Wall clock time and date at job start Tue Mar 31 2020 21:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00112 * 2 1 4 4 C 1.52996 * 109.47069 * 179.97438 * 3 2 1 5 5 C 1.50695 * 110.46062 * 59.30459 * 4 3 2 6 6 O 1.21280 * 120.00758 * 120.69349 * 5 4 3 7 7 N 1.34778 * 119.99544 * 300.70256 * 5 4 3 8 8 C 1.46498 * 120.00077 * 179.97438 * 7 5 4 9 9 C 1.53949 * 113.58372 * 154.99552 * 8 7 5 10 10 C 1.52907 * 86.78219 * 89.94609 * 9 8 7 11 11 C 1.52909 * 121.13447 * 150.61484 * 10 9 8 12 12 C 1.53953 * 86.78141 * 100.82561 * 11 10 9 13 13 N 1.46501 * 113.57950 * 139.33550 * 12 11 10 14 14 C 1.36935 * 119.99801 * 155.00300 * 13 12 11 15 15 H 1.08003 * 120.00239 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99745 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00372 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99955 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46845 * 269.99982 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99472 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00079 * 18 16 14 22 22 C 1.52905 * 121.13969 * 259.17975 * 10 9 8 23 23 C 1.52912 * 88.04302 * 24.90436 * 10 9 8 24 24 C 1.54515 * 110.51074 * 181.90604 * 4 3 2 25 25 C 1.54476 * 104.06170 * 118.78132 * 24 4 3 26 26 O 1.44425 * 104.80743 * 23.98232 * 25 24 4 27 27 C 1.44787 * 105.29265 * 319.45004 * 26 25 24 28 28 H 1.08996 * 109.46813 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46639 * 299.99733 * 1 2 3 30 30 H 1.09000 * 109.46829 * 59.99520 * 1 2 3 31 31 H 1.08999 * 109.47032 * 60.00457 * 3 2 1 32 32 H 1.08994 * 109.47181 * 300.00267 * 3 2 1 33 33 H 0.97004 * 120.00187 * 359.97438 * 7 5 4 34 34 H 1.09003 * 112.82304 * 23.90804 * 8 7 5 35 35 H 1.09004 * 113.65998 * 335.47584 * 9 8 7 36 36 H 1.09001 * 113.74843 * 204.43483 * 9 8 7 37 37 H 1.09000 * 113.66663 * 346.35193 * 11 10 9 38 38 H 1.09000 * 113.74721 * 215.30753 * 11 10 9 39 39 H 1.09004 * 113.57830 * 270.04972 * 12 11 10 40 40 H 0.97000 * 119.99781 * 335.00080 * 13 12 11 41 41 H 0.97000 * 119.99954 * 359.97438 * 17 16 14 42 42 H 1.09000 * 113.66237 * 144.70985 * 22 10 9 43 43 H 1.08995 * 113.66228 * 13.64957 * 22 10 9 44 44 H 1.08999 * 113.66584 * 89.56975 * 23 10 9 45 45 H 1.09001 * 113.66027 * 220.63011 * 23 10 9 46 46 H 1.08999 * 110.51382 * 237.42857 * 24 4 3 47 47 H 1.08998 * 110.50977 * 0.02562 * 24 4 3 48 48 H 1.09009 * 110.37197 * 142.81175 * 25 24 4 49 49 H 1.08999 * 110.37711 * 265.14388 * 25 24 4 50 50 H 1.08997 * 110.42856 * 281.77644 * 27 26 25 51 51 H 1.08997 * 110.48671 * 159.32403 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0041 0.4243 -1.2131 6 8 4.7625 0.9481 -2.0014 7 7 3.5804 -0.8378 -1.4227 8 6 4.0355 -1.5769 -2.6029 9 6 3.9987 -3.1055 -2.4244 10 6 2.5703 -3.0481 -2.9669 11 6 1.9684 -4.2253 -3.7350 12 6 1.2409 -4.5931 -2.4290 13 7 -0.1422 -5.0316 -2.6321 14 6 -0.7429 -5.8499 -1.7131 15 1 -0.1970 -6.1725 -0.8388 16 6 -2.0532 -6.2658 -1.9058 17 7 -2.7183 -5.8731 -2.9715 18 14 -2.8730 -7.3816 -0.6519 19 1 -2.6310 -8.8001 -1.0187 20 1 -2.3054 -7.1147 0.6942 21 1 -4.3341 -7.1172 -0.6344 22 6 1.3648 -3.1118 -2.0284 23 6 2.9493 -1.7497 -3.6802 24 6 4.1894 2.5838 0.0488 25 6 4.9979 2.5751 1.3650 26 8 5.2532 1.1789 1.6322 27 6 4.0232 0.4942 1.2936 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 2.9740 -1.2569 -0.7921 34 1 4.9829 -1.2063 -2.9944 35 1 4.0591 -3.4260 -1.3843 36 1 4.6922 -3.6401 -3.0736 37 1 2.7046 -4.9652 -4.0490 38 1 1.2973 -3.9269 -4.5404 39 1 1.8088 -5.2683 -1.7888 40 1 -0.6323 -4.7421 -3.4175 41 1 -2.2931 -5.2928 -3.6221 42 1 0.5242 -2.4989 -2.3537 43 1 1.6190 -2.9623 -0.9791 44 1 3.3482 -1.9018 -4.6831 45 1 2.1713 -0.9872 -3.6433 46 1 4.8516 2.7255 -0.8053 47 1 3.4260 3.3615 0.0726 48 1 5.9364 3.1148 1.2375 49 1 4.4130 3.0152 2.1727 50 1 3.2885 0.6162 2.0894 51 1 4.2133 -0.5634 1.1105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121481281.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:12 Heat of formation + Delta-G solvation = -69.049049 kcal Electronic energy + Delta-G solvation = -31323.680192 eV Core-core repulsion = 27225.035220 eV Total energy + Delta-G solvation = -4098.644972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.18704 -40.17408 -38.30230 -37.89841 -35.89178 -33.75448 -33.35858 -32.14019 -29.88997 -29.22555 -27.26739 -25.78282 -25.47299 -25.26124 -24.36423 -23.59034 -22.91643 -21.81740 -19.97594 -19.80109 -17.96679 -17.64118 -17.29465 -16.84957 -16.56862 -16.11166 -16.08628 -15.56713 -15.23905 -15.12291 -14.84345 -14.57635 -14.47903 -14.21376 -13.76950 -13.64205 -13.41433 -13.02233 -12.75137 -12.51872 -12.32071 -12.23226 -12.16058 -11.83816 -11.72487 -11.69620 -11.34683 -11.24718 -11.21661 -10.97576 -10.71530 -10.55966 -10.30271 -10.14104 -10.05673 -9.96761 -9.84777 -9.66431 -9.62396 -9.10602 -8.93917 -8.84159 -7.03019 -6.12187 -3.11507 2.45109 3.01319 3.30272 3.49822 3.54325 3.63402 3.68265 4.04153 4.32387 4.54616 4.57290 4.63633 4.66649 4.70854 4.71957 4.82120 4.84479 4.94469 4.95846 5.11479 5.18562 5.23037 5.29202 5.30919 5.34325 5.39803 5.46547 5.48931 5.67433 5.69662 5.77357 5.78042 5.81054 5.85125 5.86550 5.96850 6.07559 6.18940 6.19669 6.30115 6.35436 6.37290 6.51051 6.67150 6.76744 6.88010 7.07534 7.56217 7.80581 8.19536 8.73721 9.21574 10.08003 10.23839 11.36131 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014823 B = 0.002981 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.482555 B = 9391.396546 C =10409.291887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.077 3.923 4 C -0.113 4.113 5 C 0.535 3.465 6 O -0.543 6.543 7 N -0.693 5.693 8 C 0.121 3.879 9 C -0.121 4.121 10 C -0.103 4.103 11 C -0.141 4.141 12 C 0.173 3.827 13 N -0.725 5.725 14 C -0.332 4.332 15 H 0.065 0.935 16 C -0.046 4.046 17 N -0.945 5.945 18 Si 1.081 2.919 19 H -0.296 1.296 20 H -0.295 1.295 21 H -0.288 1.288 22 C -0.133 4.133 23 C -0.135 4.135 24 C -0.141 4.141 25 C 0.047 3.953 26 O -0.371 6.371 27 C 0.065 3.935 28 H 0.098 0.902 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.412 0.588 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.367 0.633 41 H 0.255 0.745 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.105 0.895 47 H 0.084 0.916 48 H 0.095 0.905 49 H 0.061 0.939 50 H 0.075 0.925 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.240 17.524 6.915 23.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C 0.000 4.000 4 C -0.117 4.117 5 C 0.320 3.680 6 O -0.421 6.421 7 N -0.345 5.345 8 C 0.015 3.985 9 C -0.159 4.159 10 C -0.104 4.104 11 C -0.180 4.180 12 C 0.061 3.939 13 N -0.364 5.364 14 C -0.463 4.463 15 H 0.083 0.917 16 C -0.243 4.243 17 N -0.590 5.590 18 Si 0.912 3.088 19 H -0.223 1.223 20 H -0.221 1.221 21 H -0.214 1.214 22 C -0.174 4.174 23 C -0.174 4.174 24 C -0.179 4.179 25 C -0.030 4.030 26 O -0.289 6.289 27 C -0.012 4.012 28 H 0.116 0.884 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.251 0.749 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.201 0.799 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.104 0.896 45 H 0.086 0.914 46 H 0.124 0.876 47 H 0.102 0.898 48 H 0.114 0.886 49 H 0.079 0.921 50 H 0.094 0.906 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.740 16.686 7.029 22.139 hybrid contribution 0.453 1.079 -0.490 1.269 sum 13.193 17.765 6.538 23.074 Atomic orbital electron populations 1.22824 0.79338 1.04116 0.99925 1.87733 1.21012 1.26693 1.95431 1.22481 0.90021 0.86052 1.01458 1.22229 0.95654 0.97605 0.96162 1.19892 0.80107 0.81891 0.86073 1.90648 1.36083 1.68302 1.47077 1.45747 1.48798 1.13804 1.26153 1.21855 0.98110 0.91940 0.86549 1.23029 0.96498 0.94512 1.01898 1.22331 0.94206 0.95267 0.98607 1.23290 0.99432 0.96481 0.98774 1.21495 0.86380 0.91993 0.93991 1.42434 1.09442 1.58207 1.26357 1.20129 0.98283 1.24977 1.02915 0.91713 1.25760 0.93860 1.02649 1.02068 1.70852 1.38953 1.37481 1.11762 0.83214 0.76030 0.75482 0.74042 1.22330 1.22135 1.21433 1.23509 0.95034 1.01789 0.97108 1.23207 0.98587 0.97758 0.97862 1.23002 1.00441 0.93659 1.00772 1.23438 1.00518 0.83888 0.95186 1.89230 1.33696 1.18603 1.87369 1.23490 0.86945 0.97717 0.93097 0.88389 0.93903 0.93854 0.91768 0.92289 0.74905 0.88525 0.90910 0.88785 0.92218 0.90569 0.90789 0.79933 0.93370 0.90569 0.92720 0.89581 0.91438 0.87638 0.89775 0.88631 0.92052 0.90649 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.44 16 2 O -0.39 -4.01 8.01 -35.23 -0.28 -4.29 16 3 C 0.08 0.67 4.54 37.16 0.17 0.84 16 4 C -0.11 -1.12 0.75 -154.09 -0.12 -1.24 16 5 C 0.54 6.99 6.47 -10.99 -0.07 6.91 16 6 O -0.54 -8.70 14.88 5.56 0.08 -8.62 16 7 N -0.69 -8.62 4.66 -52.85 -0.25 -8.87 16 8 C 0.12 1.53 4.31 -66.95 -0.29 1.24 16 9 C -0.12 -1.48 7.59 -26.28 -0.20 -1.68 16 10 C -0.10 -1.45 1.02 -154.71 -0.16 -1.61 16 11 C -0.14 -2.30 7.59 -26.28 -0.20 -2.50 16 12 C 0.17 3.38 4.48 -66.95 -0.30 3.08 16 13 N -0.73 -17.84 5.40 -52.47 -0.28 -18.12 16 14 C -0.33 -9.18 9.97 -15.06 -0.15 -9.33 16 15 H 0.06 1.77 7.83 -52.48 -0.41 1.35 16 16 C -0.05 -1.32 5.50 -17.43 -0.10 -1.41 16 17 N -0.95 -28.93 13.70 55.49 0.76 -28.17 16 18 Si 1.08 25.63 29.92 -169.99 -5.09 20.55 16 19 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C -0.13 -2.20 7.18 -26.28 -0.19 -2.39 16 23 C -0.14 -1.77 7.64 -26.28 -0.20 -1.98 16 24 C -0.14 -1.21 6.32 -25.16 -0.16 -1.37 16 25 C 0.05 0.37 7.63 37.93 0.29 0.66 16 26 O -0.37 -4.15 11.66 -35.23 -0.41 -4.56 16 27 C 0.06 0.63 6.52 37.94 0.25 0.88 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.43 8.12 -51.93 -0.42 0.00 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.41 5.02 5.48 -40.82 -0.22 4.79 16 34 H 0.10 1.28 7.47 -51.93 -0.39 0.90 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.30 8.12 -51.93 -0.42 0.88 16 39 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 40 H 0.37 9.38 6.75 -40.82 -0.28 9.10 16 41 H 0.26 7.69 6.77 -40.82 -0.28 7.41 16 42 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.05 0.86 7.47 -51.93 -0.39 0.48 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.11 1.12 6.50 -51.93 -0.34 0.78 16 47 H 0.08 0.53 7.73 -51.93 -0.40 0.12 16 48 H 0.10 0.67 8.14 -51.92 -0.42 0.24 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.08 0.62 7.85 -51.93 -0.41 0.21 16 51 H 0.10 1.01 7.59 -51.93 -0.39 0.61 16 LS Contribution 401.58 15.07 6.05 6.05 Total: -1.00 -33.06 401.58 -8.36 -41.42 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -8.64 Total: 13.07 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -0.31 Total: -8.45 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.23 Total: -55.16 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.61 Total: -17.47 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.09 Total: 20.55 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.06 -8.36 -41.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121481281.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.633 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds