Wall clock time and date at job start Tue Mar 31 2020 21:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00112 * 2 1 4 4 C 1.52996 * 109.47069 * 179.97438 * 3 2 1 5 5 C 1.50695 * 110.46062 * 59.30459 * 4 3 2 6 6 O 1.21280 * 120.00758 * 120.69349 * 5 4 3 7 7 N 1.34778 * 119.99544 * 300.70256 * 5 4 3 8 8 C 1.46498 * 120.00077 * 179.97438 * 7 5 4 9 9 C 1.53949 * 113.58372 * 154.99552 * 8 7 5 10 10 C 1.52907 * 86.78219 * 89.94609 * 9 8 7 11 11 C 1.52909 * 121.13447 * 150.61484 * 10 9 8 12 12 C 1.53953 * 86.78141 * 100.82561 * 11 10 9 13 13 N 1.46501 * 113.57950 * 139.33550 * 12 11 10 14 14 C 1.36935 * 119.99801 * 155.00300 * 13 12 11 15 15 H 1.08003 * 120.00239 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99745 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00372 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99955 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46845 * 269.99982 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99472 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00079 * 18 16 14 22 22 C 1.52905 * 121.13969 * 259.17975 * 10 9 8 23 23 C 1.52912 * 88.04302 * 24.90436 * 10 9 8 24 24 C 1.54515 * 110.51074 * 181.90604 * 4 3 2 25 25 C 1.54476 * 104.06170 * 118.78132 * 24 4 3 26 26 O 1.44425 * 104.80743 * 23.98232 * 25 24 4 27 27 C 1.44787 * 105.29265 * 319.45004 * 26 25 24 28 28 H 1.08996 * 109.46813 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46639 * 299.99733 * 1 2 3 30 30 H 1.09000 * 109.46829 * 59.99520 * 1 2 3 31 31 H 1.08999 * 109.47032 * 60.00457 * 3 2 1 32 32 H 1.08994 * 109.47181 * 300.00267 * 3 2 1 33 33 H 0.97004 * 120.00187 * 359.97438 * 7 5 4 34 34 H 1.09003 * 112.82304 * 23.90804 * 8 7 5 35 35 H 1.09004 * 113.65998 * 335.47584 * 9 8 7 36 36 H 1.09001 * 113.74843 * 204.43483 * 9 8 7 37 37 H 1.09000 * 113.66663 * 346.35193 * 11 10 9 38 38 H 1.09000 * 113.74721 * 215.30753 * 11 10 9 39 39 H 1.09004 * 113.57830 * 270.04972 * 12 11 10 40 40 H 0.97000 * 119.99781 * 335.00080 * 13 12 11 41 41 H 0.97000 * 119.99954 * 359.97438 * 17 16 14 42 42 H 1.09000 * 113.66237 * 144.70985 * 22 10 9 43 43 H 1.08995 * 113.66228 * 13.64957 * 22 10 9 44 44 H 1.08999 * 113.66584 * 89.56975 * 23 10 9 45 45 H 1.09001 * 113.66027 * 220.63011 * 23 10 9 46 46 H 1.08999 * 110.51382 * 237.42857 * 24 4 3 47 47 H 1.08998 * 110.50977 * 0.02562 * 24 4 3 48 48 H 1.09009 * 110.37197 * 142.81175 * 25 24 4 49 49 H 1.08999 * 110.37711 * 265.14388 * 25 24 4 50 50 H 1.08997 * 110.42856 * 281.77644 * 27 26 25 51 51 H 1.08997 * 110.48671 * 159.32403 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0041 0.4243 -1.2131 6 8 4.7625 0.9481 -2.0014 7 7 3.5804 -0.8378 -1.4227 8 6 4.0355 -1.5769 -2.6029 9 6 3.9987 -3.1055 -2.4244 10 6 2.5703 -3.0481 -2.9669 11 6 1.9684 -4.2253 -3.7350 12 6 1.2409 -4.5931 -2.4290 13 7 -0.1422 -5.0316 -2.6321 14 6 -0.7429 -5.8499 -1.7131 15 1 -0.1970 -6.1725 -0.8388 16 6 -2.0532 -6.2658 -1.9058 17 7 -2.7183 -5.8731 -2.9715 18 14 -2.8730 -7.3816 -0.6519 19 1 -2.6310 -8.8001 -1.0187 20 1 -2.3054 -7.1147 0.6942 21 1 -4.3341 -7.1172 -0.6344 22 6 1.3648 -3.1118 -2.0284 23 6 2.9493 -1.7497 -3.6802 24 6 4.1894 2.5838 0.0488 25 6 4.9979 2.5751 1.3650 26 8 5.2532 1.1789 1.6322 27 6 4.0232 0.4942 1.2936 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 2.9740 -1.2569 -0.7921 34 1 4.9829 -1.2063 -2.9944 35 1 4.0591 -3.4260 -1.3843 36 1 4.6922 -3.6401 -3.0736 37 1 2.7046 -4.9652 -4.0490 38 1 1.2973 -3.9269 -4.5404 39 1 1.8088 -5.2683 -1.7888 40 1 -0.6323 -4.7421 -3.4175 41 1 -2.2931 -5.2928 -3.6221 42 1 0.5242 -2.4989 -2.3537 43 1 1.6190 -2.9623 -0.9791 44 1 3.3482 -1.9018 -4.6831 45 1 2.1713 -0.9872 -3.6433 46 1 4.8516 2.7255 -0.8053 47 1 3.4260 3.3615 0.0726 48 1 5.9364 3.1148 1.2375 49 1 4.4130 3.0152 2.1727 50 1 3.2885 0.6162 2.0894 51 1 4.2133 -0.5634 1.1105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121481281.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:11 Heat of formation + Delta-G solvation = -91.570083 kcal Electronic energy + Delta-G solvation = -31324.656777 eV Core-core repulsion = 27225.035220 eV Total energy + Delta-G solvation = -4099.621557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.15969 -41.24757 -39.29577 -38.64759 -37.35576 -35.40365 -34.28630 -33.36050 -31.22907 -30.45602 -27.99932 -26.84715 -26.64202 -26.19200 -25.99638 -24.91075 -23.80984 -22.98806 -21.25909 -20.77216 -19.55783 -18.91793 -18.51040 -17.62493 -17.43946 -16.92789 -16.82986 -16.81478 -16.39249 -16.29752 -15.96544 -15.92222 -15.54238 -15.48030 -15.32631 -14.71602 -14.53722 -13.88484 -13.73706 -13.72431 -13.63286 -13.34110 -13.03497 -12.92718 -12.79813 -12.66902 -12.52974 -12.48554 -12.37026 -12.09814 -12.04216 -11.91906 -11.87833 -11.48968 -11.26983 -11.18016 -11.04828 -10.84331 -10.78386 -10.65676 -10.56756 -9.99706 -9.06078 -8.37015 -5.30144 1.47411 1.59229 1.69501 1.83602 2.08571 2.55438 2.72886 2.94550 3.32103 3.39527 3.44964 3.49956 3.54212 3.66258 3.79366 3.81532 3.85561 3.94355 4.09138 4.15905 4.25884 4.28250 4.32732 4.42980 4.48423 4.51570 4.54632 4.55564 4.62472 4.66254 4.77558 4.78667 4.82329 4.83455 4.87790 4.89551 4.91937 4.96352 5.01486 5.09771 5.11911 5.17961 5.40923 5.58794 5.65182 5.69085 5.71254 6.05832 6.51299 6.55375 7.11980 7.19595 8.02699 8.15768 9.14848 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014823 B = 0.002981 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.482555 B = 9391.396546 C =10409.291887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.405 6.405 3 C 0.078 3.922 4 C -0.110 4.110 5 C 0.528 3.472 6 O -0.578 6.578 7 N -0.690 5.690 8 C 0.121 3.879 9 C -0.110 4.110 10 C -0.090 4.090 11 C -0.132 4.132 12 C 0.153 3.847 13 N -0.740 5.740 14 C -0.328 4.328 15 H 0.067 0.933 16 C -0.107 4.107 17 N -0.978 5.978 18 Si 1.128 2.872 19 H -0.287 1.287 20 H -0.271 1.271 21 H -0.294 1.294 22 C -0.119 4.119 23 C -0.130 4.130 24 C -0.138 4.138 25 C 0.044 3.956 26 O -0.398 6.398 27 C 0.066 3.934 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.414 0.586 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.358 0.642 41 H 0.243 0.757 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.100 0.900 45 H 0.055 0.945 46 H 0.081 0.919 47 H 0.111 0.889 48 H 0.102 0.898 49 H 0.088 0.912 50 H 0.096 0.904 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.132 18.368 8.515 24.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.325 6.325 3 C 0.001 3.999 4 C -0.113 4.113 5 C 0.315 3.685 6 O -0.458 6.458 7 N -0.342 5.342 8 C 0.015 3.985 9 C -0.148 4.148 10 C -0.091 4.091 11 C -0.171 4.171 12 C 0.043 3.957 13 N -0.379 5.379 14 C -0.459 4.459 15 H 0.085 0.915 16 C -0.297 4.297 17 N -0.627 5.627 18 Si 0.953 3.047 19 H -0.214 1.214 20 H -0.196 1.196 21 H -0.221 1.221 22 C -0.160 4.160 23 C -0.169 4.169 24 C -0.176 4.176 25 C -0.032 4.032 26 O -0.317 6.317 27 C -0.011 4.011 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.253 0.747 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.133 0.867 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.190 0.810 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.119 0.881 45 H 0.074 0.926 46 H 0.100 0.900 47 H 0.129 0.871 48 H 0.120 0.880 49 H 0.106 0.894 50 H 0.114 0.886 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.690 17.548 8.647 23.877 hybrid contribution 0.268 0.856 -1.013 1.353 sum 13.958 18.403 7.635 24.327 Atomic orbital electron populations 1.22791 0.79141 1.03175 1.00990 1.87697 1.21302 1.27848 1.95611 1.22582 0.88871 0.85584 1.02847 1.22259 0.96562 0.97877 0.94637 1.20508 0.79431 0.81893 0.86669 1.90630 1.37632 1.69004 1.48564 1.45793 1.48553 1.13841 1.26005 1.21831 0.97719 0.92363 0.86546 1.23054 0.95006 0.94206 1.02535 1.22186 0.94468 0.94988 0.97463 1.23168 0.99148 0.97627 0.97111 1.21860 0.84226 0.93291 0.96284 1.42624 1.11294 1.58347 1.25677 1.20461 0.98348 1.24089 1.03034 0.91519 1.27147 0.95129 1.04256 1.03202 1.70965 1.39554 1.39185 1.12968 0.82615 0.74803 0.74154 0.73120 1.21407 1.19637 1.22086 1.23218 0.95781 0.98867 0.98105 1.23211 0.98381 0.96502 0.98789 1.23000 1.00747 0.93621 1.00201 1.23641 1.01328 0.82654 0.95594 1.89199 1.34631 1.20304 1.87555 1.23539 0.87039 0.97094 0.93474 0.90348 0.91689 0.93945 0.88757 0.92414 0.74691 0.88853 0.90477 0.86733 0.90872 0.91492 0.91183 0.80955 0.94633 0.92227 0.92010 0.88131 0.92590 0.90001 0.87054 0.88005 0.89424 0.88604 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.41 -7.74 8.01 -148.98 -1.19 -8.93 16 3 C 0.08 1.17 4.54 71.98 0.33 1.50 16 4 C -0.11 -2.01 0.75 -51.91 -0.04 -2.04 16 5 C 0.53 13.44 6.47 87.66 0.57 14.01 16 6 O -0.58 -18.47 14.88 -3.03 -0.05 -18.51 16 7 N -0.69 -16.58 4.66 -439.51 -2.05 -18.63 16 8 C 0.12 2.90 4.31 45.63 0.20 3.10 16 9 C -0.11 -2.44 7.59 30.88 0.23 -2.21 16 10 C -0.09 -2.42 1.02 -52.31 -0.05 -2.48 16 11 C -0.13 -4.19 7.59 30.89 0.23 -3.96 16 12 C 0.15 5.93 4.48 45.63 0.20 6.13 16 13 N -0.74 -37.00 5.40 -319.91 -1.73 -38.73 16 14 C -0.33 -18.22 9.97 84.03 0.84 -17.39 16 15 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 16 C -0.11 -6.14 5.50 84.86 0.47 -5.67 16 17 N -0.98 -61.15 13.70 21.65 0.30 -60.85 16 18 Si 1.13 51.55 29.92 68.60 2.05 53.60 16 19 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 22 C -0.12 -3.89 7.18 30.88 0.22 -3.67 16 23 C -0.13 -3.25 7.64 30.89 0.24 -3.01 16 24 C -0.14 -2.12 6.32 31.61 0.20 -1.92 16 25 C 0.04 0.61 7.63 72.48 0.55 1.16 16 26 O -0.40 -8.32 11.66 -148.98 -1.74 -10.05 16 27 C 0.07 1.17 6.52 72.49 0.47 1.64 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.89 8.12 -2.39 -0.02 0.87 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.41 9.67 5.48 -92.71 -0.51 9.16 16 34 H 0.09 2.37 7.47 -2.39 -0.02 2.35 16 35 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 39 H 0.07 2.76 8.10 -2.38 -0.02 2.74 16 40 H 0.36 18.92 6.75 -92.71 -0.63 18.29 16 41 H 0.24 15.18 6.77 -92.71 -0.63 14.55 16 42 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.06 1.91 7.47 -2.39 -0.02 1.89 16 44 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.08 1.69 6.50 -2.39 -0.02 1.68 16 47 H 0.11 1.06 7.73 -2.39 -0.02 1.04 16 48 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 49 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.10 1.30 7.85 -2.39 -0.02 1.28 16 51 H 0.09 1.71 7.59 -2.39 -0.02 1.69 16 Total: -1.00 -72.53 401.58 1.44 -71.09 By element: Atomic # 1 Polarization: 44.01 SS G_CDS: -0.06 Total: 43.95 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 5.91 Total: -12.93 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -3.48 Total: -118.21 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -2.98 Total: -37.50 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.05 Total: 53.60 kcal Total: -72.53 1.44 -71.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121481281.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.483 kcal (2) G-P(sol) polarization free energy of solvation -72.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds