Wall clock time and date at job start Tue Mar 31 2020 21:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00184 * 2 1 4 4 C 1.53005 * 109.47180 * 89.99648 * 3 2 1 5 5 O 1.42897 * 109.46799 * 65.00439 * 4 3 2 6 6 C 1.42899 * 113.99960 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.47369 * 179.97438 * 6 5 4 8 8 C 1.52998 * 117.51852 * 116.28263 * 7 6 5 9 9 C 1.52999 * 117.49973 * 184.91422 * 7 6 5 10 10 C 1.34784 * 120.00230 * 179.97438 * 2 1 3 11 11 O 1.21350 * 119.99795 * 184.56860 * 10 2 1 12 12 C 1.49445 * 119.99737 * 4.56864 * 10 2 1 13 13 O 1.21347 * 120.00189 * 4.66156 * 12 10 2 14 14 N 1.34774 * 120.00001 * 184.66395 * 12 10 2 15 15 C 1.46932 * 120.63032 * 352.33308 * 14 12 10 16 16 C 1.53189 * 108.77809 * 233.58982 * 15 14 12 17 17 C 1.53039 * 109.31207 * 305.36458 * 16 15 14 18 18 C 1.53036 * 109.53759 * 61.36865 * 17 16 15 19 19 H 1.08998 * 109.50172 * 58.58213 * 18 17 16 20 20 C 1.50699 * 109.49768 * 178.68415 * 18 17 16 21 21 H 1.07997 * 120.00070 * 359.97438 * 20 18 17 22 22 C 1.37879 * 120.00244 * 180.02562 * 20 18 17 23 23 N 1.31517 * 119.99988 * 359.97438 * 22 20 18 24 24 Si 1.86804 * 120.00332 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47064 * 89.99392 * 24 22 20 26 26 H 1.48495 * 109.46949 * 209.99696 * 24 22 20 27 27 H 1.48498 * 109.46680 * 329.99606 * 24 22 20 28 28 C 1.46927 * 120.63482 * 172.06021 * 14 12 10 29 29 H 1.09005 * 109.46796 * 96.04193 * 1 2 3 30 30 H 1.09005 * 109.46562 * 216.03539 * 1 2 3 31 31 H 1.08993 * 109.47177 * 336.03214 * 1 2 3 32 32 H 1.09006 * 109.46732 * 330.00304 * 3 2 1 33 33 H 1.08992 * 109.47528 * 209.99922 * 3 2 1 34 34 H 1.09003 * 109.46923 * 305.00625 * 4 3 2 35 35 H 1.09001 * 109.47249 * 185.00200 * 4 3 2 36 36 H 1.08999 * 109.47306 * 59.99807 * 6 5 4 37 37 H 1.08998 * 109.47329 * 299.99932 * 6 5 4 38 38 H 1.09003 * 115.54966 * 330.58135 * 7 6 5 39 39 H 1.09000 * 117.50249 * 214.97506 * 8 7 6 40 40 H 1.08999 * 117.49716 * 359.97438 * 8 7 6 41 41 H 1.08998 * 117.49739 * 359.97218 * 9 7 6 42 42 H 1.08998 * 117.49798 * 144.99757 * 9 7 6 43 43 H 1.08997 * 109.58650 * 353.38317 * 15 14 12 44 44 H 1.09001 * 109.58412 * 113.65847 * 15 14 12 45 45 H 1.08994 * 109.49488 * 65.31876 * 16 15 14 46 46 H 1.08997 * 109.49303 * 185.41409 * 16 15 14 47 47 H 1.09005 * 109.46052 * 181.38538 * 17 16 15 48 48 H 1.09005 * 109.46184 * 301.35823 * 17 16 15 49 49 H 0.96992 * 120.00438 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.58575 * 246.20153 * 28 14 12 51 51 H 1.09003 * 109.58365 * 6.62313 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 8 3.3209 0.7725 2.0814 6 6 3.6239 1.0934 3.4405 7 6 4.5550 0.0270 4.0210 8 6 5.9564 0.4686 4.4476 9 6 4.9059 0.1284 5.5067 10 6 2.1389 -1.1672 0.0005 11 8 3.3496 -1.1688 0.0842 12 6 1.3953 -2.4595 -0.1020 13 8 0.1936 -2.4562 -0.2707 14 7 2.0592 -3.6284 -0.0070 15 6 3.5279 -3.6544 0.0289 16 6 4.0313 -4.6011 -1.0652 17 6 3.3739 -5.9720 -0.8901 18 6 1.8564 -5.8338 -1.0317 19 1 1.6187 -5.4172 -2.0105 20 6 1.2126 -7.1891 -0.8913 21 1 1.8244 -8.0622 -0.7187 22 6 -0.1573 -7.3146 -0.9841 23 7 -0.9022 -6.2514 -1.1947 24 14 -0.9554 -8.9945 -0.8093 25 1 -1.2784 -9.2429 0.6186 26 1 -2.2030 -9.0358 -1.6136 27 1 -0.0190 -10.0401 -1.2942 28 6 1.3282 -4.9007 0.0685 29 1 -0.3633 -0.1082 -1.0220 30 1 -0.3633 -0.8311 0.6046 31 1 -0.3633 0.9390 0.4174 32 1 1.6084 2.0284 -0.5138 33 1 3.1499 1.1384 -0.5138 34 1 1.5061 1.7549 1.9815 35 1 2.9181 2.6960 1.4439 36 1 2.7018 1.1248 4.0208 37 1 4.1136 2.0662 3.4837 38 1 4.4495 -0.9711 3.5957 39 1 6.7729 -0.2390 4.3031 40 1 6.2154 1.5189 4.3145 41 1 4.4738 0.9551 6.0706 42 1 5.0312 -0.8029 6.0589 43 1 3.9156 -2.6514 -0.1489 44 1 3.8633 -4.0081 1.0038 45 1 3.7731 -4.1961 -2.0436 46 1 5.1136 -4.7040 -0.9875 47 1 3.7491 -6.6547 -1.6526 48 1 3.6120 -6.3653 0.0982 49 1 -1.8660 -6.3396 -1.2597 50 1 1.4879 -5.3563 1.0458 51 1 0.2640 -4.7202 -0.0833 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118454334.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:01 Heat of formation + Delta-G solvation = -82.535131 kcal Electronic energy + Delta-G solvation = -31065.872407 eV Core-core repulsion = 26966.642635 eV Total energy + Delta-G solvation = -4099.229772 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.96875 -39.95503 -39.17823 -38.57032 -37.62574 -36.53759 -35.12087 -33.43865 -31.60295 -31.33061 -28.12310 -27.85208 -27.25271 -26.54082 -24.79719 -23.52039 -23.26307 -22.69663 -21.60253 -21.06223 -20.08479 -18.61626 -18.12978 -17.96958 -17.59864 -17.26149 -17.16327 -16.59561 -16.45045 -16.27148 -15.64016 -15.51874 -15.32354 -15.11049 -14.79441 -14.64003 -14.44688 -14.19520 -13.95266 -13.84237 -13.56856 -13.43421 -13.39428 -12.99845 -12.88669 -12.79272 -12.56650 -12.41917 -12.39063 -12.29195 -12.10200 -11.89314 -11.69922 -11.39029 -11.34701 -11.15001 -11.07798 -10.95709 -10.55048 -10.37871 -9.89942 -9.75918 -9.45388 -8.10800 -6.27873 0.48063 1.38441 1.41845 1.43975 1.53105 2.23807 2.41152 2.49787 2.64193 2.99158 3.16117 3.25828 3.85362 3.97835 4.04599 4.11833 4.17720 4.18500 4.19846 4.27968 4.35126 4.36949 4.48419 4.52609 4.57411 4.58885 4.69067 4.72785 4.73820 4.76020 4.81069 4.85844 4.97550 5.00270 5.03404 5.10834 5.19490 5.23197 5.23323 5.24688 5.30170 5.42756 5.55751 5.62493 5.84419 5.93929 5.99523 6.29609 6.38963 6.46426 6.79440 6.85685 7.08261 7.41627 8.93006 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013389 B = 0.003060 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.705332 B = 9148.188450 C = 9998.404046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.581 5.581 3 C 0.112 3.888 4 C 0.041 3.959 5 O -0.397 6.397 6 C 0.095 3.905 7 C -0.175 4.175 8 C -0.171 4.171 9 C -0.165 4.165 10 C 0.515 3.485 11 O -0.505 6.505 12 C 0.482 3.518 13 O -0.548 6.548 14 N -0.578 5.578 15 C 0.058 3.942 16 C -0.123 4.123 17 C -0.106 4.106 18 C 0.041 3.959 19 H -0.012 1.012 20 C -0.537 4.537 21 H 0.061 0.939 22 C 0.012 3.988 23 N -0.913 5.913 24 Si 0.960 3.040 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.265 1.265 28 C 0.123 3.877 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.137 0.863 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.151 0.849 44 H 0.063 0.937 45 H 0.047 0.953 46 H 0.097 0.903 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.261 0.739 50 H 0.040 0.960 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.481 20.892 8.979 24.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.314 5.314 3 C -0.009 4.009 4 C -0.036 4.036 5 O -0.316 6.316 6 C 0.019 3.981 7 C -0.193 4.193 8 C -0.208 4.208 9 C -0.202 4.202 10 C 0.298 3.702 11 O -0.382 6.382 12 C 0.265 3.735 13 O -0.427 6.427 14 N -0.310 5.310 15 C -0.062 4.062 16 C -0.161 4.161 17 C -0.144 4.144 18 C 0.022 3.978 19 H 0.007 0.993 20 C -0.576 4.576 21 H 0.079 0.921 22 C -0.188 4.188 23 N -0.551 5.551 24 Si 0.785 3.215 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.190 1.190 28 C 0.002 3.998 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.155 0.845 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.117 0.883 43 H 0.168 0.832 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.115 0.885 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.059 0.941 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.375 20.799 8.816 24.459 hybrid contribution -1.070 -1.225 0.028 1.627 sum 8.305 19.575 8.844 23.029 Atomic orbital electron populations 1.22157 0.76980 1.04067 1.02952 1.47733 1.08507 1.05030 1.70144 1.21981 0.98460 0.84122 0.96372 1.23096 0.93987 0.93130 0.93380 1.88086 1.67729 1.50404 1.25422 1.22015 0.97167 0.96468 0.82461 1.22107 0.98695 1.00071 0.98452 1.23115 0.91913 1.02806 1.02924 1.23050 1.02739 1.04075 0.90318 1.19938 0.87185 0.85187 0.77882 1.90302 1.13757 1.85057 1.49130 1.20612 0.87543 0.86185 0.79189 1.90699 1.15453 1.87272 1.49312 1.48458 1.08870 1.05829 1.67825 1.23183 0.77689 1.06231 0.99119 1.21880 1.00954 0.95142 0.98091 1.21553 0.95626 0.96415 1.00778 1.18950 0.92399 0.93783 0.92681 0.99335 1.21480 0.92273 0.93786 1.50037 0.92063 1.25887 0.98170 1.00290 0.94460 1.70070 1.05452 1.30256 1.49329 0.85531 0.77803 0.80022 0.78164 1.19958 1.21110 1.18952 1.21981 0.98496 0.81214 0.98152 0.92474 0.91669 0.87623 0.84478 0.89853 0.92421 0.89492 0.93135 0.91665 0.89750 0.88715 0.87487 0.87223 0.88302 0.83234 0.91866 0.93462 0.88450 0.92799 0.92623 0.92957 0.94143 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.96 9.25 127.77 1.18 3.14 16 2 N -0.58 -15.49 2.86 -848.34 -2.42 -17.91 16 3 C 0.11 1.99 5.82 86.38 0.50 2.50 16 4 C 0.04 0.68 6.28 71.98 0.45 1.13 16 5 O -0.40 -9.66 8.94 -136.91 -1.22 -10.89 16 6 C 0.10 1.82 6.22 71.98 0.45 2.27 16 7 C -0.17 -3.65 6.06 -10.79 -0.07 -3.72 16 8 C -0.17 -2.78 10.18 30.59 0.31 -2.47 16 9 C -0.16 -2.56 10.25 30.60 0.31 -2.24 16 10 C 0.52 18.10 7.35 87.27 0.64 18.74 16 11 O -0.51 -18.09 11.61 8.82 0.10 -17.98 16 12 C 0.48 20.87 7.58 87.27 0.66 21.53 16 13 O -0.55 -26.36 12.76 -3.24 -0.04 -26.41 16 14 N -0.58 -25.85 2.97 -819.63 -2.43 -28.28 16 15 C 0.06 2.18 6.14 86.36 0.53 2.71 16 16 C -0.12 -4.43 6.08 30.67 0.19 -4.24 16 17 C -0.11 -4.50 5.10 30.62 0.16 -4.35 16 18 C 0.04 2.17 2.26 -11.32 -0.03 2.14 16 19 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 20 C -0.54 -30.28 8.56 25.60 0.22 -30.07 16 21 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 22 C 0.01 0.66 5.31 84.65 0.45 1.10 16 23 N -0.91 -55.23 11.41 21.45 0.24 -54.98 16 24 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 25 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 26 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 C 0.12 6.41 5.44 86.51 0.47 6.88 16 29 H 0.06 1.47 8.11 -2.38 -0.02 1.45 16 30 H 0.06 2.06 5.91 -2.38 -0.01 2.04 16 31 H 0.11 1.59 8.03 -2.39 -0.02 1.57 16 32 H 0.14 1.31 8.07 -2.38 -0.02 1.29 16 33 H 0.08 1.73 7.49 -2.39 -0.02 1.71 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.96 7.88 -2.39 -0.02 0.94 16 38 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 40 H 0.11 1.42 8.03 -2.39 -0.02 1.40 16 41 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.15 5.48 3.95 -74.39 -0.29 5.18 16 44 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 47 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 48 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 49 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 50 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.09 5.12 5.15 -2.39 -0.01 5.10 16 Total: -1.00 -73.17 401.94 3.31 -69.87 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.62 Total: 24.98 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 6.43 Total: 15.07 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -4.61 Total: -101.17 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -1.16 Total: -55.28 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -73.17 3.31 -69.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118454334.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.669 kcal (2) G-P(sol) polarization free energy of solvation -73.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds