Wall clock time and date at job start Tue Mar 31 2020 21:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46508 * 119.99958 * 2 1 4 4 C 1.53001 * 109.47034 * 270.00008 * 3 2 1 5 5 H 1.09006 * 110.01507 * 54.29972 * 4 3 2 6 6 C 1.54266 * 110.03429 * 292.90581 * 4 3 2 7 7 C 1.54960 * 104.16119 * 217.13610 * 6 4 3 8 8 C 1.54890 * 102.77509 * 37.88969 * 7 6 4 9 9 C 1.53878 * 110.02975 * 175.68870 * 4 3 2 10 10 H 1.09004 * 110.02930 * 238.62021 * 9 4 3 11 11 O 1.42897 * 110.03555 * 359.97438 * 9 4 3 12 12 C 1.34777 * 120.00282 * 180.02562 * 2 1 3 13 13 O 1.21347 * 119.99969 * 184.79050 * 12 2 1 14 14 C 1.49444 * 119.99788 * 4.78959 * 12 2 1 15 15 O 1.21351 * 120.00308 * 84.53090 * 14 12 2 16 16 N 1.34785 * 120.00068 * 264.53655 * 14 12 2 17 17 C 1.46931 * 120.62604 * 355.02139 * 16 14 12 18 18 C 1.53191 * 108.76937 * 126.37246 * 17 16 14 19 19 C 1.53039 * 109.34064 * 54.62387 * 18 17 16 20 20 C 1.53047 * 109.53577 * 298.67734 * 19 18 17 21 21 H 1.09003 * 109.49623 * 301.35112 * 20 19 18 22 22 C 1.50695 * 109.49748 * 181.28551 * 20 19 18 23 23 H 1.08004 * 120.00051 * 358.79310 * 22 20 19 24 24 C 1.37879 * 120.00115 * 178.79610 * 22 20 19 25 25 N 1.31508 * 120.00052 * 152.40099 * 24 22 20 26 26 Si 1.86799 * 119.99775 * 332.12488 * 24 22 20 27 27 H 1.48497 * 109.47210 * 180.27759 * 26 24 22 28 28 H 1.48501 * 109.47113 * 300.27351 * 26 24 22 29 29 H 1.48498 * 109.47237 * 60.27209 * 26 24 22 30 30 C 1.46921 * 120.63180 * 175.00793 * 16 14 12 31 31 H 1.08996 * 109.46618 * 274.73080 * 1 2 3 32 32 H 1.08996 * 109.46957 * 34.72651 * 1 2 3 33 33 H 1.09000 * 109.46604 * 154.72767 * 1 2 3 34 34 H 1.09001 * 109.46726 * 30.00147 * 3 2 1 35 35 H 1.08998 * 109.47073 * 150.00187 * 3 2 1 36 36 H 1.09001 * 110.48518 * 335.78945 * 6 4 3 37 37 H 1.09000 * 110.48100 * 98.42538 * 6 4 3 38 38 H 1.09000 * 110.72162 * 279.57668 * 7 6 4 39 39 H 1.09004 * 110.92254 * 156.29773 * 7 6 4 40 40 H 1.09007 * 110.48420 * 203.40213 * 8 7 6 41 41 H 1.09002 * 110.60153 * 80.81785 * 8 7 6 42 42 H 0.96696 * 114.00564 * 179.97438 * 11 9 4 43 43 H 1.09000 * 109.58541 * 246.16122 * 17 16 14 44 44 H 1.08994 * 109.58642 * 6.58664 * 17 16 14 45 45 H 1.09000 * 109.49402 * 174.58468 * 18 17 16 46 46 H 1.08999 * 109.49903 * 294.64649 * 18 17 16 47 47 H 1.09002 * 109.48755 * 178.64961 * 19 18 17 48 48 H 1.08990 * 109.43545 * 58.67944 * 19 18 17 49 49 H 0.97001 * 120.00458 * 354.71093 * 25 24 22 50 50 H 1.08994 * 109.58813 * 113.84194 * 30 16 14 51 51 H 1.08997 * 109.70340 * 353.47897 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5126 1.7460 -1.9935 6 6 3.4309 0.7349 -2.1288 7 6 4.3064 1.6451 -3.0267 8 6 4.4907 2.9116 -2.1542 9 6 3.1258 3.0940 -1.4589 10 1 2.5127 3.8010 -2.0178 11 8 3.3155 3.5620 -0.1221 12 6 2.1390 -1.1672 -0.0005 13 8 3.3492 -1.1690 0.0872 14 6 1.3957 -2.4591 -0.1092 15 8 1.0829 -2.8894 -1.1999 16 7 1.0725 -3.1464 1.0043 17 6 1.5373 -2.6958 2.3234 18 6 0.3274 -2.5638 3.2537 19 6 -0.4412 -3.8870 3.2764 20 6 -0.9468 -4.2094 1.8683 21 1 -1.5883 -3.4007 1.5180 22 6 -1.7304 -5.4963 1.8976 23 1 -1.8391 -6.0413 2.8237 24 6 -2.3084 -5.9780 0.7423 25 7 -2.5056 -7.2698 0.5948 26 14 -2.8185 -4.7949 -0.6103 27 1 -3.4168 -5.5574 -1.7353 28 1 -3.8174 -3.8342 -0.0770 29 1 -1.6268 -4.0524 -1.0939 30 6 0.2487 -4.3601 0.9222 31 1 -0.3632 0.0848 1.0242 32 1 -0.3633 0.8446 -0.5854 33 1 -0.3632 -0.9293 -0.4387 34 1 1.6084 2.0284 0.5139 35 1 3.1500 1.1385 0.5138 36 1 4.0459 0.2263 -1.3865 37 1 2.8856 0.0111 -2.7345 38 1 3.7867 1.8870 -3.9538 39 1 5.2682 1.1766 -3.2356 40 1 4.7192 3.7752 -2.7789 41 1 5.2775 2.7574 -1.4157 42 1 3.7367 4.4306 -0.0655 43 1 2.2358 -3.4253 2.7334 44 1 2.0308 -1.7289 2.2262 45 1 0.6676 -2.3234 4.2609 46 1 -0.3255 -1.7699 2.8910 47 1 -1.2891 -3.8033 3.9563 48 1 0.2194 -4.6844 3.6164 49 1 -2.1758 -7.8903 1.2635 50 1 0.8420 -5.2252 1.2181 51 1 -0.1082 -4.4936 -0.0990 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118520344.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:09 Heat of formation + Delta-G solvation = -126.706973 kcal Electronic energy + Delta-G solvation = -31695.181681 eV Core-core repulsion = 27594.036474 eV Total energy + Delta-G solvation = -4101.145207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.84887 -39.46265 -38.34741 -36.97288 -35.83997 -35.09026 -33.52081 -32.04136 -30.81023 -30.40394 -27.84245 -27.01384 -26.51899 -25.00574 -24.60350 -22.19693 -21.84604 -21.13024 -19.87833 -19.34470 -18.70255 -17.80136 -17.62897 -17.32551 -16.61369 -16.44095 -15.89401 -15.13163 -14.78511 -14.53677 -14.44760 -14.19827 -14.00491 -13.87387 -13.62732 -13.52348 -13.31770 -13.06424 -12.87476 -12.66329 -12.52096 -12.42580 -12.14734 -11.87777 -11.70206 -11.53171 -11.28792 -11.23253 -11.12502 -10.94631 -10.82283 -10.75197 -10.48903 -10.38751 -10.27827 -10.18159 -9.79302 -9.62515 -9.30882 -9.02294 -8.79723 -8.23648 -8.15367 -6.54071 -4.13091 2.28657 2.35173 2.88032 3.43193 3.49108 3.53915 3.63281 3.86853 4.24505 4.34212 4.39105 4.49235 4.62987 4.95831 4.98463 5.03158 5.07589 5.10494 5.13777 5.26299 5.27101 5.33429 5.37735 5.40516 5.47043 5.57047 5.64973 5.67609 5.74619 5.79690 5.84619 5.95237 5.96051 6.05123 6.06713 6.18129 6.24828 6.34715 6.37628 6.54865 6.59363 6.72922 6.76019 7.07331 7.13907 7.31284 7.36182 7.65627 7.87684 8.04036 8.25344 8.31958 8.84039 9.51184 10.81222 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.003233 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.714444 B = 8658.416510 C = 9158.270844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.602 5.602 3 C 0.134 3.866 4 C -0.103 4.103 5 H 0.080 0.920 6 C -0.128 4.128 7 C -0.122 4.122 8 C -0.156 4.156 9 C 0.109 3.891 10 H 0.059 0.941 11 O -0.563 6.563 12 C 0.520 3.480 13 O -0.517 6.517 14 C 0.506 3.494 15 O -0.519 6.519 16 N -0.589 5.589 17 C 0.109 3.891 18 C -0.134 4.134 19 C -0.102 4.102 20 C 0.019 3.981 21 H 0.022 0.978 22 C -0.615 4.615 23 H 0.060 0.940 24 C 0.045 3.955 25 N -0.886 5.886 26 Si 1.019 2.981 27 H -0.284 1.284 28 H -0.283 1.283 29 H -0.265 1.265 30 C 0.104 3.896 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.376 0.624 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.272 0.728 50 H 0.065 0.935 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.705 23.246 -1.053 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.337 5.337 3 C 0.013 3.987 4 C -0.123 4.123 5 H 0.098 0.902 6 C -0.165 4.165 7 C -0.160 4.160 8 C -0.194 4.194 9 C 0.049 3.951 10 H 0.077 0.923 11 O -0.368 6.368 12 C 0.303 3.697 13 O -0.392 6.392 14 C 0.287 3.713 15 O -0.395 6.395 16 N -0.322 5.322 17 C -0.014 4.014 18 C -0.173 4.173 19 C -0.139 4.139 20 C -0.001 4.001 21 H 0.040 0.960 22 C -0.652 4.652 23 H 0.079 0.921 24 C -0.164 4.164 25 N -0.517 5.517 26 Si 0.846 3.154 27 H -0.210 1.210 28 H -0.209 1.209 29 H -0.191 1.191 30 C -0.016 4.016 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.223 0.777 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.137 22.468 -2.913 24.820 hybrid contribution 0.921 0.451 1.256 1.622 sum 11.058 22.919 -1.657 25.501 Atomic orbital electron populations 1.21954 0.78601 1.04054 1.02647 1.47942 1.07558 1.05719 1.72480 1.21337 0.98352 0.83189 0.95850 1.22252 0.99078 0.93395 0.97532 0.90177 1.22652 0.97473 0.97152 0.99249 1.22411 1.00266 0.95443 0.97870 1.23106 0.98073 0.98618 0.99626 1.22442 0.95067 0.94805 0.82786 0.92306 1.86540 1.83821 1.39551 1.26931 1.20531 0.88069 0.84962 0.76155 1.90720 1.13194 1.86739 1.48513 1.20174 0.80033 0.85518 0.85539 1.90807 1.53044 1.69288 1.26338 1.48576 1.50280 1.27888 1.05496 1.21745 0.96876 0.99635 0.83171 1.21995 0.96851 1.00071 0.98344 1.21473 0.98699 0.94360 0.99393 1.19230 0.92139 0.97985 0.90758 0.96014 1.21765 1.37789 1.08121 0.97541 0.92140 1.25712 0.93741 0.97718 0.99198 1.70856 1.43598 1.02243 1.35027 0.84393 0.77930 0.76320 0.76723 1.20969 1.20929 1.19060 1.22833 0.92233 0.83053 1.03479 0.91584 0.90581 0.90312 0.89524 0.89006 0.89167 0.91658 0.91624 0.91291 0.91596 0.90421 0.77664 0.90924 0.91092 0.91513 0.91972 0.92365 0.92707 0.91840 0.91693 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 10.39 59.85 0.62 1.45 16 2 N -0.60 -8.03 2.82 -182.08 -0.51 -8.54 16 3 C 0.13 1.52 4.00 -4.04 -0.02 1.50 16 4 C -0.10 -1.05 3.15 -89.50 -0.28 -1.34 16 5 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 6 C -0.13 -1.53 5.40 -25.03 -0.14 -1.66 16 7 C -0.12 -1.12 6.91 -24.70 -0.17 -1.29 16 8 C -0.16 -1.18 6.56 -25.07 -0.16 -1.35 16 9 C 0.11 0.85 4.24 -25.61 -0.11 0.75 16 10 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 11 O -0.56 -4.28 11.43 -35.23 -0.40 -4.69 16 12 C 0.52 8.73 4.79 -11.59 -0.06 8.67 16 13 O -0.52 -9.43 14.36 5.50 0.08 -9.35 16 14 C 0.51 9.94 5.61 -11.58 -0.06 9.87 16 15 O -0.52 -11.91 16.40 5.50 0.09 -11.82 16 16 N -0.59 -11.21 2.97 -173.28 -0.52 -11.72 16 17 C 0.11 1.68 6.36 -3.71 -0.02 1.66 16 18 C -0.13 -1.97 6.08 -26.61 -0.16 -2.13 16 19 C -0.10 -1.88 5.11 -26.69 -0.14 -2.01 16 20 C 0.02 0.42 1.85 -91.65 -0.17 0.25 16 21 H 0.02 0.50 6.92 -51.93 -0.36 0.14 16 22 C -0.62 -16.47 8.78 -34.44 -0.30 -16.78 16 23 H 0.06 1.73 7.99 -52.48 -0.42 1.31 16 24 C 0.04 1.25 5.19 -17.82 -0.09 1.16 16 25 N -0.89 -26.49 13.69 55.43 0.76 -25.73 16 26 Si 1.02 24.97 26.69 -169.99 -4.54 20.43 16 27 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.26 -6.38 5.86 56.52 0.33 -6.05 16 30 C 0.10 2.31 5.35 -3.71 -0.02 2.29 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 33 H 0.08 1.14 6.52 -51.93 -0.34 0.80 16 34 H 0.09 0.86 7.61 -51.93 -0.40 0.46 16 35 H 0.09 1.20 7.13 -51.93 -0.37 0.83 16 36 H 0.09 1.30 5.62 -51.93 -0.29 1.01 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 42 H 0.38 1.32 9.11 45.56 0.42 1.74 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 1.02 6.28 -51.93 -0.33 0.69 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.27 8.02 8.73 -40.82 -0.36 7.67 16 50 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 51 H 0.09 2.23 4.19 -51.93 -0.22 2.01 16 LS Contribution 390.33 15.07 5.88 5.88 Total: -1.00 -32.80 390.33 -8.30 -41.10 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.86 Total: 3.40 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.28 Total: 1.04 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -0.27 Total: -46.00 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.23 Total: -25.85 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -4.54 Total: 20.43 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.80 -8.30 -41.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118520344.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.609 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds