Wall clock time and date at job start Tue Mar 31 2020 21:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99869 * 2 1 4 4 H 1.09005 * 109.47431 * 31.58727 * 3 2 1 5 5 C 1.50704 * 109.47120 * 151.58516 * 3 2 1 6 6 O 1.21280 * 119.99662 * 17.98449 * 5 3 2 7 7 N 1.34775 * 120.00195 * 197.97373 * 5 3 2 8 8 C 1.46498 * 120.00260 * 174.92869 * 7 5 3 9 9 C 1.53949 * 113.65215 * 105.82417 * 8 7 5 10 10 C 1.52909 * 86.77903 * 89.88181 * 9 8 7 11 11 C 1.52913 * 121.13486 * 150.62050 * 10 9 8 12 12 C 1.53951 * 86.78302 * 150.61436 * 11 10 9 13 13 N 1.46497 * 113.65517 * 220.65226 * 12 11 10 14 14 C 1.36941 * 119.99863 * 252.76030 * 13 12 11 15 15 H 1.08003 * 119.99998 * 359.97438 * 14 13 12 16 16 C 1.38815 * 119.99956 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00203 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99861 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47307 * 89.99611 * 18 16 14 20 20 H 1.48497 * 109.47187 * 210.00246 * 18 16 14 21 21 H 1.48504 * 109.47168 * 329.99782 * 18 16 14 22 22 C 1.52909 * 121.13543 * 259.17714 * 10 9 8 23 23 C 1.52903 * 88.04441 * 24.90209 * 10 9 8 24 24 C 1.52995 * 109.47337 * 271.58695 * 3 2 1 25 25 H 1.09001 * 110.45500 * 51.48017 * 24 3 2 26 26 C 1.54511 * 110.51711 * 174.08557 * 24 3 2 27 27 C 1.54471 * 104.06495 * 118.64252 * 26 24 3 28 28 O 1.44427 * 104.80195 * 23.98253 * 27 26 24 29 29 C 1.44423 * 105.27592 * 319.48654 * 28 27 26 30 30 H 1.09001 * 109.47016 * 184.42957 * 1 2 3 31 31 H 1.09000 * 109.46915 * 304.42651 * 1 2 3 32 32 H 1.08990 * 109.47433 * 64.42610 * 1 2 3 33 33 H 0.97005 * 120.00114 * 354.93121 * 7 5 3 34 34 H 1.09007 * 112.81881 * 334.67179 * 8 7 5 35 35 H 1.08996 * 113.66407 * 204.35305 * 9 8 7 36 36 H 1.09002 * 113.66108 * 335.41102 * 9 8 7 37 37 H 1.08996 * 113.66468 * 265.09177 * 11 10 9 38 38 H 1.09000 * 113.66224 * 36.15133 * 11 10 9 39 39 H 1.08999 * 113.57463 * 89.86839 * 12 11 10 40 40 H 0.96998 * 119.99785 * 72.75758 * 13 12 11 41 41 H 0.96991 * 119.99904 * 179.97438 * 17 16 14 42 42 H 1.08994 * 113.66501 * 323.85715 * 22 10 9 43 43 H 1.09005 * 113.65824 * 94.82310 * 22 10 9 44 44 H 1.09002 * 113.66396 * 220.62613 * 23 10 9 45 45 H 1.09001 * 113.66606 * 89.57094 * 23 10 9 46 46 H 1.08995 * 110.51390 * 237.29753 * 26 24 3 47 47 H 1.09008 * 110.50462 * 359.97438 * 26 24 3 48 48 H 1.09000 * 110.37376 * 142.81080 * 27 26 24 49 49 H 1.08999 * 110.37681 * 265.15455 * 27 26 24 50 50 H 1.09000 * 110.37453 * 281.67783 * 29 28 27 51 51 H 1.08997 * 110.37055 * 159.33963 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3582 1.9935 0.5383 5 6 3.3562 1.2561 0.6761 6 8 3.9232 0.1939 0.8214 7 7 3.9298 2.3923 1.1191 8 6 5.1839 2.3337 1.8741 9 6 6.4128 2.7894 1.0665 10 6 6.1232 4.1986 1.5847 11 6 7.2485 5.2145 1.7843 12 6 6.2007 6.3031 1.4892 13 7 6.7045 7.3909 0.6471 14 6 6.9524 8.6216 1.1941 15 1 6.7762 8.7904 2.2462 16 6 7.4303 9.6522 0.3963 17 7 7.6681 10.8352 0.9218 18 14 7.7358 9.3600 -1.4233 19 1 6.5023 9.6726 -2.1888 20 1 8.8414 10.2364 -1.8866 21 1 8.1065 7.9386 -1.6410 22 6 5.4156 5.2332 0.7088 23 6 5.4159 3.5574 2.7790 24 6 2.1811 1.7876 -1.4419 25 1 1.2448 1.6871 -1.9907 26 6 2.6696 3.2533 -1.4684 27 6 4.0366 3.1805 -2.1841 28 8 3.9726 1.9773 -2.9804 29 6 3.3108 1.0028 -2.1448 30 1 -0.3633 -1.0246 0.0794 31 1 -0.3633 0.5810 0.8477 32 1 -0.3634 0.4436 -0.9269 33 1 3.5123 3.2490 0.9382 34 1 5.3262 1.3809 2.3841 35 1 7.3532 2.3746 1.4294 36 1 6.2906 2.6861 -0.0117 37 1 7.6354 5.2442 2.8028 38 1 8.0351 5.1493 1.0326 39 1 5.6826 6.6620 2.3784 40 1 6.8624 7.2393 -0.2979 41 1 8.0023 11.5552 0.3644 42 1 5.6871 5.1732 -0.3451 43 1 4.3380 5.2768 0.8672 44 1 4.4972 4.0675 3.0690 45 1 6.0760 3.3583 3.6233 46 1 1.9759 3.8769 -2.0323 47 1 2.7888 3.6345 -0.4542 48 1 4.1768 4.0518 -2.8238 49 1 4.8435 3.1103 -1.4547 50 1 4.0065 0.5986 -1.4094 51 1 2.8936 0.2012 -2.7543 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121482689.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:01 Heat of formation + Delta-G solvation = -81.042572 kcal Electronic energy + Delta-G solvation = -31455.824322 eV Core-core repulsion = 27356.659272 eV Total energy + Delta-G solvation = -4099.165050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.21316 -41.14021 -39.60890 -38.52253 -37.25915 -35.25893 -34.37592 -33.21901 -31.96735 -30.63297 -28.46223 -26.91397 -26.75886 -26.47690 -25.91262 -24.20543 -23.60523 -22.39461 -21.31825 -21.29971 -19.76583 -18.87138 -18.56842 -18.00382 -17.47227 -17.15069 -16.91122 -16.75459 -16.27339 -16.11497 -15.87979 -15.74876 -15.57680 -15.31784 -14.90555 -14.74652 -14.51744 -14.39363 -13.98103 -13.81736 -13.48859 -13.41552 -13.10637 -12.97910 -12.93097 -12.88845 -12.49565 -12.46100 -12.39028 -12.20688 -12.04321 -11.93946 -11.83345 -11.79981 -11.27286 -11.21936 -11.06001 -10.85583 -10.77776 -10.65306 -10.49053 -10.05990 -9.23447 -8.00765 -5.32690 1.38718 1.41537 1.44743 1.48803 1.77923 2.49590 2.81232 2.96583 3.29796 3.40372 3.45737 3.52263 3.56951 3.64244 3.73097 3.78201 3.81274 3.87509 3.94793 4.11779 4.19060 4.25240 4.33952 4.36233 4.51674 4.57419 4.58818 4.63203 4.65391 4.76259 4.78666 4.83449 4.86999 4.88214 4.90250 4.95940 4.99226 5.00955 5.02374 5.11675 5.13649 5.25087 5.44929 5.58431 5.69641 5.74241 5.81471 5.99691 6.25359 6.47729 7.10748 7.13855 7.89308 8.06858 9.21016 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.003083 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.625456 B = 9080.893521 C = 9982.749677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.386 6.386 3 C 0.082 3.918 4 H 0.121 0.879 5 C 0.517 3.483 6 O -0.562 6.562 7 N -0.696 5.696 8 C 0.125 3.875 9 C -0.135 4.135 10 C -0.092 4.092 11 C -0.150 4.150 12 C 0.152 3.848 13 N -0.743 5.743 14 C -0.228 4.228 15 H 0.058 0.942 16 C -0.067 4.067 17 N -0.986 5.986 18 Si 0.953 3.047 19 H -0.275 1.275 20 H -0.301 1.301 21 H -0.254 1.254 22 C -0.117 4.117 23 C -0.108 4.108 24 C -0.130 4.130 25 H 0.120 0.880 26 C -0.147 4.147 27 C 0.032 3.968 28 O -0.396 6.396 29 C 0.044 3.956 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.410 0.590 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.365 0.635 41 H 0.256 0.744 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.089 0.911 48 H 0.101 0.899 49 H 0.056 0.944 50 H 0.047 0.953 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.018 -22.179 -2.137 28.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.305 6.305 3 C 0.021 3.979 4 H 0.138 0.862 5 C 0.303 3.697 6 O -0.439 6.439 7 N -0.351 5.351 8 C 0.020 3.980 9 C -0.173 4.173 10 C -0.093 4.093 11 C -0.191 4.191 12 C 0.044 3.956 13 N -0.384 5.384 14 C -0.359 4.359 15 H 0.076 0.924 16 C -0.258 4.258 17 N -0.637 5.637 18 Si 0.781 3.219 19 H -0.201 1.201 20 H -0.228 1.228 21 H -0.179 1.179 22 C -0.155 4.155 23 C -0.146 4.146 24 C -0.149 4.149 25 H 0.138 0.862 26 C -0.184 4.184 27 C -0.044 4.044 28 O -0.315 6.315 29 C -0.033 4.033 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.250 0.750 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.198 0.802 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.107 0.893 48 H 0.119 0.881 49 H 0.075 0.925 50 H 0.066 0.934 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.447 -22.963 -2.067 28.321 hybrid contribution 0.474 0.978 -0.859 1.386 sum -15.972 -21.985 -2.926 27.331 Atomic orbital electron populations 1.23153 0.78440 1.04348 1.01731 1.88031 1.22012 1.25439 1.94988 1.22136 0.92732 0.87510 0.95511 0.86167 1.20745 0.87404 0.83795 0.77721 1.90711 1.65136 1.31187 1.56898 1.45883 1.24680 1.08856 1.55710 1.21817 0.83452 0.99521 0.93216 1.23253 0.98636 0.95477 0.99976 1.22213 0.97352 0.92149 0.97574 1.23484 0.97502 0.97230 1.00838 1.21890 0.94350 0.85353 0.94033 1.42779 1.78847 1.08702 1.08036 1.19114 1.34642 0.87702 0.94463 0.92408 1.25495 1.02325 0.95411 1.02534 1.69881 1.53675 1.03227 1.36895 0.85441 0.77508 0.78057 0.80942 1.20138 1.22789 1.17872 1.23114 0.99804 0.93895 0.98713 1.23041 1.01344 0.94113 0.96074 1.22980 1.01556 0.95394 0.94991 0.86210 1.23112 0.97358 0.95387 1.02588 1.23648 0.97444 0.88268 0.95070 1.89120 1.80282 1.22930 1.39191 1.23544 0.93223 0.92379 0.94124 0.88480 0.92225 0.92055 0.75000 0.89049 0.88811 0.92066 0.92269 0.91768 0.90678 0.80172 0.93483 0.90163 0.89599 0.89333 0.87375 0.87489 0.89292 0.88118 0.92549 0.93441 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.85 113.37 1.23 1.40 16 2 O -0.39 -6.94 9.88 -130.59 -1.29 -8.23 16 3 C 0.08 1.21 2.26 29.85 0.07 1.28 16 4 H 0.12 0.96 7.74 -2.38 -0.02 0.94 16 5 C 0.52 10.71 5.44 87.66 0.48 11.19 16 6 O -0.56 -16.88 15.34 15.36 0.24 -16.65 16 7 N -0.70 -11.41 4.90 -439.52 -2.15 -13.57 16 8 C 0.13 2.31 4.26 45.63 0.19 2.51 16 9 C -0.13 -2.78 7.64 30.88 0.24 -2.54 16 10 C -0.09 -1.97 1.03 -52.31 -0.05 -2.02 16 11 C -0.15 -4.39 7.64 30.89 0.24 -4.15 16 12 C 0.15 5.09 4.48 45.63 0.20 5.30 16 13 N -0.74 -32.58 5.21 -319.92 -1.67 -34.24 16 14 C -0.23 -12.57 10.45 84.03 0.88 -11.69 16 15 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 16 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 17 N -0.99 -62.55 13.97 21.65 0.30 -62.24 16 18 Si 0.95 44.67 27.73 68.60 1.90 46.57 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 21 H -0.25 -10.78 6.52 99.48 0.65 -10.13 16 22 C -0.12 -2.73 7.16 30.89 0.22 -2.51 16 23 C -0.11 -1.81 7.58 30.88 0.23 -1.58 16 24 C -0.13 -1.77 3.14 -9.78 -0.03 -1.80 16 25 H 0.12 1.18 7.74 -2.39 -0.02 1.16 16 26 C -0.15 -1.75 6.23 31.61 0.20 -1.55 16 27 C 0.03 0.59 7.63 72.48 0.55 1.14 16 28 O -0.40 -9.45 11.65 -148.98 -1.74 -11.18 16 29 C 0.04 0.92 6.93 72.48 0.50 1.42 16 30 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.37 7.98 -2.39 -0.02 0.35 16 32 H 0.06 0.36 7.74 -2.39 -0.02 0.34 16 33 H 0.41 4.96 5.01 -92.70 -0.46 4.49 16 34 H 0.09 1.92 7.57 -2.38 -0.02 1.90 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 1.38 6.96 -2.39 -0.02 1.37 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.08 2.61 8.10 -2.39 -0.02 2.59 16 40 H 0.36 15.46 5.78 -92.71 -0.54 14.92 16 41 H 0.26 15.55 8.31 -92.72 -0.77 14.78 16 42 H 0.08 1.93 8.12 -2.39 -0.02 1.91 16 43 H 0.09 1.55 7.47 -2.38 -0.02 1.53 16 44 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.09 0.80 4.91 -2.38 -0.01 0.79 16 48 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.06 1.13 6.96 -2.39 -0.02 1.11 16 50 H 0.05 1.24 5.63 -2.39 -0.01 1.22 16 51 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -76.68 395.02 1.09 -75.58 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -0.12 Total: 30.96 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 5.61 Total: -6.99 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -3.52 Total: -110.05 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -2.79 Total: -36.06 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.57 kcal Total: -76.68 1.09 -75.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121482689.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.458 kcal (2) G-P(sol) polarization free energy of solvation -76.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds