Wall clock time and date at job start Tue Mar 31 2020 22:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00337 * 2 1 4 4 O 1.20828 * 119.99551 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00541 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46469 * 300.00162 * 5 3 2 7 7 C 1.52995 * 109.46985 * 59.99873 * 5 3 2 8 8 C 1.52999 * 109.47267 * 180.02562 * 7 5 3 9 9 C 1.52998 * 109.47160 * 300.00262 * 8 7 5 10 10 C 1.52999 * 109.47017 * 59.99469 * 9 8 7 11 11 C 1.52994 * 109.47247 * 180.02562 * 5 3 2 12 12 H 1.08994 * 109.47270 * 59.99859 * 11 5 3 13 13 C 1.50703 * 109.46934 * 299.99620 * 11 5 3 14 14 O 1.21277 * 120.00229 * 349.93200 * 13 11 5 15 15 N 1.34783 * 119.99629 * 169.92941 * 13 11 5 16 16 C 1.47080 * 120.88255 * 354.34129 * 15 13 11 17 17 C 1.53693 * 108.27201 * 128.75439 * 16 15 13 18 18 N 1.46896 * 109.26006 * 54.08682 * 17 16 15 19 19 C 1.46902 * 111.00301 * 172.60635 * 18 17 16 20 20 C 1.50703 * 109.46682 * 294.29920 * 19 18 17 21 21 H 1.07997 * 120.00227 * 359.97438 * 20 19 18 22 22 C 1.37887 * 119.99706 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99825 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99785 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46797 * 90.00074 * 24 22 20 26 26 H 1.48501 * 109.47074 * 209.99717 * 24 22 20 27 27 H 1.48502 * 109.47054 * 330.00167 * 24 22 20 28 28 C 1.46902 * 111.26727 * 296.74881 * 18 17 16 29 29 C 1.47084 * 120.87779 * 174.61812 * 15 13 11 30 30 H 1.09004 * 109.47305 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46824 * 299.99403 * 1 2 3 32 32 H 1.08992 * 109.47376 * 59.99573 * 1 2 3 33 33 H 1.09004 * 109.47004 * 60.00315 * 7 5 3 34 34 H 1.09007 * 109.47579 * 300.00475 * 7 5 3 35 35 H 1.08994 * 109.47383 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.47125 * 60.00054 * 8 7 5 37 37 H 1.09004 * 109.46931 * 299.99911 * 9 8 7 38 38 H 1.08999 * 109.47246 * 180.02562 * 9 8 7 39 39 H 1.09007 * 109.47352 * 180.02562 * 10 9 8 40 40 H 1.08998 * 109.47280 * 60.00701 * 10 9 8 41 41 H 1.09002 * 109.62541 * 248.52170 * 16 15 13 42 42 H 1.08994 * 109.62797 * 9.09889 * 16 15 13 43 43 H 1.09003 * 109.65336 * 294.07730 * 17 16 15 44 44 H 1.09003 * 109.44071 * 173.96003 * 17 16 15 45 45 H 1.08998 * 109.47059 * 54.29811 * 19 18 17 46 46 H 1.08996 * 109.47392 * 174.29779 * 19 18 17 47 47 H 0.96996 * 120.00074 * 180.02562 * 23 22 20 48 48 H 1.08996 * 109.49446 * 303.15032 * 28 18 17 49 49 H 1.08995 * 109.49564 * 183.06370 * 28 18 17 50 50 H 1.08994 * 109.62828 * 350.90210 * 29 15 13 51 51 H 1.09000 * 109.62346 * 111.47879 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9564 0.7805 0.8892 7 6 4.1129 0.5815 -1.2501 8 6 5.6408 0.6611 -1.2505 9 6 6.0752 2.1281 -1.2500 10 6 5.5285 2.8214 -0.0004 11 6 4.0001 2.7420 0.0002 12 1 3.6108 3.2355 0.8906 13 6 3.4608 3.4259 -1.2297 14 8 2.9545 2.7701 -2.1154 15 7 3.5412 4.7663 -1.3453 16 6 4.0375 5.5915 -0.2335 17 6 5.1400 6.5158 -0.7742 18 7 4.6200 7.2699 -1.9226 19 6 5.5811 8.2908 -2.3609 20 6 5.7371 9.3303 -1.2810 21 1 5.1779 9.2417 -0.3613 22 6 6.5930 10.3952 -1.4676 23 7 7.2736 10.5033 -2.5877 24 14 6.7858 11.6841 -0.1293 25 1 7.8822 11.2840 0.7889 26 1 7.1111 12.9945 -0.7474 27 1 5.5173 11.7981 0.6345 28 6 4.2621 6.3740 -3.0304 29 6 3.1293 5.4432 -2.5844 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 3.7228 1.0759 -2.1399 34 1 3.8038 -0.4638 -1.2503 35 1 6.0302 0.1676 -2.1409 36 1 6.0306 0.1665 -0.3607 37 1 5.6854 2.6227 -2.1398 38 1 7.1637 2.1848 -1.2507 39 1 5.8376 3.8667 -0.0003 40 1 5.9183 2.3269 0.8893 41 1 3.2209 6.1888 0.1721 42 1 4.4465 4.9484 0.5457 43 1 5.9968 5.9197 -1.0882 44 1 5.4471 7.2103 0.0079 45 1 6.5456 7.8219 -2.5559 46 1 5.2170 8.7653 -3.2721 47 1 7.8759 11.2521 -2.7188 48 1 5.1310 5.7798 -3.3129 49 1 3.9320 6.9653 -3.8843 50 1 2.9376 4.7020 -3.3602 51 1 2.2271 6.0265 -2.4004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144801755.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:36 Heat of formation + Delta-G solvation = -117.312294 kcal Electronic energy + Delta-G solvation = -31776.293982 eV Core-core repulsion = 27675.556159 eV Total energy + Delta-G solvation = -4100.737823 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.42214 -39.90462 -38.13070 -36.78055 -36.44235 -34.45557 -32.53662 -31.64726 -31.54258 -30.34772 -28.21781 -27.87360 -25.69973 -24.31832 -23.31422 -23.17511 -22.03560 -21.06587 -21.00919 -19.90393 -18.30255 -17.67567 -17.02300 -16.81676 -16.38878 -16.32917 -15.44362 -15.38432 -15.06127 -14.71655 -14.43185 -14.14464 -14.05867 -13.86749 -13.72494 -13.54889 -13.33387 -13.03114 -12.84317 -12.73564 -12.34032 -12.20216 -12.12488 -12.06299 -11.80825 -11.36079 -11.26895 -11.04966 -11.00063 -10.92690 -10.88224 -10.79444 -10.73177 -10.57461 -10.50915 -10.35592 -10.21251 -9.87920 -9.28419 -9.23422 -8.50159 -8.34605 -7.31970 -6.07500 -4.09494 2.18733 2.58907 2.84880 3.17540 3.28149 3.35159 3.39062 4.23615 4.37420 4.39323 4.48748 4.77030 4.83254 4.89616 4.92335 4.93805 4.98488 5.03986 5.15298 5.18359 5.25866 5.28188 5.34496 5.35420 5.42638 5.46805 5.58987 5.65012 5.66905 5.73260 5.82619 5.88173 5.92395 5.97638 6.04377 6.07822 6.13911 6.29434 6.31030 6.37906 6.46556 6.48202 6.77732 7.21780 7.26759 7.64891 7.70183 7.74389 8.01189 8.11839 8.39570 8.46886 8.97857 9.55106 11.03297 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.002808 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.731134 B = 9967.759806 C =10298.105729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.471 3.529 4 O -0.498 6.498 5 C -0.055 4.055 6 H 0.110 0.890 7 C -0.132 4.132 8 C -0.113 4.113 9 C -0.125 4.125 10 C -0.114 4.114 11 C -0.097 4.097 12 H 0.101 0.899 13 C 0.538 3.462 14 O -0.547 6.547 15 N -0.604 5.604 16 C 0.106 3.894 17 C 0.051 3.949 18 N -0.535 5.535 19 C 0.194 3.806 20 C -0.509 4.509 21 H 0.064 0.936 22 C 0.056 3.944 23 N -0.898 5.898 24 Si 0.898 3.102 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.272 1.272 28 C 0.042 3.958 29 C 0.121 3.879 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.025 0.975 44 H 0.096 0.904 45 H -0.009 1.009 46 H 0.031 0.969 47 H 0.262 0.738 48 H 0.025 0.975 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.296 -22.293 6.315 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.313 3.687 4 O -0.384 6.384 5 C -0.075 4.075 6 H 0.128 0.872 7 C -0.169 4.169 8 C -0.151 4.151 9 C -0.162 4.162 10 C -0.152 4.152 11 C -0.118 4.118 12 H 0.119 0.881 13 C 0.326 3.674 14 O -0.426 6.426 15 N -0.336 5.336 16 C -0.017 4.017 17 C -0.078 4.078 18 N -0.260 5.260 19 C 0.069 3.931 20 C -0.548 4.548 21 H 0.082 0.918 22 C -0.146 4.146 23 N -0.537 5.537 24 Si 0.725 3.275 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.197 1.197 28 C -0.087 4.087 29 C -0.002 4.002 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.128 0.872 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.044 0.956 44 H 0.114 0.886 45 H 0.009 0.991 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.044 0.956 49 H 0.098 0.902 50 H 0.104 0.896 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.098 -21.954 5.892 23.814 hybrid contribution 0.680 0.608 0.490 1.035 sum -6.418 -21.346 6.382 23.186 Atomic orbital electron populations 1.23217 0.76623 1.03341 1.02548 1.86467 1.23193 1.33661 1.84446 1.23594 0.91853 0.81307 0.71961 1.90675 1.66986 1.36225 1.44518 1.20834 0.87304 0.96815 1.02530 0.87223 1.21965 0.95835 1.00641 0.98435 1.21500 0.95096 0.96467 1.02001 1.21585 1.00748 0.95799 0.98092 1.21666 0.91434 1.02618 0.99471 1.21248 0.97688 0.94143 0.98712 0.88125 1.20073 0.77814 0.81780 0.87703 1.90496 1.45540 1.63623 1.42911 1.48087 1.63977 1.05480 1.16096 1.22182 0.97978 0.93200 0.88385 1.22416 0.93736 0.95426 0.96216 1.62061 1.45515 1.13011 1.05447 1.19718 0.88017 0.88543 0.96778 1.21141 1.24067 1.07207 1.02375 0.91807 1.24995 0.95707 0.98078 0.95792 1.69954 1.27667 1.31256 1.24820 0.86504 0.78427 0.80853 0.81680 1.20733 1.21258 1.19725 1.22403 0.96522 0.94526 0.95250 1.21705 0.97500 0.94903 0.86094 0.88328 0.92115 0.91887 0.87203 0.91239 0.91490 0.91982 0.91649 0.91307 0.89981 0.90406 0.90669 0.90066 0.95640 0.88585 0.99143 0.95073 0.92872 0.95634 0.90186 0.89631 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.14 10.47 -39.25 -0.41 -4.55 16 3 C 0.47 6.17 6.38 36.01 0.23 6.40 16 4 O -0.50 -8.06 14.19 -24.87 -0.35 -8.41 16 5 C -0.06 -0.59 2.38 -91.78 -0.22 -0.81 16 6 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 7 C -0.13 -1.39 4.87 -26.73 -0.13 -1.52 16 8 C -0.11 -1.01 5.92 -26.73 -0.16 -1.17 16 9 C -0.12 -1.28 5.70 -26.73 -0.15 -1.43 16 10 C -0.11 -1.12 5.10 -26.71 -0.14 -1.25 16 11 C -0.10 -1.12 1.33 -91.75 -0.12 -1.24 16 12 H 0.10 1.11 7.16 -51.93 -0.37 0.74 16 13 C 0.54 8.12 4.28 -10.98 -0.05 8.07 16 14 O -0.55 -9.48 11.61 -12.13 -0.14 -9.62 16 15 N -0.60 -9.42 3.00 -172.18 -0.52 -9.94 16 16 C 0.11 1.54 5.76 -3.37 -0.02 1.52 16 17 C 0.05 0.91 5.40 -3.47 -0.02 0.90 16 18 N -0.54 -11.07 4.62 -235.47 -1.09 -12.16 16 19 C 0.19 4.90 4.72 -4.97 -0.02 4.88 16 20 C -0.51 -13.78 8.41 -34.44 -0.29 -14.07 16 21 H 0.06 1.69 7.13 -52.49 -0.37 1.32 16 22 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 23 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 24 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 28 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 29 C 0.12 1.97 6.58 -3.60 -0.02 1.94 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 32 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 33 H 0.11 1.51 5.17 -51.93 -0.27 1.24 16 34 H 0.07 0.66 8.11 -51.92 -0.42 0.24 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.84 7.22 -51.93 -0.37 0.47 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.87 5.84 -51.92 -0.30 0.57 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.08 0.95 4.61 -51.93 -0.24 0.71 16 43 H 0.03 0.46 7.89 -51.93 -0.41 0.05 16 44 H 0.10 1.82 6.67 -51.93 -0.35 1.47 16 45 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 46 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 50 H 0.09 1.38 7.10 -51.93 -0.37 1.02 16 51 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 385.34 15.07 5.81 5.81 Total: -1.00 -32.74 385.34 -9.66 -42.40 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -8.51 Total: 0.07 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -0.16 Total: 5.79 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.87 Total: -47.54 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.90 Total: -22.58 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.74 -9.66 -42.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144801755.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.916 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds