Wall clock time and date at job start Tue Mar 31 2020 21:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46508 * 119.99958 * 2 1 4 4 C 1.53001 * 109.47034 * 270.00008 * 3 2 1 5 5 H 1.09006 * 110.01507 * 54.29972 * 4 3 2 6 6 C 1.54266 * 110.03429 * 292.90581 * 4 3 2 7 7 C 1.54960 * 104.16119 * 217.13610 * 6 4 3 8 8 C 1.54890 * 102.77509 * 37.88969 * 7 6 4 9 9 C 1.53878 * 110.02975 * 175.68870 * 4 3 2 10 10 H 1.09004 * 110.02930 * 238.62021 * 9 4 3 11 11 O 1.42897 * 110.03555 * 359.97438 * 9 4 3 12 12 C 1.34777 * 120.00282 * 180.02562 * 2 1 3 13 13 O 1.21347 * 119.99969 * 184.79050 * 12 2 1 14 14 C 1.49444 * 119.99788 * 4.78959 * 12 2 1 15 15 O 1.21351 * 120.00308 * 84.53090 * 14 12 2 16 16 N 1.34785 * 120.00068 * 264.53655 * 14 12 2 17 17 C 1.46931 * 120.62604 * 355.02139 * 16 14 12 18 18 C 1.53191 * 108.76937 * 126.37246 * 17 16 14 19 19 C 1.53039 * 109.34064 * 54.62387 * 18 17 16 20 20 C 1.53047 * 109.53577 * 298.67734 * 19 18 17 21 21 H 1.09003 * 109.49623 * 301.35112 * 20 19 18 22 22 C 1.50695 * 109.49748 * 181.28551 * 20 19 18 23 23 H 1.08004 * 120.00051 * 358.79310 * 22 20 19 24 24 C 1.37879 * 120.00115 * 178.79610 * 22 20 19 25 25 N 1.31508 * 120.00052 * 152.40099 * 24 22 20 26 26 Si 1.86799 * 119.99775 * 332.12488 * 24 22 20 27 27 H 1.48497 * 109.47210 * 180.27759 * 26 24 22 28 28 H 1.48501 * 109.47113 * 300.27351 * 26 24 22 29 29 H 1.48498 * 109.47237 * 60.27209 * 26 24 22 30 30 C 1.46921 * 120.63180 * 175.00793 * 16 14 12 31 31 H 1.08996 * 109.46618 * 274.73080 * 1 2 3 32 32 H 1.08996 * 109.46957 * 34.72651 * 1 2 3 33 33 H 1.09000 * 109.46604 * 154.72767 * 1 2 3 34 34 H 1.09001 * 109.46726 * 30.00147 * 3 2 1 35 35 H 1.08998 * 109.47073 * 150.00187 * 3 2 1 36 36 H 1.09001 * 110.48518 * 335.78945 * 6 4 3 37 37 H 1.09000 * 110.48100 * 98.42538 * 6 4 3 38 38 H 1.09000 * 110.72162 * 279.57668 * 7 6 4 39 39 H 1.09004 * 110.92254 * 156.29773 * 7 6 4 40 40 H 1.09007 * 110.48420 * 203.40213 * 8 7 6 41 41 H 1.09002 * 110.60153 * 80.81785 * 8 7 6 42 42 H 0.96696 * 114.00564 * 179.97438 * 11 9 4 43 43 H 1.09000 * 109.58541 * 246.16122 * 17 16 14 44 44 H 1.08994 * 109.58642 * 6.58664 * 17 16 14 45 45 H 1.09000 * 109.49402 * 174.58468 * 18 17 16 46 46 H 1.08999 * 109.49903 * 294.64649 * 18 17 16 47 47 H 1.09002 * 109.48755 * 178.64961 * 19 18 17 48 48 H 1.08990 * 109.43545 * 58.67944 * 19 18 17 49 49 H 0.97001 * 120.00458 * 354.71093 * 25 24 22 50 50 H 1.08994 * 109.58813 * 113.84194 * 30 16 14 51 51 H 1.08997 * 109.70340 * 353.47897 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5126 1.7460 -1.9935 6 6 3.4309 0.7349 -2.1288 7 6 4.3064 1.6451 -3.0267 8 6 4.4907 2.9116 -2.1542 9 6 3.1258 3.0940 -1.4589 10 1 2.5127 3.8010 -2.0178 11 8 3.3155 3.5620 -0.1221 12 6 2.1390 -1.1672 -0.0005 13 8 3.3492 -1.1690 0.0872 14 6 1.3957 -2.4591 -0.1092 15 8 1.0829 -2.8894 -1.1999 16 7 1.0725 -3.1464 1.0043 17 6 1.5373 -2.6958 2.3234 18 6 0.3274 -2.5638 3.2537 19 6 -0.4412 -3.8870 3.2764 20 6 -0.9468 -4.2094 1.8683 21 1 -1.5883 -3.4007 1.5180 22 6 -1.7304 -5.4963 1.8976 23 1 -1.8391 -6.0413 2.8237 24 6 -2.3084 -5.9780 0.7423 25 7 -2.5056 -7.2698 0.5948 26 14 -2.8185 -4.7949 -0.6103 27 1 -3.4168 -5.5574 -1.7353 28 1 -3.8174 -3.8342 -0.0770 29 1 -1.6268 -4.0524 -1.0939 30 6 0.2487 -4.3601 0.9222 31 1 -0.3632 0.0848 1.0242 32 1 -0.3633 0.8446 -0.5854 33 1 -0.3632 -0.9293 -0.4387 34 1 1.6084 2.0284 0.5139 35 1 3.1500 1.1385 0.5138 36 1 4.0459 0.2263 -1.3865 37 1 2.8856 0.0111 -2.7345 38 1 3.7867 1.8870 -3.9538 39 1 5.2682 1.1766 -3.2356 40 1 4.7192 3.7752 -2.7789 41 1 5.2775 2.7574 -1.4157 42 1 3.7367 4.4306 -0.0655 43 1 2.2358 -3.4253 2.7334 44 1 2.0308 -1.7289 2.2262 45 1 0.6676 -2.3234 4.2609 46 1 -0.3255 -1.7699 2.8910 47 1 -1.2891 -3.8033 3.9563 48 1 0.2194 -4.6844 3.6164 49 1 -2.1758 -7.8903 1.2635 50 1 0.8420 -5.2252 1.2181 51 1 -0.1082 -4.4936 -0.0990 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118520344.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:08 Heat of formation + Delta-G solvation = -150.387017 kcal Electronic energy + Delta-G solvation = -31696.208525 eV Core-core repulsion = 27594.036474 eV Total energy + Delta-G solvation = -4102.172051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.18913 -40.53816 -39.45625 -38.55900 -36.88454 -35.78891 -35.44930 -33.72001 -32.21312 -31.54889 -28.55788 -28.17165 -27.70072 -26.74532 -25.89807 -23.55115 -23.39268 -21.82851 -21.05541 -20.55388 -20.02194 -19.67078 -18.85766 -18.55498 -17.90519 -17.53546 -16.84822 -16.18737 -16.02603 -15.93601 -15.73197 -15.40217 -15.33471 -15.27743 -15.05529 -14.73162 -14.51257 -14.28918 -14.16855 -13.97953 -13.78743 -13.52452 -13.27716 -13.22083 -13.02756 -12.77311 -12.66106 -12.37404 -12.20866 -12.04580 -12.02297 -11.91772 -11.84621 -11.62362 -11.60107 -11.53855 -11.39990 -11.11962 -10.74042 -10.62835 -10.35948 -9.85274 -9.81716 -8.77028 -6.36080 0.93578 0.97779 1.43421 1.43844 1.51323 1.65783 2.23691 2.44670 2.94687 3.04243 3.32128 3.56258 3.65511 3.81545 3.91020 3.99320 4.06560 4.09112 4.23337 4.32718 4.36399 4.41848 4.45302 4.47861 4.54816 4.55311 4.58307 4.63886 4.72481 4.76662 4.83996 4.85899 4.88548 4.91434 4.98481 5.07237 5.13083 5.15776 5.16648 5.26061 5.28185 5.31510 5.45940 5.49612 5.59344 5.92113 6.02964 6.08494 6.12591 6.59688 6.62654 6.68713 6.99808 7.34800 8.56739 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.003233 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.714444 B = 8658.416510 C = 9158.270844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.589 5.589 3 C 0.138 3.862 4 C -0.105 4.105 5 H 0.088 0.912 6 C -0.131 4.131 7 C -0.121 4.121 8 C -0.150 4.150 9 C 0.117 3.883 10 H 0.082 0.918 11 O -0.576 6.576 12 C 0.525 3.475 13 O -0.537 6.537 14 C 0.501 3.499 15 O -0.562 6.562 16 N -0.588 5.588 17 C 0.104 3.896 18 C -0.121 4.121 19 C -0.099 4.099 20 C 0.019 3.981 21 H 0.026 0.974 22 C -0.612 4.612 23 H 0.032 0.968 24 C -0.001 4.001 25 N -0.922 5.922 26 Si 1.058 2.942 27 H -0.291 1.291 28 H -0.254 1.254 29 H -0.263 1.263 30 C 0.115 3.885 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.048 0.952 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.396 0.604 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.106 0.894 46 H 0.074 0.926 47 H 0.061 0.939 48 H 0.047 0.953 49 H 0.260 0.740 50 H 0.051 0.949 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.990 27.934 -0.300 30.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.322 5.322 3 C 0.017 3.983 4 C -0.125 4.125 5 H 0.106 0.894 6 C -0.169 4.169 7 C -0.159 4.159 8 C -0.188 4.188 9 C 0.057 3.943 10 H 0.100 0.900 11 O -0.385 6.385 12 C 0.307 3.693 13 O -0.414 6.414 14 C 0.285 3.715 15 O -0.440 6.440 16 N -0.320 5.320 17 C -0.017 4.017 18 C -0.159 4.159 19 C -0.136 4.136 20 C -0.001 4.001 21 H 0.044 0.956 22 C -0.649 4.649 23 H 0.050 0.950 24 C -0.203 4.203 25 N -0.556 5.556 26 Si 0.881 3.119 27 H -0.218 1.218 28 H -0.179 1.179 29 H -0.189 1.189 30 C -0.007 4.007 31 H 0.107 0.893 32 H 0.127 0.873 33 H 0.067 0.933 34 H 0.130 0.870 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.246 0.754 43 H 0.099 0.901 44 H 0.107 0.893 45 H 0.124 0.876 46 H 0.093 0.907 47 H 0.079 0.921 48 H 0.066 0.934 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.421 27.227 -2.106 29.229 hybrid contribution 0.877 -1.038 1.080 1.735 sum 11.298 26.189 -1.027 28.541 Atomic orbital electron populations 1.22165 0.77237 1.03918 1.04449 1.48013 1.08436 1.05238 1.70506 1.21478 0.97752 0.82241 0.96793 1.22289 0.99159 0.94531 0.96487 0.89395 1.22572 0.97884 0.97515 0.98917 1.22419 0.99560 0.95746 0.98173 1.23078 0.97919 0.98394 0.99374 1.22344 0.95027 0.93618 0.83296 0.90000 1.86480 1.84191 1.41177 1.26609 1.19948 0.87511 0.84831 0.76966 1.90725 1.13727 1.86832 1.50143 1.20770 0.79453 0.86457 0.84867 1.90773 1.54822 1.70494 1.27949 1.48556 1.49606 1.26762 1.07110 1.22030 0.97659 1.00672 0.81354 1.21932 0.95923 0.97763 1.00304 1.21395 0.99212 0.96622 0.96420 1.19173 0.91688 0.95657 0.93569 0.95639 1.22002 1.37492 1.09428 0.96011 0.94963 1.26812 0.93800 0.98105 1.01568 1.70954 1.46058 1.03152 1.35425 0.83875 0.78274 0.75207 0.74532 1.21756 1.17864 1.18868 1.22325 0.92559 0.84223 1.01572 0.89344 0.87311 0.93270 0.86979 0.90669 0.92051 0.94305 0.90496 0.91782 0.89170 0.91234 0.75413 0.90148 0.89264 0.87607 0.90745 0.92059 0.93396 0.93082 0.93071 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.32 10.39 127.77 1.33 2.64 16 2 N -0.59 -14.46 2.82 -848.35 -2.40 -16.86 16 3 C 0.14 2.74 4.00 86.38 0.35 3.09 16 4 C -0.11 -1.90 3.15 -10.07 -0.03 -1.93 16 5 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 6 C -0.13 -3.09 5.40 31.69 0.17 -2.92 16 7 C -0.12 -2.06 6.91 31.91 0.22 -1.84 16 8 C -0.15 -1.84 6.56 31.67 0.21 -1.63 16 9 C 0.12 1.41 4.24 31.32 0.13 1.55 16 10 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 11 O -0.58 -6.57 11.43 -148.98 -1.70 -8.27 16 12 C 0.53 17.29 4.79 87.27 0.42 17.71 16 13 O -0.54 -19.56 14.36 -3.24 -0.05 -19.61 16 14 C 0.50 19.77 5.61 87.27 0.49 20.26 16 15 O -0.56 -26.57 16.40 -3.25 -0.05 -26.63 16 16 N -0.59 -22.09 2.97 -820.49 -2.44 -24.53 16 17 C 0.10 2.98 6.36 86.36 0.55 3.53 16 18 C -0.12 -3.11 6.08 30.67 0.19 -2.93 16 19 C -0.10 -3.48 5.11 30.62 0.16 -3.32 16 20 C 0.02 0.84 1.85 -11.46 -0.02 0.82 16 21 H 0.03 1.13 6.92 -2.39 -0.02 1.12 16 22 C -0.61 -33.53 8.78 25.60 0.22 -33.31 16 23 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 24 C 0.00 -0.04 5.19 84.66 0.44 0.40 16 25 N -0.92 -57.28 13.69 21.45 0.29 -56.98 16 26 Si 1.06 51.42 26.69 68.60 1.83 53.25 16 27 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 28 H -0.25 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.26 -12.72 5.86 99.48 0.58 -12.13 16 30 C 0.11 5.18 5.35 86.37 0.46 5.64 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.11 1.53 8.11 -2.39 -0.02 1.51 16 33 H 0.05 1.34 6.52 -2.39 -0.02 1.33 16 34 H 0.11 1.72 7.61 -2.39 -0.02 1.70 16 35 H 0.07 1.81 7.13 -2.39 -0.02 1.79 16 36 H 0.06 1.81 5.62 -2.39 -0.01 1.80 16 37 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 42 H 0.40 1.19 9.11 -74.06 -0.67 0.51 16 43 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.09 2.28 6.28 -2.39 -0.02 2.27 16 45 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 48 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.26 16.17 8.73 -92.71 -0.81 15.36 16 50 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 51 H 0.06 3.11 4.19 -2.39 -0.01 3.10 16 Total: -1.00 -75.99 390.33 0.86 -75.14 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.09 Total: 16.74 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 5.28 Total: 7.75 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -4.54 Total: -98.37 kcal Atomic # 8 Polarization: -52.70 SS G_CDS: -1.80 Total: -54.50 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 1.83 Total: 53.25 kcal Total: -75.99 0.86 -75.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118520344.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.252 kcal (2) G-P(sol) polarization free energy of solvation -75.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds