Wall clock time and date at job start Tue Mar 31 2020 21:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00237 * 2 1 4 4 H 1.09006 * 109.46875 * 30.00107 * 3 2 1 5 5 C 1.50697 * 109.47179 * 270.00119 * 3 2 1 6 6 O 1.21274 * 120.00256 * 355.00278 * 5 3 2 7 7 N 1.34784 * 119.99610 * 174.99891 * 5 3 2 8 8 C 1.46505 * 119.99588 * 180.02562 * 7 5 3 9 9 C 1.53950 * 113.57520 * 254.24100 * 8 7 5 10 10 C 1.53066 * 86.72540 * 220.69140 * 9 8 7 11 11 C 1.52910 * 121.17531 * 150.58823 * 10 9 8 12 12 C 1.53948 * 86.78199 * 100.75416 * 11 10 9 13 13 N 1.46504 * 113.64696 * 270.11736 * 12 11 10 14 14 C 1.36937 * 119.99950 * 252.75645 * 13 12 11 15 15 H 1.07997 * 120.00369 * 359.97438 * 14 13 12 16 16 C 1.38818 * 119.99986 * 180.02562 * 14 13 12 17 17 N 1.31614 * 119.99781 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99901 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47038 * 89.99873 * 18 16 14 20 20 H 1.48498 * 109.47056 * 209.99688 * 18 16 14 21 21 H 1.48494 * 109.47247 * 329.99406 * 18 16 14 22 22 C 1.52910 * 121.06838 * 259.12618 * 10 9 8 23 23 C 1.52910 * 88.06801 * 24.83692 * 10 9 8 24 24 C 1.53000 * 109.47154 * 150.00041 * 3 2 1 25 25 H 1.08994 * 110.91148 * 182.13657 * 24 3 2 26 26 C 1.55457 * 110.92315 * 305.75410 * 24 3 2 27 27 C 1.54947 * 100.98961 * 152.22637 * 26 24 3 28 28 O 1.43650 * 105.13275 * 323.60678 * 27 26 24 29 29 C 1.43233 * 109.97542 * 24.42908 * 28 27 26 30 30 H 1.09000 * 109.46838 * 299.99809 * 1 2 3 31 31 H 1.08999 * 109.46853 * 59.99797 * 1 2 3 32 32 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 33 33 H 0.96994 * 120.00209 * 359.97438 * 7 5 3 34 34 H 1.08997 * 112.82486 * 25.32790 * 8 7 5 35 35 H 1.08996 * 113.66737 * 335.14056 * 9 8 7 36 36 H 1.09008 * 113.66164 * 106.19480 * 9 8 7 37 37 H 1.09003 * 113.66602 * 215.22743 * 11 10 9 38 38 H 1.09002 * 113.66101 * 346.27676 * 11 10 9 39 39 H 1.09002 * 113.57687 * 139.33935 * 12 11 10 40 40 H 0.96995 * 119.99735 * 72.75946 * 13 12 11 41 41 H 0.97004 * 119.99869 * 180.02562 * 17 16 14 42 42 H 1.08997 * 113.66706 * 13.62788 * 22 10 9 43 43 H 1.09003 * 113.66511 * 144.59823 * 22 10 9 44 44 H 1.08998 * 113.66346 * 220.69514 * 23 10 9 45 45 H 1.09001 * 113.66603 * 89.64162 * 23 10 9 46 46 H 1.08999 * 111.05650 * 34.31250 * 26 24 3 47 47 H 1.08993 * 111.14807 * 270.17991 * 26 24 3 48 48 H 1.08996 * 110.31348 * 204.69266 * 27 26 24 49 49 H 1.08998 * 110.39377 * 82.56129 * 27 26 24 50 50 H 1.09002 * 109.83312 * 117.80151 * 29 28 27 51 51 H 1.08996 * 109.82720 * 238.68562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2146 1.7643 -1.4208 6 8 1.9791 1.0107 -2.3413 7 7 2.6590 3.0125 -1.6684 8 6 2.8571 3.4588 -3.0497 9 6 4.3375 3.5403 -3.4641 10 6 3.9730 4.8401 -4.1857 11 6 4.9978 5.9610 -4.3633 12 6 5.1796 5.4487 -5.8036 13 7 6.2210 4.4268 -5.9368 14 6 7.4130 4.7379 -6.5347 15 1 7.5854 5.7364 -6.9084 16 6 8.3995 3.7695 -6.6613 17 7 8.1893 2.5526 -6.2062 18 14 10.0259 4.1941 -7.4762 19 1 10.9823 4.6794 -6.4492 20 1 10.5796 2.9844 -8.1359 21 1 9.8086 5.2558 -8.4914 22 6 3.7574 4.8686 -5.6993 23 6 2.7993 4.9880 -3.2169 24 6 3.3590 1.2632 0.7212 25 1 3.8064 2.2559 0.7679 26 6 3.2085 0.6571 2.1449 27 6 4.6200 0.0556 2.3606 28 8 5.0167 -0.4414 1.0725 29 6 4.3153 0.2609 0.0398 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.8469 3.6154 -0.9323 34 1 2.2339 2.9183 -3.7622 35 1 5.0194 3.6818 -2.6257 36 1 4.6488 2.7392 -4.1346 37 1 4.5671 6.9607 -4.3057 38 1 5.8858 5.8444 -3.7420 39 1 5.2725 6.2457 -6.5414 40 1 6.0660 3.5300 -5.6014 41 1 8.8788 1.8760 -6.2944 42 1 3.6546 3.8794 -6.1453 43 1 2.9770 5.5601 -6.0171 44 1 1.8834 5.3420 -3.6902 45 1 3.0480 5.5372 -2.3089 46 1 2.4438 -0.1195 2.1611 47 1 2.9948 1.4316 2.8814 48 1 4.5778 -0.7589 3.0837 49 1 5.3134 0.8255 2.6989 50 1 5.0248 0.7969 -0.5906 51 1 3.7434 -0.4439 -0.5638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121482687.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:54 Heat of formation + Delta-G solvation = -93.952090 kcal Electronic energy + Delta-G solvation = -30517.136739 eV Core-core repulsion = 26417.411891 eV Total energy + Delta-G solvation = -4099.724848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.87949 -41.12910 -39.85043 -38.35192 -37.10138 -35.25281 -34.28490 -33.25326 -31.45554 -30.71743 -28.23073 -27.12192 -26.81726 -26.55164 -25.84317 -24.26113 -23.43823 -22.29153 -21.33884 -21.20499 -19.30232 -18.86781 -18.43521 -18.25217 -17.65800 -17.17309 -16.73065 -16.68584 -16.30538 -16.00646 -15.83647 -15.67245 -15.53789 -15.31322 -15.12950 -14.46386 -14.38313 -14.13721 -13.82710 -13.77552 -13.56188 -13.52209 -13.05656 -12.99074 -12.80711 -12.76346 -12.57413 -12.46180 -12.29218 -12.18874 -12.05724 -11.89914 -11.77416 -11.75142 -11.59551 -11.23115 -11.08115 -10.82030 -10.73564 -10.53943 -10.26182 -10.01252 -8.99063 -7.95401 -5.23867 1.44966 1.47125 1.47758 1.55696 2.03643 2.54699 2.69510 2.91202 3.27518 3.36755 3.52085 3.54244 3.59637 3.69268 3.78899 3.83475 3.87580 4.02576 4.12370 4.15806 4.24618 4.28762 4.34938 4.39463 4.47474 4.49494 4.55607 4.72965 4.77810 4.80019 4.81500 4.84256 4.89308 4.90380 4.95553 4.96085 4.98326 5.09223 5.12615 5.16824 5.25271 5.35581 5.43415 5.59278 5.60115 5.71054 5.98178 6.01893 6.27676 6.55750 7.22451 7.32118 8.12577 8.33584 9.28014 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012140 B = 0.002796 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.874047 B =10013.436624 C =11434.341254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.379 6.379 3 C 0.090 3.910 4 H 0.136 0.864 5 C 0.482 3.518 6 O -0.576 6.576 7 N -0.700 5.700 8 C 0.129 3.871 9 C -0.128 4.128 10 C -0.090 4.090 11 C -0.140 4.140 12 C 0.141 3.859 13 N -0.722 5.722 14 C -0.240 4.240 15 H 0.079 0.921 16 C -0.080 4.080 17 N -0.972 5.972 18 Si 0.974 3.026 19 H -0.287 1.287 20 H -0.299 1.299 21 H -0.267 1.267 22 C -0.127 4.127 23 C -0.101 4.101 24 C -0.110 4.110 25 H 0.129 0.871 26 C -0.133 4.133 27 C 0.038 3.962 28 O -0.413 6.413 29 C 0.055 3.945 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.094 0.906 33 H 0.418 0.582 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.028 0.972 37 H 0.105 0.895 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.373 0.627 41 H 0.249 0.751 42 H 0.041 0.959 43 H 0.114 0.886 44 H 0.093 0.907 45 H 0.113 0.887 46 H 0.085 0.915 47 H 0.123 0.877 48 H 0.095 0.905 49 H 0.074 0.926 50 H 0.049 0.951 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.350 4.795 21.982 29.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.296 6.296 3 C 0.028 3.972 4 H 0.154 0.846 5 C 0.269 3.731 6 O -0.455 6.455 7 N -0.353 5.353 8 C 0.024 3.976 9 C -0.167 4.167 10 C -0.090 4.090 11 C -0.181 4.181 12 C 0.031 3.969 13 N -0.360 5.360 14 C -0.372 4.372 15 H 0.097 0.903 16 C -0.271 4.271 17 N -0.623 5.623 18 Si 0.803 3.197 19 H -0.214 1.214 20 H -0.226 1.226 21 H -0.191 1.191 22 C -0.165 4.165 23 C -0.139 4.139 24 C -0.129 4.129 25 H 0.147 0.853 26 C -0.170 4.170 27 C -0.038 4.038 28 O -0.333 6.333 29 C -0.022 4.022 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.113 0.887 33 H 0.256 0.744 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.047 0.953 37 H 0.123 0.877 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.205 0.795 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.132 0.868 44 H 0.111 0.889 45 H 0.131 0.869 46 H 0.103 0.897 47 H 0.141 0.859 48 H 0.113 0.887 49 H 0.092 0.908 50 H 0.068 0.932 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.142 4.005 21.188 28.834 hybrid contribution 1.187 -0.385 -0.715 1.438 sum -17.954 3.620 20.474 27.471 Atomic orbital electron populations 1.23032 0.79142 1.04099 1.00845 1.87997 1.21710 1.25676 1.94223 1.22005 0.97105 0.87608 0.90436 0.84642 1.22032 0.76234 0.81920 0.92940 1.90725 1.52016 1.54848 1.47863 1.45923 1.66454 1.14058 1.08861 1.22363 0.95243 0.96555 0.83418 1.23130 0.97191 0.96819 0.99512 1.22015 0.97024 0.95490 0.94493 1.23435 0.97562 0.98138 0.98939 1.21482 0.88174 0.91490 0.95715 1.42384 1.13473 1.10316 1.69873 1.19712 0.92311 0.96142 1.29026 0.90317 1.25601 1.02354 0.95771 1.03424 1.69848 1.35086 1.03478 1.53864 0.85122 0.79779 0.76644 0.78137 1.21367 1.22558 1.19137 1.23180 0.98065 1.00859 0.94406 1.23083 0.98165 0.92671 0.99931 1.22954 0.92364 1.01468 0.96100 0.85323 1.23294 0.97341 1.01973 0.94411 1.23673 0.95485 0.99712 0.84892 1.88400 1.66545 1.62123 1.16278 1.23039 0.93929 0.94495 0.90731 0.90601 0.94976 0.88730 0.74426 0.89416 0.90022 0.95278 0.87693 0.93837 0.92220 0.79513 0.94226 0.94003 0.86775 0.88852 0.86901 0.89679 0.85916 0.88656 0.90793 0.93247 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.81 113.37 1.23 1.59 16 2 O -0.38 -8.06 8.03 -129.99 -1.04 -9.10 16 3 C 0.09 1.48 2.34 29.85 0.07 1.55 16 4 H 0.14 1.01 7.79 -2.38 -0.02 0.99 16 5 C 0.48 11.83 6.50 87.65 0.57 12.40 16 6 O -0.58 -20.88 16.13 15.98 0.26 -20.62 16 7 N -0.70 -13.66 5.32 -439.52 -2.34 -16.00 16 8 C 0.13 3.27 4.21 45.62 0.19 3.46 16 9 C -0.13 -4.20 7.19 30.94 0.22 -3.97 16 10 C -0.09 -2.56 1.03 -52.26 -0.05 -2.62 16 11 C -0.14 -4.41 7.64 30.88 0.24 -4.18 16 12 C 0.14 5.55 4.55 45.63 0.21 5.76 16 13 N -0.72 -37.56 5.31 -319.92 -1.70 -39.25 16 14 C -0.24 -13.66 9.97 84.03 0.84 -12.82 16 15 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 16 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 17 N -0.97 -62.10 13.06 21.65 0.28 -61.82 16 18 Si 0.97 47.45 29.55 68.60 2.03 49.47 16 19 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 C -0.13 -4.05 7.59 30.89 0.23 -3.82 16 23 C -0.10 -1.92 7.59 30.88 0.23 -1.68 16 24 C -0.11 -1.71 2.92 -9.48 -0.03 -1.74 16 25 H 0.13 1.30 8.06 -2.39 -0.02 1.28 16 26 C -0.13 -1.50 6.56 32.11 0.21 -1.28 16 27 C 0.04 0.62 7.78 72.65 0.57 1.18 16 28 O -0.41 -11.38 11.36 -148.98 -1.69 -13.07 16 29 C 0.05 1.46 6.70 72.45 0.49 1.95 16 30 H 0.08 0.58 8.08 -2.39 -0.02 0.57 16 31 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.42 4.63 8.63 -92.71 -0.80 3.83 16 34 H 0.09 2.69 7.50 -2.39 -0.02 2.68 16 35 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.03 1.22 7.48 -2.38 -0.02 1.20 16 37 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 2.31 8.10 -2.39 -0.02 2.30 16 40 H 0.37 21.17 6.77 -92.71 -0.63 20.54 16 41 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 42 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 43 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 44 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.11 1.55 8.11 -2.39 -0.02 1.53 16 46 H 0.08 1.10 7.21 -2.39 -0.02 1.08 16 47 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.05 1.68 7.16 -2.39 -0.02 1.67 16 Total: -1.00 -83.20 407.69 0.97 -82.23 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -0.50 Total: 36.63 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 5.68 Total: -8.47 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -3.75 Total: -117.07 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -2.48 Total: -42.80 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.47 kcal Total: -83.20 0.97 -82.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121482687.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.719 kcal (2) G-P(sol) polarization free energy of solvation -83.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds