Wall clock time and date at job start Tue Mar 31 2020 21:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00205 * 2 1 4 4 C 1.52992 * 109.46918 * 269.99795 * 3 2 1 5 5 H 1.08997 * 110.44155 * 56.08482 * 4 3 2 6 6 C 1.54889 * 110.48751 * 293.54376 * 4 3 2 7 7 C 1.54893 * 102.75238 * 203.38484 * 6 4 3 8 8 C 1.54261 * 104.19464 * 37.93945 * 7 6 4 9 9 C 1.53875 * 106.60075 * 336.39452 * 8 7 6 10 10 H 1.09004 * 110.03186 * 240.71575 * 9 8 7 11 11 O 1.42895 * 110.03385 * 119.28755 * 9 8 7 12 12 C 1.34779 * 120.00030 * 179.97438 * 2 1 3 13 13 O 1.21349 * 120.00403 * 175.17617 * 12 2 1 14 14 C 1.49459 * 119.99827 * 355.45350 * 12 2 1 15 15 O 1.21346 * 119.99975 * 84.78617 * 14 12 2 16 16 N 1.34776 * 119.99610 * 264.78571 * 14 12 2 17 17 C 1.46923 * 120.63280 * 354.69152 * 16 14 12 18 18 C 1.52763 * 109.00735 * 233.58670 * 17 16 14 19 19 C 1.53036 * 109.38317 * 305.58672 * 18 17 16 20 20 C 1.53042 * 109.53508 * 61.24384 * 19 18 17 21 21 H 1.08998 * 109.50009 * 58.58495 * 20 19 18 22 22 C 1.50703 * 109.49635 * 178.67747 * 20 19 18 23 23 H 1.07999 * 120.00250 * 359.84174 * 22 20 19 24 24 C 1.37878 * 119.99815 * 179.83595 * 22 20 19 25 25 N 1.31510 * 120.00454 * 0.02562 * 24 22 20 26 26 Si 1.86800 * 119.99773 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47304 * 60.00135 * 26 24 22 28 28 H 1.48505 * 109.47020 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47312 * 300.00292 * 26 24 22 30 30 C 1.46932 * 120.62530 * 174.97866 * 16 14 12 31 31 H 1.08994 * 109.47274 * 274.74201 * 1 2 3 32 32 H 1.08998 * 109.46964 * 34.74344 * 1 2 3 33 33 H 1.09003 * 109.47070 * 154.73631 * 1 2 3 34 34 H 1.08998 * 109.47152 * 29.99451 * 3 2 1 35 35 H 1.09001 * 109.47148 * 149.99443 * 3 2 1 36 36 H 1.09008 * 110.75749 * 321.69595 * 6 4 3 37 37 H 1.08999 * 110.75991 * 85.06217 * 6 4 3 38 38 H 1.08997 * 110.48988 * 156.62179 * 7 6 4 39 39 H 1.09009 * 110.48216 * 279.26222 * 7 6 4 40 40 H 1.08999 * 110.03432 * 95.68201 * 8 7 6 41 41 H 1.09004 * 110.03442 * 217.06322 * 8 7 6 42 42 H 0.96700 * 114.00181 * 62.83021 * 11 9 8 43 43 H 1.08994 * 109.58564 * 353.42236 * 17 16 14 44 44 H 1.09002 * 109.58197 * 113.84939 * 17 16 14 45 45 H 1.09002 * 109.56155 * 185.55433 * 18 17 16 46 46 H 1.08995 * 109.35756 * 65.50246 * 18 17 16 47 47 H 1.08994 * 109.46326 * 301.22192 * 19 18 17 48 48 H 1.09001 * 109.44769 * 181.25566 * 19 18 17 49 49 H 0.96998 * 120.00341 * 179.97438 * 25 24 22 50 50 H 1.09002 * 109.58168 * 246.15443 * 30 16 14 51 51 H 1.09000 * 109.58681 * 6.57535 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4424 5 1 1.5134 1.7787 -1.9913 6 6 3.4216 0.7284 -2.1467 7 6 4.0247 1.5964 -3.2790 8 6 4.1964 2.9888 -2.6376 9 6 3.1969 3.0612 -1.4699 10 1 2.4893 3.8741 -1.6339 11 8 3.8954 3.2605 -0.2393 12 6 2.1389 -1.1672 0.0005 13 8 3.3492 -1.1692 -0.0878 14 6 1.3951 -2.4595 0.1037 15 8 0.9387 -2.9782 -0.8939 16 7 1.2313 -3.0486 1.3048 17 6 1.8753 -2.4955 2.5039 18 6 2.6848 -3.5966 3.1866 19 6 1.7785 -4.7995 3.4576 20 6 1.2408 -5.3441 2.1323 21 1 2.0748 -5.6295 1.4911 22 6 0.3746 -6.5484 2.3978 23 1 0.2245 -6.8930 3.4102 24 6 -0.2265 -7.2101 1.3480 25 7 -0.0435 -6.7907 0.1151 26 14 -1.3008 -8.7024 1.6772 27 1 -2.4355 -8.3122 2.5521 28 1 -1.8248 -9.2284 0.3910 29 1 -0.4957 -9.7533 2.3499 30 6 0.4103 -4.2598 1.4386 31 1 -0.3633 0.0850 1.0241 32 1 -0.3633 0.8444 -0.5857 33 1 -0.3633 -0.9294 -0.4386 34 1 1.6085 2.0284 0.5137 35 1 3.1499 1.1384 0.5139 36 1 4.1996 0.3943 -1.4601 37 1 2.8781 -0.1216 -2.5592 38 1 4.9902 1.1987 -3.5916 39 1 3.3401 1.6481 -4.1257 40 1 5.2143 3.1056 -2.2656 41 1 3.9747 3.7665 -3.3685 42 1 4.3838 4.0938 -0.1947 43 1 2.5390 -1.6793 2.2187 44 1 1.1133 -2.1268 3.1907 45 1 3.0860 -3.2237 4.1290 46 1 3.5052 -3.8984 2.5354 47 1 0.9449 -4.4913 4.0885 48 1 2.3496 -5.5772 3.9648 49 1 -0.4660 -7.2565 -0.6234 50 1 -0.4735 -4.0378 2.0367 51 1 0.1078 -4.6072 0.4508 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118520342.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:03 Heat of formation + Delta-G solvation = -126.534698 kcal Electronic energy + Delta-G solvation = -31358.444024 eV Core-core repulsion = 27257.306288 eV Total energy + Delta-G solvation = -4101.137736 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.63514 -39.30564 -38.17215 -36.70862 -35.72102 -34.90840 -33.39222 -31.83968 -30.73009 -29.85060 -27.86442 -26.92615 -26.34457 -25.08042 -24.50291 -22.14224 -21.81313 -20.82739 -20.01918 -19.43816 -18.34898 -17.69130 -17.33329 -16.46056 -16.28155 -16.17814 -15.68691 -15.04339 -14.71853 -14.55825 -14.33816 -14.24177 -13.95186 -13.72377 -13.54502 -13.24031 -13.10802 -12.72870 -12.64796 -12.63319 -12.50808 -12.19987 -12.03404 -11.90840 -11.46348 -11.25434 -11.21858 -11.01496 -10.96628 -10.90209 -10.64878 -10.60358 -10.53209 -10.38080 -10.24658 -10.16043 -9.92715 -9.20656 -9.14182 -8.81918 -8.72435 -8.45646 -7.88284 -6.00493 -4.09769 2.46049 2.57359 3.06768 3.31768 3.37705 3.38927 3.78740 3.94188 4.33398 4.40641 4.42040 4.58302 4.67542 4.99585 5.05065 5.11079 5.17518 5.28206 5.31124 5.31410 5.38162 5.45080 5.49827 5.50546 5.62975 5.67397 5.69803 5.71795 5.78172 5.92855 5.96669 6.04570 6.18606 6.18654 6.30649 6.37195 6.48583 6.57389 6.64245 6.82130 6.95312 7.03821 7.14290 7.20054 7.39020 7.58330 7.83554 7.93307 8.03545 8.08901 8.34055 8.54692 8.94145 9.55886 11.04726 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.002765 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.529708 B =10125.325150 C =10621.642454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.606 5.606 3 C 0.134 3.866 4 C -0.103 4.103 5 H 0.083 0.917 6 C -0.115 4.115 7 C -0.124 4.124 8 C -0.156 4.156 9 C 0.108 3.892 10 H 0.056 0.944 11 O -0.560 6.560 12 C 0.517 3.483 13 O -0.512 6.512 14 C 0.506 3.494 15 O -0.513 6.513 16 N -0.586 5.586 17 C 0.108 3.892 18 C -0.133 4.133 19 C -0.110 4.110 20 C 0.039 3.961 21 H 0.031 0.969 22 C -0.521 4.521 23 H 0.059 0.941 24 C 0.063 3.937 25 N -0.880 5.880 26 Si 0.893 3.107 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.277 1.277 30 C 0.111 3.889 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.375 0.625 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.050 0.950 48 H 0.053 0.947 49 H 0.265 0.735 50 H 0.049 0.951 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.866 22.909 -0.825 23.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.342 5.342 3 C 0.012 3.988 4 C -0.122 4.122 5 H 0.101 0.899 6 C -0.153 4.153 7 C -0.162 4.162 8 C -0.193 4.193 9 C 0.049 3.951 10 H 0.074 0.926 11 O -0.366 6.366 12 C 0.300 3.700 13 O -0.385 6.385 14 C 0.287 3.713 15 O -0.388 6.388 16 N -0.320 5.320 17 C -0.015 4.015 18 C -0.171 4.171 19 C -0.148 4.148 20 C 0.020 3.980 21 H 0.049 0.951 22 C -0.560 4.560 23 H 0.077 0.923 24 C -0.140 4.140 25 N -0.518 5.518 26 Si 0.721 3.279 27 H -0.202 1.202 28 H -0.213 1.213 29 H -0.203 1.203 30 C -0.009 4.009 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.222 0.778 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.067 0.933 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.939 21.979 -1.467 22.377 hybrid contribution -0.412 -0.157 -0.131 0.460 sum 3.527 21.822 -1.598 22.163 Atomic orbital electron populations 1.21909 0.78883 1.04042 1.02263 1.47921 1.07383 1.05644 1.73208 1.21306 0.98150 0.83481 0.95872 1.22477 0.98532 0.93787 0.97411 0.89861 1.22642 0.98824 0.96768 0.97021 1.22327 1.01109 0.94637 0.98138 1.22911 1.00163 0.98278 0.97991 1.22400 0.92448 0.96625 0.83647 0.92577 1.86562 1.68815 1.44180 1.37038 1.20720 0.88050 0.84923 0.76276 1.90742 1.13239 1.86529 1.48034 1.20043 0.80786 0.85601 0.84845 1.90824 1.48491 1.64408 1.35100 1.48580 1.48612 1.29026 1.05778 1.21602 0.96242 0.96319 0.87338 1.21855 0.98953 0.96771 0.99562 1.21635 0.97628 0.95366 1.00181 1.18979 0.95538 0.92506 0.90998 0.95104 1.21031 1.30214 1.11502 0.93216 0.92308 1.25063 0.96487 0.97351 0.95143 1.69870 1.43325 1.40138 0.98436 0.86640 0.80745 0.83076 0.77428 1.20246 1.21265 1.20274 1.22448 0.91818 0.80748 1.05841 0.92060 0.90841 0.90081 0.90348 0.88661 0.89441 0.91745 0.91547 0.91849 0.90815 0.91636 0.77792 0.91342 0.91589 0.91927 0.91844 0.93079 0.92797 0.92534 0.93276 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 10.29 59.85 0.62 1.43 16 2 N -0.61 -8.25 2.82 -182.09 -0.51 -8.77 16 3 C 0.13 1.54 4.28 -4.05 -0.02 1.53 16 4 C -0.10 -1.08 3.09 -88.96 -0.27 -1.36 16 5 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 6 C -0.12 -1.48 4.76 -24.74 -0.12 -1.60 16 7 C -0.12 -1.24 6.83 -25.07 -0.17 -1.41 16 8 C -0.16 -1.23 6.61 -25.62 -0.17 -1.40 16 9 C 0.11 0.89 4.12 -25.61 -0.11 0.79 16 10 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 11 O -0.56 -4.71 11.64 -35.23 -0.41 -5.12 16 12 C 0.52 9.21 5.04 -11.58 -0.06 9.15 16 13 O -0.51 -10.06 14.06 5.50 0.08 -9.98 16 14 C 0.51 10.62 5.82 -11.58 -0.07 10.55 16 15 O -0.51 -12.64 16.10 5.50 0.09 -12.55 16 16 N -0.59 -11.96 2.98 -173.54 -0.52 -12.48 16 17 C 0.11 1.81 6.30 -3.93 -0.02 1.79 16 18 C -0.13 -2.28 6.06 -26.83 -0.16 -2.44 16 19 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 20 C 0.04 0.96 2.25 -91.65 -0.21 0.75 16 21 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 22 C -0.52 -13.97 8.56 -34.44 -0.29 -14.27 16 23 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 24 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 25 N -0.88 -25.51 11.39 55.43 0.63 -24.88 16 26 Si 0.89 21.08 29.54 -169.99 -5.02 16.05 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 C 0.11 2.63 5.41 -3.71 -0.02 2.61 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 33 H 0.08 1.12 6.50 -51.93 -0.34 0.79 16 34 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.10 1.30 6.84 -51.93 -0.36 0.94 16 36 H 0.09 1.34 6.60 -51.92 -0.34 1.00 16 37 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 40 H 0.07 0.57 7.95 -51.93 -0.41 0.16 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.38 1.56 9.11 45.56 0.42 1.98 16 43 H 0.07 1.09 6.22 -51.93 -0.32 0.77 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 51 H 0.12 3.44 5.11 -51.93 -0.27 3.18 16 LS Contribution 394.18 15.07 5.94 5.94 Total: -1.00 -32.82 394.18 -8.95 -41.77 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -7.92 Total: 4.62 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -1.31 Total: 5.40 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.40 Total: -46.12 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.24 Total: -27.66 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.82 -8.95 -41.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118520342.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.761 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds