Wall clock time and date at job start Tue Mar 31 2020 21:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 114.00170 * 2 1 4 4 H 1.09000 * 109.47018 * 29.99843 * 3 2 1 5 5 C 1.50699 * 109.47096 * 270.00502 * 3 2 1 6 6 O 1.21277 * 120.00168 * 354.99502 * 5 3 2 7 7 N 1.34779 * 119.99989 * 175.00307 * 5 3 2 8 8 C 1.46494 * 119.99858 * 179.97438 * 7 5 3 9 9 C 1.53955 * 113.57895 * 204.99687 * 8 7 5 10 10 C 1.52914 * 86.78137 * 220.66567 * 9 8 7 11 11 C 1.52910 * 121.13319 * 150.61590 * 10 9 8 12 12 C 1.53957 * 86.78122 * 100.81974 * 11 10 9 13 13 N 1.46499 * 113.57824 * 139.33249 * 12 11 10 14 14 C 1.36935 * 120.00115 * 154.99964 * 13 12 11 15 15 H 1.08000 * 119.99844 * 0.02562 * 14 13 12 16 16 C 1.38806 * 120.00336 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99903 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00055 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47300 * 89.99698 * 18 16 14 20 20 H 1.48504 * 109.47136 * 209.99469 * 18 16 14 21 21 H 1.48495 * 109.47325 * 329.99731 * 18 16 14 22 22 C 1.52909 * 121.13539 * 259.17710 * 10 9 8 23 23 C 1.52904 * 88.04475 * 24.89810 * 10 9 8 24 24 C 1.52992 * 109.46942 * 150.00129 * 3 2 1 25 25 H 1.08999 * 110.80625 * 63.63204 * 24 3 2 26 26 C 1.54812 * 110.91050 * 299.99923 * 24 3 2 27 27 C 1.54099 * 104.18881 * 220.92147 * 26 24 3 28 28 O 1.43747 * 107.29609 * 357.97207 * 27 26 24 29 29 C 1.44379 * 106.97370 * 26.50915 * 28 27 26 30 30 H 1.08999 * 109.46656 * 300.00253 * 1 2 3 31 31 H 1.08998 * 109.46920 * 59.99741 * 1 2 3 32 32 H 1.08994 * 109.47384 * 179.97438 * 1 2 3 33 33 H 0.97000 * 119.99899 * 359.97438 * 7 5 3 34 34 H 1.08997 * 112.88355 * 336.13550 * 8 7 5 35 35 H 1.09004 * 113.66140 * 106.19421 * 9 8 7 36 36 H 1.09001 * 113.74348 * 335.15174 * 9 8 7 37 37 H 1.09003 * 113.66688 * 346.35112 * 11 10 9 38 38 H 1.08997 * 113.74743 * 215.30368 * 11 10 9 39 39 H 1.09000 * 113.57875 * 270.12813 * 12 11 10 40 40 H 0.97001 * 120.00302 * 335.00467 * 13 12 11 41 41 H 0.97002 * 119.99841 * 180.02562 * 17 16 14 42 42 H 1.08993 * 113.65927 * 144.70919 * 22 10 9 43 43 H 1.08999 * 113.66533 * 13.65097 * 22 10 9 44 44 H 1.09002 * 113.66206 * 89.56808 * 23 10 9 45 45 H 1.08996 * 113.66484 * 220.63248 * 23 10 9 46 46 H 1.08996 * 110.48636 * 339.60214 * 26 24 3 47 47 H 1.09000 * 110.48511 * 102.24341 * 26 24 3 48 48 H 1.09005 * 109.87831 * 117.39558 * 27 26 24 49 49 H 1.08996 * 109.87768 * 238.54058 * 27 26 24 50 50 H 1.08998 * 110.61824 * 201.44167 * 29 28 27 51 51 H 1.09000 * 110.61742 * 78.44407 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0106 -2.3413 7 7 2.6589 3.0124 -1.6686 8 6 2.8580 3.4583 -3.0497 9 6 3.8908 4.5916 -3.1882 10 6 2.9422 5.2143 -4.2132 11 6 2.8844 6.7283 -4.4194 12 6 3.7589 6.5045 -5.6666 13 7 3.3657 7.3270 -6.8133 14 6 4.2849 7.6397 -7.7790 15 1 5.2996 7.2795 -7.6954 16 6 3.9125 8.4194 -8.8652 17 7 2.6757 8.8579 -8.9674 18 14 5.1663 8.8453 -10.1829 19 1 5.1464 7.8030 -11.2404 20 1 4.8290 10.1626 -10.7798 21 1 6.5200 8.9088 -9.5759 22 6 3.1964 5.0722 -5.7143 23 6 1.7972 4.4651 -3.5308 24 6 3.3589 1.2631 0.7212 25 1 4.0630 0.6239 0.1885 26 6 3.1873 0.7949 2.1868 27 6 4.1366 1.7066 2.9882 28 8 4.8062 2.5605 2.0454 29 6 3.9346 2.6909 0.9018 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.8470 3.6154 -0.9323 34 1 3.0213 2.6327 -3.7423 35 1 4.8414 4.2678 -3.6120 36 1 4.0111 5.1886 -2.2842 37 1 3.3813 7.2963 -3.6329 38 1 1.8862 7.1026 -4.6465 39 1 4.8288 6.5462 -5.4621 40 1 2.4542 7.6503 -6.8886 41 1 2.4154 9.4025 -9.7267 42 1 2.2854 4.9795 -6.3054 43 1 3.9425 4.3173 -5.9621 44 1 1.3279 5.0258 -2.7224 45 1 1.0754 4.0401 -4.2283 46 1 2.1571 0.9351 2.5139 47 1 3.4829 -0.2491 2.2908 48 1 3.5640 2.3098 3.6929 49 1 4.8674 1.1011 3.5241 50 1 4.5008 2.9908 0.0200 51 1 3.1359 3.4036 1.1072 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121482686.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:51 Heat of formation + Delta-G solvation = -93.072945 kcal Electronic energy + Delta-G solvation = -29831.136371 eV Core-core repulsion = 25731.449645 eV Total energy + Delta-G solvation = -4099.686726 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.91240 -41.07584 -39.86166 -38.42537 -37.16414 -35.36352 -34.33562 -33.26132 -31.49465 -30.57677 -28.38222 -26.99750 -26.71922 -26.57891 -26.03535 -24.18853 -23.23723 -22.02801 -21.62205 -21.38924 -19.45610 -18.93211 -18.50260 -17.94464 -17.60494 -17.14010 -16.90654 -16.70316 -16.20416 -16.13453 -15.83904 -15.64200 -15.56240 -15.43207 -15.09741 -14.70344 -14.42911 -14.18109 -13.70098 -13.60919 -13.48842 -13.27545 -13.04231 -12.97318 -12.82906 -12.77091 -12.44271 -12.40277 -12.30478 -12.25806 -12.20930 -12.14543 -11.88371 -11.64023 -11.60462 -11.27992 -11.05883 -10.88998 -10.75404 -10.66237 -10.32201 -10.04742 -8.97253 -7.94660 -5.22613 1.43625 1.46797 1.48524 1.56816 1.97360 2.56472 2.59714 2.95094 3.36541 3.43035 3.51223 3.51750 3.64648 3.67735 3.75936 3.86302 3.94250 3.96875 4.01161 4.15937 4.26635 4.30401 4.33669 4.35429 4.46101 4.49410 4.53085 4.62594 4.68795 4.79609 4.81572 4.82272 4.83278 4.90359 4.94454 5.01120 5.04007 5.05252 5.09968 5.12131 5.15932 5.24565 5.44459 5.54587 5.59894 5.71977 5.87212 5.93783 6.28111 6.49701 7.16467 7.33497 8.12085 8.34147 9.28766 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.001990 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.717609 B =14069.155400 C =14840.077681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.377 6.377 3 C 0.090 3.910 4 H 0.122 0.878 5 C 0.485 3.515 6 O -0.573 6.573 7 N -0.702 5.702 8 C 0.127 3.873 9 C -0.105 4.105 10 C -0.090 4.090 11 C -0.122 4.122 12 C 0.148 3.852 13 N -0.730 5.730 14 C -0.242 4.242 15 H 0.076 0.924 16 C -0.080 4.080 17 N -0.971 5.971 18 Si 0.972 3.028 19 H -0.290 1.290 20 H -0.296 1.296 21 H -0.268 1.268 22 C -0.141 4.141 23 C -0.130 4.130 24 C -0.115 4.115 25 H 0.079 0.921 26 C -0.136 4.136 27 C 0.040 3.960 28 O -0.395 6.395 29 C 0.044 3.956 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.415 0.585 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.372 0.628 41 H 0.250 0.750 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.104 0.896 45 H 0.053 0.947 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.090 0.910 50 H 0.101 0.899 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 -15.691 30.391 34.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.294 6.294 3 C 0.028 3.972 4 H 0.140 0.860 5 C 0.271 3.729 6 O -0.452 6.452 7 N -0.357 5.357 8 C 0.021 3.979 9 C -0.143 4.143 10 C -0.092 4.092 11 C -0.161 4.161 12 C 0.038 3.962 13 N -0.367 5.367 14 C -0.374 4.374 15 H 0.094 0.906 16 C -0.272 4.272 17 N -0.622 5.622 18 Si 0.802 3.198 19 H -0.217 1.217 20 H -0.222 1.222 21 H -0.192 1.192 22 C -0.182 4.182 23 C -0.168 4.168 24 C -0.135 4.135 25 H 0.098 0.902 26 C -0.174 4.174 27 C -0.037 4.037 28 O -0.314 6.314 29 C -0.032 4.032 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.254 0.746 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.204 0.796 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.123 0.877 45 H 0.072 0.928 46 H 0.113 0.887 47 H 0.100 0.900 48 H 0.095 0.905 49 H 0.108 0.892 50 H 0.119 0.881 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.861 -16.294 29.694 33.922 hybrid contribution -0.337 0.603 -1.410 1.570 sum -2.198 -15.691 28.284 32.420 Atomic orbital electron populations 1.23046 0.79196 1.04292 1.00702 1.87971 1.21613 1.25510 1.94306 1.22083 0.97005 0.87507 0.90558 0.86044 1.21978 0.76238 0.81838 0.92820 1.90718 1.51544 1.55181 1.47733 1.46119 1.66650 1.13969 1.08923 1.22351 0.97095 0.95202 0.83205 1.23070 0.96896 0.95187 0.99161 1.21907 0.98068 0.95139 0.94037 1.23092 1.00002 0.95074 0.97905 1.21946 0.97177 0.89959 0.87092 1.42631 1.10668 1.60271 1.23126 1.19711 0.93002 1.24489 1.00152 0.90566 1.25582 0.98395 1.01687 1.01501 1.69818 1.18364 1.41767 1.32234 0.85149 0.78798 0.76676 0.79219 1.21693 1.22221 1.19245 1.23409 1.00395 0.99900 0.94490 1.23273 0.96439 0.96937 1.00198 1.22706 0.94272 0.99180 0.97293 0.90242 1.22878 1.01621 1.01059 0.91792 1.23391 0.95949 0.92208 0.92113 1.88915 1.43229 1.69537 1.29709 1.23847 0.94780 0.94588 0.90004 0.90949 0.95112 0.88297 0.74627 0.89323 0.90426 0.86417 0.90092 0.91301 0.90628 0.79566 0.94099 0.92355 0.92480 0.87745 0.92779 0.88726 0.89953 0.90472 0.89169 0.88065 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.81 113.37 1.23 1.52 16 2 O -0.38 -6.74 9.58 -129.99 -1.25 -7.99 16 3 C 0.09 1.22 2.01 29.85 0.06 1.28 16 4 H 0.12 0.82 7.73 -2.39 -0.02 0.80 16 5 C 0.48 9.94 7.11 87.66 0.62 10.56 16 6 O -0.57 -18.04 16.11 15.97 0.26 -17.78 16 7 N -0.70 -10.93 4.71 -439.52 -2.07 -13.00 16 8 C 0.13 2.63 4.24 45.63 0.19 2.82 16 9 C -0.11 -1.98 7.59 30.89 0.23 -1.75 16 10 C -0.09 -2.31 1.11 -52.31 -0.06 -2.37 16 11 C -0.12 -3.67 7.59 30.89 0.23 -3.44 16 12 C 0.15 5.72 4.48 45.63 0.20 5.93 16 13 N -0.73 -37.18 5.40 -319.92 -1.73 -38.91 16 14 C -0.24 -13.55 9.97 84.03 0.84 -12.72 16 15 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 16 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 17 N -0.97 -60.19 13.06 21.65 0.28 -59.91 16 18 Si 0.97 46.66 29.55 68.60 2.03 48.68 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 20 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 C -0.14 -4.87 7.64 30.89 0.24 -4.64 16 23 C -0.13 -2.90 7.64 30.89 0.24 -2.66 16 24 C -0.12 -1.35 2.86 -9.49 -0.03 -1.37 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 C -0.14 -1.11 6.31 31.58 0.20 -0.91 16 27 C 0.04 0.34 7.70 72.35 0.56 0.90 16 28 O -0.39 -5.56 11.52 -148.98 -1.72 -7.28 16 29 C 0.04 0.42 5.35 72.67 0.39 0.81 16 30 H 0.07 0.47 8.08 -2.39 -0.02 0.46 16 31 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.41 3.56 6.08 -92.71 -0.56 3.00 16 34 H 0.09 2.39 7.47 -2.39 -0.02 2.37 16 35 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.12 1.53 8.12 -2.39 -0.02 1.51 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 39 H 0.08 2.89 8.10 -2.39 -0.02 2.87 16 40 H 0.37 20.44 7.92 -92.71 -0.73 19.71 16 41 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.09 0.48 7.86 -2.39 -0.02 0.47 16 47 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 49 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.10 0.96 7.26 -2.39 -0.02 0.95 16 51 H 0.09 0.38 7.56 -2.39 -0.02 0.36 16 Total: -1.00 -76.78 407.31 1.05 -75.73 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: -0.37 Total: 30.64 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 5.61 Total: -10.19 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -3.52 Total: -111.82 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -2.70 Total: -33.04 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -76.78 1.05 -75.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121482686.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.339 kcal (2) G-P(sol) polarization free energy of solvation -76.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds