Wall clock time and date at job start Tue Mar 31 2020 21:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99869 * 2 1 4 4 H 1.09005 * 109.47431 * 31.58727 * 3 2 1 5 5 C 1.50704 * 109.47120 * 151.58516 * 3 2 1 6 6 O 1.21280 * 119.99662 * 17.98449 * 5 3 2 7 7 N 1.34775 * 120.00195 * 197.97373 * 5 3 2 8 8 C 1.46498 * 120.00260 * 174.92869 * 7 5 3 9 9 C 1.53949 * 113.65215 * 105.82417 * 8 7 5 10 10 C 1.52909 * 86.77903 * 89.88181 * 9 8 7 11 11 C 1.52913 * 121.13486 * 150.62050 * 10 9 8 12 12 C 1.53951 * 86.78302 * 150.61436 * 11 10 9 13 13 N 1.46497 * 113.65517 * 220.65226 * 12 11 10 14 14 C 1.36941 * 119.99863 * 252.76030 * 13 12 11 15 15 H 1.08003 * 119.99998 * 359.97438 * 14 13 12 16 16 C 1.38815 * 119.99956 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00203 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99861 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47307 * 89.99611 * 18 16 14 20 20 H 1.48497 * 109.47187 * 210.00246 * 18 16 14 21 21 H 1.48504 * 109.47168 * 329.99782 * 18 16 14 22 22 C 1.52909 * 121.13543 * 259.17714 * 10 9 8 23 23 C 1.52903 * 88.04441 * 24.90209 * 10 9 8 24 24 C 1.52995 * 109.47337 * 271.58695 * 3 2 1 25 25 H 1.09001 * 110.45500 * 51.48017 * 24 3 2 26 26 C 1.54511 * 110.51711 * 174.08557 * 24 3 2 27 27 C 1.54471 * 104.06495 * 118.64252 * 26 24 3 28 28 O 1.44427 * 104.80195 * 23.98253 * 27 26 24 29 29 C 1.44423 * 105.27592 * 319.48654 * 28 27 26 30 30 H 1.09001 * 109.47016 * 184.42957 * 1 2 3 31 31 H 1.09000 * 109.46915 * 304.42651 * 1 2 3 32 32 H 1.08990 * 109.47433 * 64.42610 * 1 2 3 33 33 H 0.97005 * 120.00114 * 354.93121 * 7 5 3 34 34 H 1.09007 * 112.81881 * 334.67179 * 8 7 5 35 35 H 1.08996 * 113.66407 * 204.35305 * 9 8 7 36 36 H 1.09002 * 113.66108 * 335.41102 * 9 8 7 37 37 H 1.08996 * 113.66468 * 265.09177 * 11 10 9 38 38 H 1.09000 * 113.66224 * 36.15133 * 11 10 9 39 39 H 1.08999 * 113.57463 * 89.86839 * 12 11 10 40 40 H 0.96998 * 119.99785 * 72.75758 * 13 12 11 41 41 H 0.96991 * 119.99904 * 179.97438 * 17 16 14 42 42 H 1.08994 * 113.66501 * 323.85715 * 22 10 9 43 43 H 1.09005 * 113.65824 * 94.82310 * 22 10 9 44 44 H 1.09002 * 113.66396 * 220.62613 * 23 10 9 45 45 H 1.09001 * 113.66606 * 89.57094 * 23 10 9 46 46 H 1.08995 * 110.51390 * 237.29753 * 26 24 3 47 47 H 1.09008 * 110.50462 * 359.97438 * 26 24 3 48 48 H 1.09000 * 110.37376 * 142.81080 * 27 26 24 49 49 H 1.08999 * 110.37681 * 265.15455 * 27 26 24 50 50 H 1.09000 * 110.37453 * 281.67783 * 29 28 27 51 51 H 1.08997 * 110.37055 * 159.33963 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3582 1.9935 0.5383 5 6 3.3562 1.2561 0.6761 6 8 3.9232 0.1939 0.8214 7 7 3.9298 2.3923 1.1191 8 6 5.1839 2.3337 1.8741 9 6 6.4128 2.7894 1.0665 10 6 6.1232 4.1986 1.5847 11 6 7.2485 5.2145 1.7843 12 6 6.2007 6.3031 1.4892 13 7 6.7045 7.3909 0.6471 14 6 6.9524 8.6216 1.1941 15 1 6.7762 8.7904 2.2462 16 6 7.4303 9.6522 0.3963 17 7 7.6681 10.8352 0.9218 18 14 7.7358 9.3600 -1.4233 19 1 6.5023 9.6726 -2.1888 20 1 8.8414 10.2364 -1.8866 21 1 8.1065 7.9386 -1.6410 22 6 5.4156 5.2332 0.7088 23 6 5.4159 3.5574 2.7790 24 6 2.1811 1.7876 -1.4419 25 1 1.2448 1.6871 -1.9907 26 6 2.6696 3.2533 -1.4684 27 6 4.0366 3.1805 -2.1841 28 8 3.9726 1.9773 -2.9804 29 6 3.3108 1.0028 -2.1448 30 1 -0.3633 -1.0246 0.0794 31 1 -0.3633 0.5810 0.8477 32 1 -0.3634 0.4436 -0.9269 33 1 3.5123 3.2490 0.9382 34 1 5.3262 1.3809 2.3841 35 1 7.3532 2.3746 1.4294 36 1 6.2906 2.6861 -0.0117 37 1 7.6354 5.2442 2.8028 38 1 8.0351 5.1493 1.0326 39 1 5.6826 6.6620 2.3784 40 1 6.8624 7.2393 -0.2979 41 1 8.0023 11.5552 0.3644 42 1 5.6871 5.1732 -0.3451 43 1 4.3380 5.2768 0.8672 44 1 4.4972 4.0675 3.0690 45 1 6.0760 3.3583 3.6233 46 1 1.9759 3.8769 -2.0323 47 1 2.7888 3.6345 -0.4542 48 1 4.1768 4.0518 -2.8238 49 1 4.8435 3.1103 -1.4547 50 1 4.0065 0.5986 -1.4094 51 1 2.8936 0.2012 -2.7543 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121482689.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:02 Heat of formation + Delta-G solvation = -57.280547 kcal Electronic energy + Delta-G solvation = -31454.793924 eV Core-core repulsion = 27356.659272 eV Total energy + Delta-G solvation = -4098.134651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.35736 -40.20645 -38.73781 -37.81067 -35.99621 -33.98935 -33.15682 -32.02780 -30.24339 -29.93029 -27.84352 -26.16692 -25.91205 -25.37608 -24.26993 -23.31412 -22.53069 -21.40300 -20.55573 -20.03408 -18.25831 -17.83583 -17.44634 -17.24681 -16.73965 -16.38495 -15.99437 -15.40451 -15.25607 -15.18557 -14.95017 -14.85235 -14.49977 -14.09922 -13.97008 -13.76937 -13.31773 -13.04258 -13.02569 -12.67753 -12.51392 -12.36422 -12.20301 -11.91052 -11.88453 -11.72666 -11.45214 -11.40642 -11.28494 -11.18775 -11.03332 -10.85885 -10.39879 -10.29200 -10.10266 -10.06033 -9.94817 -9.75786 -9.68827 -9.49041 -9.17175 -8.93134 -7.30716 -5.82250 -3.17848 2.26176 2.49479 3.33413 3.36138 3.42005 3.44586 3.68224 4.07641 4.20680 4.35222 4.45041 4.48612 4.50069 4.54153 4.55808 4.62170 4.75235 4.80723 4.87194 4.94871 4.99098 5.09781 5.13607 5.24823 5.28030 5.34883 5.50861 5.52961 5.56424 5.58628 5.59508 5.64164 5.68658 5.70963 5.74451 5.83054 5.89315 5.99253 6.03458 6.09747 6.20786 6.38432 6.50215 6.52545 6.56112 6.73189 6.93920 7.22597 7.92889 7.94192 8.37600 9.15371 9.88060 10.07680 11.36040 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.003083 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.625456 B = 9080.893521 C = 9982.749677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.080 3.920 4 H 0.088 0.912 5 C 0.520 3.480 6 O -0.515 6.515 7 N -0.707 5.707 8 C 0.121 3.879 9 C -0.136 4.136 10 C -0.107 4.107 11 C -0.151 4.151 12 C 0.176 3.824 13 N -0.737 5.737 14 C -0.248 4.248 15 H 0.090 0.910 16 C 0.005 3.995 17 N -0.933 5.933 18 Si 0.884 3.116 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.132 4.132 23 C -0.119 4.119 24 C -0.140 4.140 25 H 0.099 0.901 26 C -0.153 4.153 27 C 0.041 3.959 28 O -0.373 6.373 29 C 0.048 3.952 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.400 0.600 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.096 0.904 49 H 0.067 0.933 50 H 0.073 0.927 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.763 -20.931 -1.401 25.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.273 6.273 3 C 0.018 3.982 4 H 0.106 0.894 5 C 0.304 3.696 6 O -0.390 6.390 7 N -0.362 5.362 8 C 0.016 3.984 9 C -0.175 4.175 10 C -0.107 4.107 11 C -0.192 4.192 12 C 0.065 3.935 13 N -0.377 5.377 14 C -0.378 4.378 15 H 0.108 0.892 16 C -0.191 4.191 17 N -0.580 5.580 18 Si 0.714 3.286 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.171 4.171 23 C -0.157 4.157 24 C -0.160 4.160 25 H 0.117 0.883 26 C -0.191 4.191 27 C -0.036 4.036 28 O -0.291 6.291 29 C -0.029 4.029 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.238 0.762 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.116 0.884 46 H 0.106 0.894 47 H 0.094 0.906 48 H 0.114 0.886 49 H 0.085 0.915 50 H 0.091 0.909 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.152 -21.666 -1.343 25.913 hybrid contribution -0.241 0.665 -1.191 1.385 sum -14.393 -21.001 -2.534 25.586 Atomic orbital electron populations 1.22936 0.80371 1.03440 1.00282 1.88057 1.19821 1.24618 1.94822 1.22072 0.93791 0.87025 0.95333 0.89449 1.20188 0.86648 0.84319 0.78397 1.90732 1.63793 1.29455 1.54970 1.45960 1.25164 1.08671 1.56437 1.21926 0.83468 0.99643 0.93359 1.23250 0.97827 0.96127 1.00285 1.22339 0.99141 0.92658 0.96587 1.23612 0.97388 0.96864 1.01319 1.21503 0.92573 0.85675 0.93786 1.42761 1.78302 1.09221 1.07418 1.19128 1.36927 0.85873 0.95829 0.89172 1.24694 1.01233 0.95596 0.97566 1.69697 1.51239 1.01992 1.35110 0.86567 0.77859 0.77296 0.86898 1.21064 1.21708 1.20290 1.23261 0.98511 0.96302 0.99064 1.23034 1.00855 0.95117 0.96669 1.23012 1.01833 0.95716 0.95391 0.88290 1.23100 0.98623 0.95483 1.01904 1.23512 0.96117 0.88868 0.95069 1.89145 1.79808 1.21919 1.38241 1.23548 0.92815 0.92010 0.94529 0.88927 0.93625 0.93653 0.76177 0.88270 0.89133 0.91302 0.92151 0.90416 0.89976 0.80515 0.93012 0.90240 0.92411 0.90797 0.88384 0.89402 0.90587 0.88556 0.91531 0.90898 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.85 101.05 1.10 1.25 16 2 O -0.36 -3.56 9.88 -54.47 -0.54 -4.09 16 3 C 0.08 0.70 2.26 -27.88 -0.06 0.63 16 4 H 0.09 0.55 7.74 -51.93 -0.40 0.14 16 5 C 0.52 5.84 5.44 -10.98 -0.06 5.78 16 6 O -0.52 -7.83 15.34 -13.68 -0.21 -8.04 16 7 N -0.71 -6.72 4.90 -52.85 -0.26 -6.98 16 8 C 0.12 1.25 4.26 -66.95 -0.29 0.96 16 9 C -0.14 -1.53 7.64 -26.28 -0.20 -1.73 16 10 C -0.11 -1.26 1.03 -154.71 -0.16 -1.42 16 11 C -0.15 -2.31 7.64 -26.28 -0.20 -2.51 16 12 C 0.18 3.06 4.48 -66.95 -0.30 2.76 16 13 N -0.74 -16.52 5.21 -52.47 -0.27 -16.79 16 14 C -0.25 -6.75 10.45 -15.06 -0.16 -6.91 16 15 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 16 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 17 N -0.93 -28.80 13.97 55.49 0.78 -28.02 16 18 Si 0.88 21.61 27.73 -169.99 -4.71 16.90 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 22 C -0.13 -1.74 7.16 -26.28 -0.19 -1.93 16 23 C -0.12 -1.17 7.58 -26.29 -0.20 -1.37 16 24 C -0.14 -1.16 3.14 -89.05 -0.28 -1.44 16 25 H 0.10 0.68 7.74 -51.93 -0.40 0.28 16 26 C -0.15 -1.19 6.23 -25.17 -0.16 -1.35 16 27 C 0.04 0.42 7.63 37.93 0.29 0.71 16 28 O -0.37 -4.63 11.65 -35.23 -0.41 -5.04 16 29 C 0.05 0.52 6.93 37.93 0.26 0.78 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.22 7.98 -51.93 -0.41 -0.20 16 32 H 0.04 0.21 7.74 -51.93 -0.40 -0.19 16 33 H 0.40 3.19 5.01 -40.82 -0.20 2.98 16 34 H 0.10 1.11 7.57 -51.93 -0.39 0.72 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.83 6.96 -51.93 -0.36 0.46 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 40 H 0.36 8.01 5.78 -40.82 -0.24 7.77 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 43 H 0.06 0.65 7.47 -51.93 -0.39 0.26 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.08 0.51 4.91 -51.92 -0.26 0.26 16 48 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.07 0.72 6.96 -51.93 -0.36 0.36 16 50 H 0.07 0.94 5.63 -51.93 -0.29 0.65 16 51 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -33.85 395.02 -8.72 -42.58 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -8.35 Total: 9.26 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -0.70 Total: -5.71 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.24 Total: -51.80 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.16 Total: -17.17 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.85 -8.72 -42.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121482689.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.702 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds