Wall clock time and date at job start Tue Mar 31 2020 21:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 114.00170 * 2 1 4 4 H 1.09000 * 109.47018 * 29.99843 * 3 2 1 5 5 C 1.50699 * 109.47096 * 270.00502 * 3 2 1 6 6 O 1.21277 * 120.00168 * 354.99502 * 5 3 2 7 7 N 1.34779 * 119.99989 * 175.00307 * 5 3 2 8 8 C 1.46494 * 119.99858 * 179.97438 * 7 5 3 9 9 C 1.53955 * 113.57895 * 204.99687 * 8 7 5 10 10 C 1.52914 * 86.78137 * 220.66567 * 9 8 7 11 11 C 1.52910 * 121.13319 * 150.61590 * 10 9 8 12 12 C 1.53957 * 86.78122 * 100.81974 * 11 10 9 13 13 N 1.46499 * 113.57824 * 139.33249 * 12 11 10 14 14 C 1.36935 * 120.00115 * 154.99964 * 13 12 11 15 15 H 1.08000 * 119.99844 * 0.02562 * 14 13 12 16 16 C 1.38806 * 120.00336 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99903 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00055 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47300 * 89.99698 * 18 16 14 20 20 H 1.48504 * 109.47136 * 209.99469 * 18 16 14 21 21 H 1.48495 * 109.47325 * 329.99731 * 18 16 14 22 22 C 1.52909 * 121.13539 * 259.17710 * 10 9 8 23 23 C 1.52904 * 88.04475 * 24.89810 * 10 9 8 24 24 C 1.52992 * 109.46942 * 150.00129 * 3 2 1 25 25 H 1.08999 * 110.80625 * 63.63204 * 24 3 2 26 26 C 1.54812 * 110.91050 * 299.99923 * 24 3 2 27 27 C 1.54099 * 104.18881 * 220.92147 * 26 24 3 28 28 O 1.43747 * 107.29609 * 357.97207 * 27 26 24 29 29 C 1.44379 * 106.97370 * 26.50915 * 28 27 26 30 30 H 1.08999 * 109.46656 * 300.00253 * 1 2 3 31 31 H 1.08998 * 109.46920 * 59.99741 * 1 2 3 32 32 H 1.08994 * 109.47384 * 179.97438 * 1 2 3 33 33 H 0.97000 * 119.99899 * 359.97438 * 7 5 3 34 34 H 1.08997 * 112.88355 * 336.13550 * 8 7 5 35 35 H 1.09004 * 113.66140 * 106.19421 * 9 8 7 36 36 H 1.09001 * 113.74348 * 335.15174 * 9 8 7 37 37 H 1.09003 * 113.66688 * 346.35112 * 11 10 9 38 38 H 1.08997 * 113.74743 * 215.30368 * 11 10 9 39 39 H 1.09000 * 113.57875 * 270.12813 * 12 11 10 40 40 H 0.97001 * 120.00302 * 335.00467 * 13 12 11 41 41 H 0.97002 * 119.99841 * 180.02562 * 17 16 14 42 42 H 1.08993 * 113.65927 * 144.70919 * 22 10 9 43 43 H 1.08999 * 113.66533 * 13.65097 * 22 10 9 44 44 H 1.09002 * 113.66206 * 89.56808 * 23 10 9 45 45 H 1.08996 * 113.66484 * 220.63248 * 23 10 9 46 46 H 1.08996 * 110.48636 * 339.60214 * 26 24 3 47 47 H 1.09000 * 110.48511 * 102.24341 * 26 24 3 48 48 H 1.09005 * 109.87831 * 117.39558 * 27 26 24 49 49 H 1.08996 * 109.87768 * 238.54058 * 27 26 24 50 50 H 1.08998 * 110.61824 * 201.44167 * 29 28 27 51 51 H 1.09000 * 110.61742 * 78.44407 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0106 -2.3413 7 7 2.6589 3.0124 -1.6686 8 6 2.8580 3.4583 -3.0497 9 6 3.8908 4.5916 -3.1882 10 6 2.9422 5.2143 -4.2132 11 6 2.8844 6.7283 -4.4194 12 6 3.7589 6.5045 -5.6666 13 7 3.3657 7.3270 -6.8133 14 6 4.2849 7.6397 -7.7790 15 1 5.2996 7.2795 -7.6954 16 6 3.9125 8.4194 -8.8652 17 7 2.6757 8.8579 -8.9674 18 14 5.1663 8.8453 -10.1829 19 1 5.1464 7.8030 -11.2404 20 1 4.8290 10.1626 -10.7798 21 1 6.5200 8.9088 -9.5759 22 6 3.1964 5.0722 -5.7143 23 6 1.7972 4.4651 -3.5308 24 6 3.3589 1.2631 0.7212 25 1 4.0630 0.6239 0.1885 26 6 3.1873 0.7949 2.1868 27 6 4.1366 1.7066 2.9882 28 8 4.8062 2.5605 2.0454 29 6 3.9346 2.6909 0.9018 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.8470 3.6154 -0.9323 34 1 3.0213 2.6327 -3.7423 35 1 4.8414 4.2678 -3.6120 36 1 4.0111 5.1886 -2.2842 37 1 3.3813 7.2963 -3.6329 38 1 1.8862 7.1026 -4.6465 39 1 4.8288 6.5462 -5.4621 40 1 2.4542 7.6503 -6.8886 41 1 2.4154 9.4025 -9.7267 42 1 2.2854 4.9795 -6.3054 43 1 3.9425 4.3173 -5.9621 44 1 1.3279 5.0258 -2.7224 45 1 1.0754 4.0401 -4.2283 46 1 2.1571 0.9351 2.5139 47 1 3.4829 -0.2491 2.2908 48 1 3.5640 2.3098 3.6929 49 1 4.8674 1.1011 3.5241 50 1 4.5008 2.9908 0.0200 51 1 3.1359 3.4036 1.1072 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121482686.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:52 Heat of formation + Delta-G solvation = -69.910455 kcal Electronic energy + Delta-G solvation = -29830.131970 eV Core-core repulsion = 25731.449645 eV Total energy + Delta-G solvation = -4098.682325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.06057 -40.14787 -39.14983 -37.67451 -35.86046 -34.06341 -33.24814 -32.12980 -30.27532 -29.46006 -27.83936 -26.27046 -25.79850 -25.20655 -24.22686 -23.41482 -22.33482 -21.34158 -20.85735 -20.04462 -18.28913 -17.68831 -17.25127 -17.06543 -16.93868 -16.57351 -15.99195 -15.62728 -15.22530 -15.02389 -14.90932 -14.87071 -14.46511 -14.12789 -14.04397 -13.75507 -13.40005 -12.90870 -12.81630 -12.62278 -12.37659 -12.27780 -12.14555 -11.93376 -11.85828 -11.71341 -11.64003 -11.22567 -11.17895 -11.13384 -10.90946 -10.89871 -10.74726 -10.34843 -10.22572 -10.05942 -9.79340 -9.70842 -9.64553 -9.36351 -9.12590 -8.84913 -6.94682 -5.77313 -3.05773 2.25148 2.71106 3.17127 3.41622 3.43729 3.48954 3.50431 3.97507 4.17568 4.29886 4.40970 4.47918 4.52786 4.57882 4.58336 4.64102 4.68354 4.76555 4.79155 4.88363 4.91463 5.06648 5.12949 5.21597 5.27875 5.32766 5.38236 5.43680 5.46235 5.54402 5.57212 5.66692 5.77956 5.88520 5.92212 5.95796 6.06191 6.18789 6.22722 6.29352 6.35338 6.41055 6.44130 6.54072 6.64086 6.92494 7.13081 7.24301 7.70605 7.94250 8.41565 9.52541 10.11283 10.45457 11.45168 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.001990 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.717609 B =14069.155400 C =14840.077681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.084 3.916 4 H 0.088 0.912 5 C 0.488 3.512 6 O -0.519 6.519 7 N -0.719 5.719 8 C 0.122 3.878 9 C -0.120 4.120 10 C -0.101 4.101 11 C -0.135 4.135 12 C 0.168 3.832 13 N -0.713 5.713 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.014 4.014 17 N -0.933 5.933 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.142 4.142 23 C -0.136 4.136 24 C -0.117 4.117 25 H 0.102 0.898 26 C -0.142 4.142 27 C 0.043 3.957 28 O -0.369 6.369 29 C 0.046 3.954 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.397 0.603 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.061 0.939 49 H 0.087 0.913 50 H 0.103 0.897 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.699 -15.781 27.334 31.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C 0.022 3.978 4 H 0.106 0.894 5 C 0.272 3.728 6 O -0.394 6.394 7 N -0.373 5.373 8 C 0.018 3.982 9 C -0.158 4.158 10 C -0.103 4.103 11 C -0.174 4.174 12 C 0.056 3.944 13 N -0.351 5.351 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.210 4.210 17 N -0.581 5.581 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.183 4.183 23 C -0.174 4.174 24 C -0.136 4.136 25 H 0.120 0.880 26 C -0.179 4.179 27 C -0.034 4.034 28 O -0.287 6.287 29 C -0.031 4.031 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.233 0.767 34 H 0.133 0.867 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.104 0.896 48 H 0.079 0.921 49 H 0.105 0.895 50 H 0.121 0.879 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.404 -16.369 26.561 31.292 hybrid contribution -0.178 0.712 -0.511 0.894 sum -2.582 -15.658 26.050 30.503 Atomic orbital electron populations 1.22904 0.80247 1.03505 1.00167 1.87993 1.20298 1.24362 1.94392 1.21979 0.95872 0.87390 0.92541 0.89447 1.21312 0.77456 0.82070 0.91931 1.90737 1.49091 1.53669 1.45860 1.46319 1.67622 1.14099 1.09303 1.22666 0.97192 0.95983 0.82402 1.23059 0.97744 0.95894 0.99114 1.22080 0.95581 0.96770 0.95836 1.23264 1.01393 0.93204 0.99587 1.21547 0.96291 0.89428 0.87090 1.42423 1.11609 1.59262 1.21839 1.19308 0.92415 1.25789 0.99810 0.91108 1.24765 0.96521 1.00742 0.99007 1.69661 1.16476 1.40400 1.31594 0.86189 0.80496 0.77494 0.82011 1.21710 1.21797 1.20740 1.23607 1.01564 1.01606 0.91490 1.23265 0.97067 0.97021 1.00079 1.22771 0.95375 0.98717 0.96718 0.87984 1.22897 1.00707 1.01285 0.93047 1.23252 0.95720 0.92141 0.92278 1.88944 1.41972 1.68982 1.28848 1.23734 0.94300 0.94701 0.90364 0.93894 0.93416 0.88963 0.76728 0.86714 0.90484 0.89696 0.92255 0.90220 0.90770 0.78121 0.93502 0.90109 0.92547 0.90143 0.91097 0.90334 0.89630 0.92063 0.89497 0.87862 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.81 101.05 1.09 1.29 16 2 O -0.35 -3.41 9.58 -55.09 -0.53 -3.94 16 3 C 0.08 0.67 2.01 -27.89 -0.06 0.61 16 4 H 0.09 0.48 7.73 -51.93 -0.40 0.08 16 5 C 0.49 5.31 7.11 -10.98 -0.08 5.24 16 6 O -0.52 -8.07 16.11 -14.30 -0.23 -8.30 16 7 N -0.72 -6.49 4.71 -52.85 -0.25 -6.74 16 8 C 0.12 1.37 4.24 -66.95 -0.28 1.08 16 9 C -0.12 -1.31 7.59 -26.28 -0.20 -1.51 16 10 C -0.10 -1.38 1.11 -154.71 -0.17 -1.55 16 11 C -0.14 -2.15 7.59 -26.28 -0.20 -2.35 16 12 C 0.17 3.28 4.48 -66.94 -0.30 2.98 16 13 N -0.71 -17.85 5.40 -52.47 -0.28 -18.14 16 14 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 16 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 18 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.14 -2.42 7.64 -26.28 -0.20 -2.62 16 23 C -0.14 -1.64 7.64 -26.28 -0.20 -1.84 16 24 C -0.12 -0.80 2.86 -88.61 -0.25 -1.05 16 25 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 26 C -0.14 -0.76 6.31 -25.20 -0.16 -0.92 16 27 C 0.04 0.24 7.70 37.73 0.29 0.53 16 28 O -0.37 -3.05 11.52 -35.23 -0.41 -3.45 16 29 C 0.05 0.29 5.35 38.21 0.20 0.49 16 30 H 0.04 0.21 8.08 -51.93 -0.42 -0.21 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.40 2.49 6.08 -40.82 -0.25 2.25 16 34 H 0.11 1.54 7.47 -51.93 -0.39 1.16 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 39 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 40 H 0.38 10.23 7.92 -40.82 -0.32 9.90 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.08 0.35 7.86 -51.93 -0.41 -0.06 16 47 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.10 0.64 7.26 -51.93 -0.38 0.26 16 51 H 0.07 0.28 7.56 -51.93 -0.39 -0.11 16 LS Contribution 407.31 15.07 6.14 6.14 Total: -1.00 -34.03 407.31 -9.46 -43.49 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -8.84 Total: 8.03 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.76 Total: -7.00 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.19 Total: -52.38 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -1.16 Total: -15.69 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.03 -9.46 -43.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121482686.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.423 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds