Wall clock time and date at job start Tue Mar 31 2020 21:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00205 * 2 1 4 4 C 1.52992 * 109.46918 * 269.99795 * 3 2 1 5 5 H 1.08997 * 110.44155 * 56.08482 * 4 3 2 6 6 C 1.54889 * 110.48751 * 293.54376 * 4 3 2 7 7 C 1.54893 * 102.75238 * 203.38484 * 6 4 3 8 8 C 1.54261 * 104.19464 * 37.93945 * 7 6 4 9 9 C 1.53875 * 106.60075 * 336.39452 * 8 7 6 10 10 H 1.09004 * 110.03186 * 240.71575 * 9 8 7 11 11 O 1.42895 * 110.03385 * 119.28755 * 9 8 7 12 12 C 1.34779 * 120.00030 * 179.97438 * 2 1 3 13 13 O 1.21349 * 120.00403 * 175.17617 * 12 2 1 14 14 C 1.49459 * 119.99827 * 355.45350 * 12 2 1 15 15 O 1.21346 * 119.99975 * 84.78617 * 14 12 2 16 16 N 1.34776 * 119.99610 * 264.78571 * 14 12 2 17 17 C 1.46923 * 120.63280 * 354.69152 * 16 14 12 18 18 C 1.52763 * 109.00735 * 233.58670 * 17 16 14 19 19 C 1.53036 * 109.38317 * 305.58672 * 18 17 16 20 20 C 1.53042 * 109.53508 * 61.24384 * 19 18 17 21 21 H 1.08998 * 109.50009 * 58.58495 * 20 19 18 22 22 C 1.50703 * 109.49635 * 178.67747 * 20 19 18 23 23 H 1.07999 * 120.00250 * 359.84174 * 22 20 19 24 24 C 1.37878 * 119.99815 * 179.83595 * 22 20 19 25 25 N 1.31510 * 120.00454 * 0.02562 * 24 22 20 26 26 Si 1.86800 * 119.99773 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47304 * 60.00135 * 26 24 22 28 28 H 1.48505 * 109.47020 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47312 * 300.00292 * 26 24 22 30 30 C 1.46932 * 120.62530 * 174.97866 * 16 14 12 31 31 H 1.08994 * 109.47274 * 274.74201 * 1 2 3 32 32 H 1.08998 * 109.46964 * 34.74344 * 1 2 3 33 33 H 1.09003 * 109.47070 * 154.73631 * 1 2 3 34 34 H 1.08998 * 109.47152 * 29.99451 * 3 2 1 35 35 H 1.09001 * 109.47148 * 149.99443 * 3 2 1 36 36 H 1.09008 * 110.75749 * 321.69595 * 6 4 3 37 37 H 1.08999 * 110.75991 * 85.06217 * 6 4 3 38 38 H 1.08997 * 110.48988 * 156.62179 * 7 6 4 39 39 H 1.09009 * 110.48216 * 279.26222 * 7 6 4 40 40 H 1.08999 * 110.03432 * 95.68201 * 8 7 6 41 41 H 1.09004 * 110.03442 * 217.06322 * 8 7 6 42 42 H 0.96700 * 114.00181 * 62.83021 * 11 9 8 43 43 H 1.08994 * 109.58564 * 353.42236 * 17 16 14 44 44 H 1.09002 * 109.58197 * 113.84939 * 17 16 14 45 45 H 1.09002 * 109.56155 * 185.55433 * 18 17 16 46 46 H 1.08995 * 109.35756 * 65.50246 * 18 17 16 47 47 H 1.08994 * 109.46326 * 301.22192 * 19 18 17 48 48 H 1.09001 * 109.44769 * 181.25566 * 19 18 17 49 49 H 0.96998 * 120.00341 * 179.97438 * 25 24 22 50 50 H 1.09002 * 109.58168 * 246.15443 * 30 16 14 51 51 H 1.09000 * 109.58681 * 6.57535 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4424 5 1 1.5134 1.7787 -1.9913 6 6 3.4216 0.7284 -2.1467 7 6 4.0247 1.5964 -3.2790 8 6 4.1964 2.9888 -2.6376 9 6 3.1969 3.0612 -1.4699 10 1 2.4893 3.8741 -1.6339 11 8 3.8954 3.2605 -0.2393 12 6 2.1389 -1.1672 0.0005 13 8 3.3492 -1.1692 -0.0878 14 6 1.3951 -2.4595 0.1037 15 8 0.9387 -2.9782 -0.8939 16 7 1.2313 -3.0486 1.3048 17 6 1.8753 -2.4955 2.5039 18 6 2.6848 -3.5966 3.1866 19 6 1.7785 -4.7995 3.4576 20 6 1.2408 -5.3441 2.1323 21 1 2.0748 -5.6295 1.4911 22 6 0.3746 -6.5484 2.3978 23 1 0.2245 -6.8930 3.4102 24 6 -0.2265 -7.2101 1.3480 25 7 -0.0435 -6.7907 0.1151 26 14 -1.3008 -8.7024 1.6772 27 1 -2.4355 -8.3122 2.5521 28 1 -1.8248 -9.2284 0.3910 29 1 -0.4957 -9.7533 2.3499 30 6 0.4103 -4.2598 1.4386 31 1 -0.3633 0.0850 1.0241 32 1 -0.3633 0.8444 -0.5857 33 1 -0.3633 -0.9294 -0.4386 34 1 1.6085 2.0284 0.5137 35 1 3.1499 1.1384 0.5139 36 1 4.1996 0.3943 -1.4601 37 1 2.8781 -0.1216 -2.5592 38 1 4.9902 1.1987 -3.5916 39 1 3.3401 1.6481 -4.1257 40 1 5.2143 3.1056 -2.2656 41 1 3.9747 3.7665 -3.3685 42 1 4.3838 4.0938 -0.1947 43 1 2.5390 -1.6793 2.2187 44 1 1.1133 -2.1268 3.1907 45 1 3.0860 -3.2237 4.1290 46 1 3.5052 -3.8984 2.5354 47 1 0.9449 -4.4913 4.0885 48 1 2.3496 -5.5772 3.9648 49 1 -0.4660 -7.2565 -0.6234 50 1 -0.4735 -4.0378 2.0367 51 1 0.1078 -4.6072 0.4508 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118520342.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:01 Heat of formation + Delta-G solvation = -149.854809 kcal Electronic energy + Delta-G solvation = -31359.455260 eV Core-core repulsion = 27257.306288 eV Total energy + Delta-G solvation = -4102.148972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.05735 -40.42981 -39.40557 -38.42809 -36.85047 -35.66902 -35.33527 -33.57824 -31.77921 -31.50998 -28.63613 -28.15270 -27.63845 -26.92555 -25.82380 -23.67749 -23.38010 -21.62677 -21.20281 -20.69196 -19.77212 -19.02697 -18.44430 -18.16191 -17.73989 -17.54373 -16.82064 -16.49465 -15.91059 -15.86775 -15.81748 -15.38484 -15.30933 -15.01503 -14.75960 -14.59770 -14.42852 -14.30666 -14.10426 -13.90474 -13.60654 -13.43577 -13.36671 -12.97036 -12.85481 -12.76806 -12.58615 -12.32605 -12.27914 -12.22062 -12.05924 -12.02451 -11.87577 -11.69311 -11.53592 -11.40630 -11.10577 -10.98422 -10.75545 -10.56005 -10.46652 -9.83457 -9.61997 -8.10707 -6.28534 1.01995 1.13339 1.42580 1.43421 1.51576 1.52789 2.37877 2.44446 3.13820 3.18702 3.36312 3.57151 3.68042 3.90292 3.90939 4.07073 4.12077 4.22028 4.25854 4.37396 4.45276 4.48312 4.50411 4.55689 4.59930 4.66172 4.70448 4.73398 4.77426 4.80620 4.86775 4.89724 4.99901 5.03068 5.12979 5.16180 5.19650 5.21214 5.27665 5.30583 5.36230 5.42418 5.49374 5.57695 5.85418 5.94122 5.97728 6.27811 6.33423 6.70193 6.81378 6.89399 7.02704 7.41939 8.92801 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.002765 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.529708 B =10125.325150 C =10621.642454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.590 5.590 3 C 0.135 3.865 4 C -0.104 4.104 5 H 0.097 0.903 6 C -0.118 4.118 7 C -0.125 4.125 8 C -0.150 4.150 9 C 0.116 3.884 10 H 0.087 0.913 11 O -0.578 6.578 12 C 0.524 3.476 13 O -0.538 6.538 14 C 0.499 3.501 15 O -0.564 6.564 16 N -0.586 5.586 17 C 0.106 3.894 18 C -0.127 4.127 19 C -0.103 4.103 20 C 0.035 3.965 21 H -0.020 1.020 22 C -0.534 4.534 23 H 0.067 0.933 24 C 0.009 3.991 25 N -0.917 5.917 26 Si 0.960 3.040 27 H -0.263 1.263 28 H -0.291 1.291 29 H -0.271 1.271 30 C 0.124 3.876 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.049 0.951 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.028 0.972 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.394 0.606 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.039 0.961 47 H 0.069 0.931 48 H 0.054 0.946 49 H 0.260 0.740 50 H 0.058 0.942 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 26.230 1.218 26.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.324 5.324 3 C 0.014 3.986 4 C -0.123 4.123 5 H 0.115 0.885 6 C -0.156 4.156 7 C -0.162 4.162 8 C -0.187 4.187 9 C 0.056 3.944 10 H 0.105 0.895 11 O -0.387 6.387 12 C 0.306 3.694 13 O -0.415 6.415 14 C 0.282 3.718 15 O -0.442 6.442 16 N -0.319 5.319 17 C -0.016 4.016 18 C -0.165 4.165 19 C -0.140 4.140 20 C 0.016 3.984 21 H -0.002 1.002 22 C -0.572 4.572 23 H 0.085 0.915 24 C -0.190 4.190 25 N -0.555 5.555 26 Si 0.785 3.215 27 H -0.187 1.187 28 H -0.216 1.216 29 H -0.196 1.196 30 C 0.003 3.997 31 H 0.103 0.897 32 H 0.129 0.871 33 H 0.068 0.932 34 H 0.132 0.868 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.245 0.755 43 H 0.098 0.902 44 H 0.119 0.881 45 H 0.126 0.874 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.121 25.366 0.629 25.565 hybrid contribution -0.122 -1.183 -0.769 1.416 sum 2.999 24.183 -0.140 24.368 Atomic orbital electron populations 1.22137 0.77102 1.04040 1.04240 1.47975 1.08491 1.04993 1.70891 1.21496 0.97600 0.82598 0.96866 1.22529 0.98798 0.94614 0.96375 0.88509 1.22531 0.98500 0.96839 0.97747 1.22337 1.00699 0.95645 0.97546 1.22898 1.00363 0.97078 0.98381 1.22344 0.92736 0.95689 0.83585 0.89529 1.86517 1.69273 1.45895 1.36990 1.20063 0.87400 0.84888 0.77076 1.90742 1.14036 1.86720 1.50032 1.20733 0.80178 0.86711 0.84211 1.90783 1.50681 1.66009 1.36775 1.48600 1.48160 1.27960 1.07157 1.21903 0.97198 0.96301 0.86197 1.21833 0.97675 0.95728 1.01282 1.21516 0.98648 0.96517 0.97356 1.18938 0.93820 0.92805 0.92851 1.00205 1.21454 1.30008 1.12268 0.93477 0.91530 1.25923 0.97936 1.00335 0.94816 1.70084 1.44594 1.41491 0.99373 0.85580 0.79238 0.79464 0.77198 1.18743 1.21642 1.19589 1.21924 0.92420 0.82026 1.03316 0.89671 0.87079 0.93199 0.86788 0.90694 0.92584 0.95284 0.92274 0.90994 0.90781 0.89218 0.75544 0.90201 0.88094 0.87368 0.94173 0.91257 0.92696 0.93084 0.92353 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.38 10.29 127.77 1.31 2.70 16 2 N -0.59 -15.48 2.82 -848.36 -2.39 -17.87 16 3 C 0.14 2.82 4.28 86.38 0.37 3.19 16 4 C -0.10 -1.99 3.09 -9.72 -0.03 -2.02 16 5 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 6 C -0.12 -3.14 4.76 31.89 0.15 -2.99 16 7 C -0.12 -2.43 6.83 31.67 0.22 -2.21 16 8 C -0.15 -1.98 6.61 31.32 0.21 -1.77 16 9 C 0.12 1.51 4.12 31.32 0.13 1.64 16 10 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 11 O -0.58 -7.95 11.64 -148.98 -1.73 -9.68 16 12 C 0.52 19.15 5.04 87.27 0.44 19.59 16 13 O -0.54 -22.14 14.06 -3.24 -0.05 -22.18 16 14 C 0.50 22.02 5.82 87.27 0.51 22.52 16 15 O -0.56 -30.01 16.10 -3.23 -0.05 -30.07 16 16 N -0.59 -24.53 2.98 -821.31 -2.45 -26.98 16 17 C 0.11 3.36 6.30 86.22 0.54 3.90 16 18 C -0.13 -4.16 6.06 30.53 0.19 -3.97 16 19 C -0.10 -4.01 5.11 30.62 0.16 -3.85 16 20 C 0.04 1.79 2.25 -11.46 -0.03 1.77 16 21 H -0.02 -1.23 8.14 -2.39 -0.02 -1.24 16 22 C -0.53 -29.19 8.56 25.60 0.22 -28.97 16 23 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 24 C 0.01 0.52 5.30 84.66 0.45 0.97 16 25 N -0.92 -56.00 11.39 21.45 0.24 -55.75 16 26 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 27 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 28 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 29 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 30 C 0.12 6.15 5.41 86.36 0.47 6.61 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.11 1.50 8.11 -2.39 -0.02 1.48 16 33 H 0.05 1.40 6.50 -2.39 -0.02 1.38 16 34 H 0.11 1.64 8.07 -2.39 -0.02 1.62 16 35 H 0.07 1.95 6.84 -2.39 -0.02 1.93 16 36 H 0.06 1.83 6.60 -2.38 -0.02 1.81 16 37 H 0.03 0.93 8.07 -2.39 -0.02 0.92 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.07 0.99 7.95 -2.39 -0.02 0.97 16 41 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.39 1.94 9.11 -74.06 -0.67 1.26 16 43 H 0.08 2.41 6.22 -2.39 -0.01 2.40 16 44 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 46 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 48 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 50 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 51 H 0.08 4.75 5.11 -2.39 -0.01 4.74 16 Total: -1.00 -79.21 394.18 1.15 -78.07 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.25 Total: 21.34 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 5.30 Total: 17.12 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -4.60 Total: -100.60 kcal Atomic # 8 Polarization: -60.10 SS G_CDS: -1.83 Total: -61.93 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -79.21 1.15 -78.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118520342.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.787 kcal (2) G-P(sol) polarization free energy of solvation -79.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds