 * 65.00439 * 4 3 2 6 6 C 1.42899 * 113.99960 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.47369 * 179.97438 * 6 5 4 8 8 C 1.52998 * 117.51852 * 116.28263 * 7 6 5 9 9 C 1.52999 * 117.49973 * 184.91422 * 7 6 5 10 10 C 1.34784 * 120.00230 * 179.97438 * 2 1 3 11 11 O 1.21350 * 119.99795 * 184.56860 * 10 2 1 12 12 C 1.49445 * 119.99737 * 4.56864 * 10 2 1 13 13 O 1.21347 * 120.00189 * 4.66156 * 12 10 2 14 14 N 1.34774 * 120.00001 * 184.66395 * 12 10 2 15 15 C 1.46932 * 120.63032 * 352.33308 * 14 12 10 16 16 C 1.53189 * 108.77809 * 233.58982 * 15 14 12 17 17 C 1.53039 * 109.31207 * 305.36458 * 16 15 14 18 18 C 1.53036 * 109.53759 * 61.36865 * 17 16 15 19 19 H 1.08998 * 109.50172 * 58.58213 * 18 17 16 20 20 C 1.50699 * 109.49768 * 178.68415 * 18 17 16 21 21 H 1.07997 * 120.00070 * 359.97438 * 20 18 17 22 22 C 1.37879 * 120.00244 * 180.02562 * 20 18 17 23 23 N 1.31517 * 119.99988 * 359.97438 * 22 20 18 24 24 Si 1.86804 * 120.00332 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47064 * 89.99392 * 24 22 20 26 26 H 1.48495 * 109.46949 * 209.99696 * 24 22 20 27 27 H 1.48498 * 109.46680 * 329.99606 * 24 22 20 28 28 C 1.46927 * 120.63482 * 172.06021 * 14 12 10 29 29 H 1.09005 * 109.46796 * 96.04193 * 1 2 3 30 30 H 1.09005 * 109.46562 * 216.03539 * 1 2 3 31 31 H 1.08993 * 109.47177 * 336.03214 * 1 2 3 32 32 H 1.09006 * 109.46732 * 330.00304 * 3 2 1 33 33 H 1.08992 * 109.47528 * 209.99922 * 3 2 1 34 34 H 1.09003 * 109.46923 * 305.00625 * 4 3 2 35 35 H 1.09001 * 109.47249 * 185.00200 * 4 3 2 36 36 H 1.08999 * 109.47306 * 59.99807 * 6 5 4 37 37 H 1.08998 * 109.47329 * 299.99932 * 6 5 4 38 38 H 1.09003 * 115.54966 * 330.58135 * 7 6 5 39 39 H 1.09000 * 117.50249 * 214.97506 * 8 7 6 40 40 H 1.08999 * 117.49716 * 359.97438 * 8 7 6 41 41 H 1.08998 * 117.49739 * 359.97218 * 9 7 6 42 42 H 1.08998 * 117.49798 * 144.99757 * 9 7 6 43 43 H 1.08997 * 109.58650 * 353.38317 * 15 14 12 44 44 H 1.09001 * 109.58412 * 113.65847 * 15 14 12 45 45 H 1.08994 * 109.49488 * 65.31876 * 16 15 14 46 46 H 1.08997 * 109.49303 * 185.41409 * 16 15 14 47 47 H 1.09005 * 109.46052 * 181.38538 * 17 16 15 48 48 H 1.09005 * 109.46184 * 301.35823 * 17 16 15 49 49 H 0.96992 * 120.00438 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.58575 * 246.20153 * 28 14 12 51 51 H 1.09003 * 109.58365 * 6.62313 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 8 3.3209 0.7725 2.0814 6 6 3.6239 1.0934 3.4405 7 6 4.5550 0.0270 4.0210 8 6 5.9564 0.4686 4.4476 9 6 4.9059 0.1284 5.5067 10 6 2.1389 -1.1672 0.0005 11 8 3.3496 -1.1688 0.0842 12 6 1.3953 -2.4595 -0.1020 13 8 0.1936 -2.4562 -0.2707 14 7 2.0592 -3.6284 -0.0070 15 6 3.5279 -3.6544 0.0289 16 6 4.0313 -4.6011 -1.0652 17 6 3.3739 -5.9720 -0.8901 18 6 1.8564 -5.8338 -1.0317 19 1 1.6187 -5.4172 -2.0105 20 6 1.2126 -7.1891 -0.8913 21 1 1.8244 -8.0622 -0.7187 22 6 -0.1573 -7.3146 -0.9841 23 7 -0.9022 -6.2514 -1.1947 24 14 -0.9554 -8.9945 -0.8093 25 1 -1.2784 -9.2429 0.6186 26 1 -2.2030 -9.0358 -1.6136 27 1 -0.0190 -10.0401 -1.2942 28 6 1.3282 -4.9007 0.0685 29 1 -0.3633 -0.1082 -1.0220 30 1 -0.3633 -0.8311 0.6046 31 1 -0.3633 0.9390 0.4174 32 1 1.6084 2.0284 -0.5138 33 1 3.1499 1.1384 -0.5138 34 1 1.5061 1.7549 1.9815 35 1 2.9181 2.6960 1.4439 36 1 2.7018 1.1248 4.0208 37 1 4.1136 2.0662 3.4837 38 1 4.4495 -0.9711 3.5957 39 1 6.7729 -0.2390 4.3031 40 1 6.2154 1.5189 4.3145 41 1 4.4738 0.9551 6.0706 42 1 5.0312 -0.8029 6.0589 43 1 3.9156 -2.6514 -0.1489 44 1 3.8633 -4.0081 1.0038 45 1 3.7731 -4.1961 -2.0436 46 1 5.1136 -4.7040 -0.9875 47 1 3.7491 -6.6547 -1.6526 48 1 3.6120 -6.3653 0.0982 49 1 -1.8660 -6.3396 -1.2597 50 1 1.4879 -5.3563 1.0458 51 1 0.2640 -4.7202 -0.0833 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118454334.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:02 Heat of formation + Delta-G solvation = -63.901692 kcal Electronic energy + Delta-G solvation = -31065.064401 eV Core-core repulsion = 26966.642635 eV Total energy + Delta-G solvation = -4098.421765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.51214 -38.74565 -38.08268 -36.94240 -36.70499 -35.34090 -33.16249 -31.66823 -30.49823 -29.65553 -27.02730 -26.81967 -25.55790 -24.86324 -23.53827 -22.59952 -21.77447 -21.38243 -20.78359 -19.51261 -18.49985 -17.16251 -16.89065 -16.66584 -16.09754 -16.03329 -15.78564 -15.42819 -15.22346 -14.58597 -14.47586 -14.32083 -13.99220 -13.66557 -13.29798 -13.23361 -12.82416 -12.79146 -12.71771 -12.52533 -12.41763 -12.18043 -11.90441 -11.78818 -11.72860 -11.68042 -11.20593 -11.11544 -10.95007 -10.63457 -10.60142 -10.41949 -10.39669 -10.23085 -9.90514 -9.71067 -9.61828 -9.10374 -9.05147 -8.70671 -8.43487 -8.25269 -7.71163 -5.97851 -4.06193 1.97820 2.72090 3.31851 3.32258 3.39091 3.41932 3.69106 3.77697 3.95492 4.44375 4.56390 4.67693 4.70649 4.79043 4.93916 4.95833 5.06495 5.09599 5.25121 5.27215 5.31508 5.31991 5.39201 5.45931 5.62969 5.66696 5.73406 5.76604 5.82014 5.87617 5.97373 6.05659 6.10607 6.29059 6.38087 6.45819 6.63348 6.68335 6.79160 6.93230 7.04655 7.11694 7.12595 7.27252 7.29408 7.63936 7.88073 8.00557 8.09523 8.28604 8.41328 8.70147 8.97766 9.58953 11.07364 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013389 B = 0.003060 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.705332 B = 9148.188450 C = 9998.404046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.593 5.593 3 C 0.116 3.884 4 C 0.045 3.955 5 O -0.362 6.362 6 C 0.094 3.906 7 C -0.149 4.149 8 C -0.176 4.176 9 C -0.177 4.177 10 C 0.512 3.488 11 O -0.497 6.497 12 C 0.493 3.507 13 O -0.520 6.520 14 N -0.569 5.569 15 C 0.056 3.944 16 C -0.131 4.131 17 C -0.113 4.113 18 C 0.042 3.958 19 H 0.030 0.970 20 C -0.519 4.519 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.881 5.881 24 Si 0.892 3.108 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.109 3.891 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.045 0.955 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.143 0.857 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.049 0.951 48 H 0.048 0.952 49 H 0.263 0.737 50 H 0.046 0.954 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.267 19.045 8.060 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.327 5.327 3 C -0.007 4.007 4 C -0.033 4.033 5 O -0.280 6.280 6 C 0.017 3.983 7 C -0.167 4.167 8 C -0.213 4.213 9 C -0.214 4.214 10 C 0.297 3.703 11 O -0.373 6.373 12 C 0.275 3.725 13 O -0.398 6.398 14 N -0.300 5.300 15 C -0.065 4.065 16 C -0.169 4.169 17 C -0.150 4.150 18 C 0.023 3.977 19 H 0.048 0.952 20 C -0.558 4.558 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.518 5.518 24 Si 0.720 3.280 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.011 4.011 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.134 0.866 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.116 0.884 43 H 0.159 0.841 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.073 0.927 50 H 0.064 0.936 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.141 18.912 7.893 22.051 hybrid contribution -0.663 -0.728 0.320 1.035 sum 7.478 18.184 8.213 21.308 Atomic orbital electron populations 1.22168 0.77724 1.02873 1.03549 1.47649 1.07901 1.04916 1.72242 1.21576 0.98593 0.85354 0.95137 1.22940 0.93631 0.92379 0.94378 1.88122 1.66939 1.48753 1.24215 1.21948 0.97005 0.95931 0.83405 1.22125 0.96791 1.01167 0.96641 1.23036 0.92766 1.02058 1.03460 1.22966 1.03625 1.03433 0.91338 1.20673 0.87509 0.85412 0.76743 1.90331 1.13863 1.85136 1.47953 1.19831 0.87537 0.84943 0.80203 1.90713 1.14075 1.86522 1.48456 1.48423 1.07740 1.06472 1.67408 1.23011 0.79565 1.05479 0.98493 1.21914 0.98950 0.97230 0.98777 1.21660 0.98630 0.94435 1.00310 1.19024 0.89320 0.94628 0.94748 0.95219 1.21105 0.91715 0.92790 1.50166 0.92348 1.25059 0.97531 0.96615 0.94852 1.69892 1.05438 1.28084 1.48427 0.86590 0.78872 0.84492 0.78037 1.20671 1.21229 1.19942 1.22521 1.00140 0.79559 0.98865 0.91926 0.88519 0.92306 0.88695 0.88823 0.93259 0.92591 0.93399 0.93638 0.86579 0.88580 0.88917 0.88907 0.88403 0.84112 0.92775 0.92509 0.92301 0.93195 0.93306 0.92715 0.93576 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 9.25 59.85 0.55 1.56 16 2 N -0.59 -8.25 2.86 -182.08 -0.52 -8.77 16 3 C 0.12 1.20 5.82 -4.04 -0.02 1.18 16 4 C 0.04 0.43 6.28 37.16 0.23 0.67 16 5 O -0.36 -4.67 8.94 -47.85 -0.43 -5.10 16 6 C 0.09 0.98 6.22 37.16 0.23 1.21 16 7 C -0.15 -1.60 6.06 -90.62 -0.55 -2.15 16 8 C -0.18 -1.57 10.18 -26.73 -0.27 -1.84 16 9 C -0.18 -1.50 10.25 -26.73 -0.27 -1.78 16 10 C 0.51 8.97 7.35 -11.58 -0.09 8.88 16 11 O -0.50 -8.97 11.61 -7.13 -0.08 -9.05 16 12 C 0.49 10.27 7.58 -11.59 -0.09 10.18 16 13 O -0.52 -11.83 12.76 5.50 0.07 -11.76 16 14 N -0.57 -12.26 2.97 -173.01 -0.51 -12.77 16 15 C 0.06 1.06 6.14 -3.71 -0.02 1.03 16 16 C -0.13 -2.41 6.08 -26.61 -0.16 -2.57 16 17 C -0.11 -2.39 5.10 -26.69 -0.14 -2.53 16 18 C 0.04 1.07 2.26 -91.43 -0.21 0.86 16 19 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 20 C -0.52 -14.26 8.56 -34.44 -0.29 -14.55 16 21 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 22 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 23 N -0.88 -25.56 11.41 55.43 0.63 -24.93 16 24 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 27 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 28 C 0.11 2.70 5.44 -3.48 -0.02 2.68 16 29 H 0.06 0.82 8.11 -51.93 -0.42 0.40 16 30 H 0.10 1.49 5.91 -51.93 -0.31 1.18 16 31 H 0.06 0.53 8.03 -51.93 -0.42 0.12 16 32 H 0.09 0.67 8.07 -51.93 -0.42 0.25 16 33 H 0.09 1.07 7.49 -51.93 -0.39 0.68 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.40 7.88 -51.93 -0.41 -0.01 16 38 H 0.12 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.73 8.03 -51.93 -0.42 0.31 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.14 2.61 3.95 -56.48 -0.22 2.38 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 50 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 51 H 0.12 3.43 5.15 -51.93 -0.27 3.17 16 LS Contribution 401.94 15.07 6.06 6.06 Total: -1.00 -31.72 401.94 -9.74 -41.47 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -8.73 Total: 4.09 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.21 Total: 4.46 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.40 Total: -46.47 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.44 Total: -25.91 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.72 -9.74 -41.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118454334.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.434 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds