Wall clock time and date at job start Tue Mar 31 2020 22:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00337 * 2 1 4 4 O 1.20828 * 119.99551 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00541 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46469 * 300.00162 * 5 3 2 7 7 C 1.52995 * 109.46985 * 59.99873 * 5 3 2 8 8 C 1.52999 * 109.47267 * 180.02562 * 7 5 3 9 9 C 1.52998 * 109.47160 * 300.00262 * 8 7 5 10 10 C 1.52999 * 109.47017 * 59.99469 * 9 8 7 11 11 C 1.52994 * 109.47247 * 180.02562 * 5 3 2 12 12 H 1.08994 * 109.47270 * 59.99859 * 11 5 3 13 13 C 1.50703 * 109.46934 * 299.99620 * 11 5 3 14 14 O 1.21277 * 120.00229 * 349.93200 * 13 11 5 15 15 N 1.34783 * 119.99629 * 169.92941 * 13 11 5 16 16 C 1.47080 * 120.88255 * 354.34129 * 15 13 11 17 17 C 1.53693 * 108.27201 * 128.75439 * 16 15 13 18 18 N 1.46896 * 109.26006 * 54.08682 * 17 16 15 19 19 C 1.46902 * 111.00301 * 172.60635 * 18 17 16 20 20 C 1.50703 * 109.46682 * 294.29920 * 19 18 17 21 21 H 1.07997 * 120.00227 * 359.97438 * 20 19 18 22 22 C 1.37887 * 119.99706 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99825 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99785 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46797 * 90.00074 * 24 22 20 26 26 H 1.48501 * 109.47074 * 209.99717 * 24 22 20 27 27 H 1.48502 * 109.47054 * 330.00167 * 24 22 20 28 28 C 1.46902 * 111.26727 * 296.74881 * 18 17 16 29 29 C 1.47084 * 120.87779 * 174.61812 * 15 13 11 30 30 H 1.09004 * 109.47305 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46824 * 299.99403 * 1 2 3 32 32 H 1.08992 * 109.47376 * 59.99573 * 1 2 3 33 33 H 1.09004 * 109.47004 * 60.00315 * 7 5 3 34 34 H 1.09007 * 109.47579 * 300.00475 * 7 5 3 35 35 H 1.08994 * 109.47383 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.47125 * 60.00054 * 8 7 5 37 37 H 1.09004 * 109.46931 * 299.99911 * 9 8 7 38 38 H 1.08999 * 109.47246 * 180.02562 * 9 8 7 39 39 H 1.09007 * 109.47352 * 180.02562 * 10 9 8 40 40 H 1.08998 * 109.47280 * 60.00701 * 10 9 8 41 41 H 1.09002 * 109.62541 * 248.52170 * 16 15 13 42 42 H 1.08994 * 109.62797 * 9.09889 * 16 15 13 43 43 H 1.09003 * 109.65336 * 294.07730 * 17 16 15 44 44 H 1.09003 * 109.44071 * 173.96003 * 17 16 15 45 45 H 1.08998 * 109.47059 * 54.29811 * 19 18 17 46 46 H 1.08996 * 109.47392 * 174.29779 * 19 18 17 47 47 H 0.96996 * 120.00074 * 180.02562 * 23 22 20 48 48 H 1.08996 * 109.49446 * 303.15032 * 28 18 17 49 49 H 1.08995 * 109.49564 * 183.06370 * 28 18 17 50 50 H 1.08994 * 109.62828 * 350.90210 * 29 15 13 51 51 H 1.09000 * 109.62346 * 111.47879 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9564 0.7805 0.8892 7 6 4.1129 0.5815 -1.2501 8 6 5.6408 0.6611 -1.2505 9 6 6.0752 2.1281 -1.2500 10 6 5.5285 2.8214 -0.0004 11 6 4.0001 2.7420 0.0002 12 1 3.6108 3.2355 0.8906 13 6 3.4608 3.4259 -1.2297 14 8 2.9545 2.7701 -2.1154 15 7 3.5412 4.7663 -1.3453 16 6 4.0375 5.5915 -0.2335 17 6 5.1400 6.5158 -0.7742 18 7 4.6200 7.2699 -1.9226 19 6 5.5811 8.2908 -2.3609 20 6 5.7371 9.3303 -1.2810 21 1 5.1779 9.2417 -0.3613 22 6 6.5930 10.3952 -1.4676 23 7 7.2736 10.5033 -2.5877 24 14 6.7858 11.6841 -0.1293 25 1 7.8822 11.2840 0.7889 26 1 7.1111 12.9945 -0.7474 27 1 5.5173 11.7981 0.6345 28 6 4.2621 6.3740 -3.0304 29 6 3.1293 5.4432 -2.5844 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 3.7228 1.0759 -2.1399 34 1 3.8038 -0.4638 -1.2503 35 1 6.0302 0.1676 -2.1409 36 1 6.0306 0.1665 -0.3607 37 1 5.6854 2.6227 -2.1398 38 1 7.1637 2.1848 -1.2507 39 1 5.8376 3.8667 -0.0003 40 1 5.9183 2.3269 0.8893 41 1 3.2209 6.1888 0.1721 42 1 4.4465 4.9484 0.5457 43 1 5.9968 5.9197 -1.0882 44 1 5.4471 7.2103 0.0079 45 1 6.5456 7.8219 -2.5559 46 1 5.2170 8.7653 -3.2721 47 1 7.8759 11.2521 -2.7188 48 1 5.1310 5.7798 -3.3129 49 1 3.9320 6.9653 -3.8843 50 1 2.9376 4.7020 -3.3602 51 1 2.2271 6.0265 -2.4004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144801755.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:35 Heat of formation + Delta-G solvation = -137.649849 kcal Electronic energy + Delta-G solvation = -31777.175885 eV Core-core repulsion = 27675.556159 eV Total energy + Delta-G solvation = -4101.619725 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.42597 -40.98370 -39.41079 -37.92292 -37.41307 -36.01358 -34.45217 -32.76721 -32.43268 -31.52168 -29.93434 -28.64964 -27.37107 -25.37413 -24.58927 -24.31260 -23.54494 -22.38134 -21.85978 -21.09165 -19.53845 -18.59913 -18.48349 -18.06251 -17.80894 -17.29806 -16.68294 -16.57961 -16.47195 -16.03552 -15.99937 -15.36963 -15.29498 -15.06743 -14.84308 -14.69448 -14.36814 -14.19624 -14.05217 -13.80943 -13.65533 -13.46209 -13.10278 -13.03562 -12.98801 -12.90372 -12.72077 -12.58652 -12.41789 -12.31805 -12.13942 -12.04264 -11.81745 -11.80568 -11.74799 -11.59486 -11.27984 -11.13527 -11.10075 -10.61354 -10.35550 -9.70218 -9.04526 -8.19743 -6.30066 1.22715 1.43427 1.45144 1.56509 1.70617 1.77728 1.98398 2.41562 3.12644 3.22065 3.36253 3.42639 3.67883 3.88746 3.98641 4.04739 4.05635 4.14680 4.21152 4.23257 4.25099 4.30393 4.30621 4.38768 4.42387 4.43144 4.49197 4.54611 4.67453 4.69170 4.77247 4.80833 4.91137 4.93565 4.99125 5.05960 5.15841 5.18956 5.20665 5.22982 5.28930 5.35928 5.42641 5.46333 5.61294 5.64573 6.02708 6.25144 6.48639 6.56610 6.76086 6.85883 7.22160 7.39983 8.91598 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.002808 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.731134 B = 9967.759806 C =10298.105729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.467 3.533 4 O -0.537 6.537 5 C -0.055 4.055 6 H 0.151 0.849 7 C -0.127 4.127 8 C -0.106 4.106 9 C -0.126 4.126 10 C -0.110 4.110 11 C -0.094 4.094 12 H 0.112 0.888 13 C 0.531 3.469 14 O -0.572 6.572 15 N -0.612 5.612 16 C 0.117 3.883 17 C 0.054 3.946 18 N -0.542 5.542 19 C 0.210 3.790 20 C -0.521 4.521 21 H 0.069 0.931 22 C 0.001 3.999 23 N -0.936 5.936 24 Si 0.970 3.030 25 H -0.270 1.270 26 H -0.286 1.286 27 H -0.263 1.263 28 C 0.049 3.951 29 C 0.130 3.870 30 H 0.134 0.866 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.028 0.972 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.117 0.883 43 H 0.023 0.977 44 H 0.086 0.914 45 H -0.038 1.038 46 H 0.002 0.998 47 H 0.264 0.736 48 H 0.018 0.982 49 H 0.077 0.923 50 H 0.084 0.916 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.968 -24.046 9.326 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.278 6.278 3 C 0.311 3.689 4 O -0.426 6.426 5 C -0.074 4.074 6 H 0.169 0.831 7 C -0.165 4.165 8 C -0.144 4.144 9 C -0.164 4.164 10 C -0.147 4.147 11 C -0.115 4.115 12 H 0.130 0.870 13 C 0.322 3.678 14 O -0.453 6.453 15 N -0.345 5.345 16 C -0.006 4.006 17 C -0.075 4.075 18 N -0.266 5.266 19 C 0.084 3.916 20 C -0.559 4.559 21 H 0.087 0.913 22 C -0.197 4.197 23 N -0.577 5.577 24 Si 0.795 3.205 25 H -0.195 1.195 26 H -0.212 1.212 27 H -0.188 1.188 28 C -0.081 4.081 29 C 0.007 3.993 30 H 0.152 0.848 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.047 0.953 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.093 0.907 42 H 0.135 0.865 43 H 0.041 0.959 44 H 0.105 0.895 45 H -0.021 1.021 46 H 0.020 0.980 47 H 0.073 0.927 48 H 0.036 0.964 49 H 0.096 0.904 50 H 0.103 0.897 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.780 -23.752 8.917 26.261 hybrid contribution 0.516 1.060 -0.543 1.297 sum -6.265 -22.693 8.374 24.987 Atomic orbital electron populations 1.23462 0.75388 1.05485 1.01935 1.86462 1.24479 1.32894 1.83935 1.24155 0.92879 0.81108 0.70762 1.90657 1.68006 1.37460 1.46496 1.21005 0.85763 0.96434 1.04151 0.83115 1.21858 0.96990 1.00771 0.96845 1.21481 0.93680 0.95619 1.03573 1.21590 1.01288 0.96585 0.96901 1.21708 0.89843 1.02496 1.00688 1.21344 0.98830 0.94534 0.96812 0.87001 1.20830 0.77056 0.81256 0.88650 1.90504 1.46514 1.64014 1.44249 1.48205 1.64294 1.06102 1.15863 1.22151 0.96783 0.93060 0.88566 1.22430 0.94982 0.95414 0.94686 1.61984 1.44079 1.13696 1.06889 1.19353 0.87380 0.89373 0.95460 1.21446 1.24040 1.07665 1.02749 0.91320 1.25929 0.95253 1.00368 0.98120 1.70092 1.28449 1.32148 1.26968 0.85369 0.78873 0.77623 0.78679 1.19542 1.21212 1.18753 1.22374 0.96861 0.94232 0.94599 1.21490 0.96452 0.94433 0.86966 0.84833 0.91869 0.93408 0.90914 0.90063 0.91382 0.88909 0.95329 0.90236 0.90953 0.86575 0.90726 0.86465 0.95901 0.89533 1.02075 0.98006 0.92737 0.96373 0.90444 0.89723 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.36 -7.65 10.47 -51.37 -0.54 -8.19 16 3 C 0.47 11.52 6.38 71.24 0.45 11.98 16 4 O -0.54 -17.08 14.19 27.80 0.39 -16.68 16 5 C -0.05 -1.01 2.38 -11.54 -0.03 -1.04 16 6 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 7 C -0.13 -2.45 4.87 30.59 0.15 -2.30 16 8 C -0.11 -1.59 5.92 30.59 0.18 -1.41 16 9 C -0.13 -2.35 5.70 30.59 0.17 -2.17 16 10 C -0.11 -1.80 5.10 30.61 0.16 -1.64 16 11 C -0.09 -1.95 1.33 -11.53 -0.02 -1.96 16 12 H 0.11 2.10 7.16 -2.39 -0.02 2.08 16 13 C 0.53 15.80 4.28 87.66 0.38 16.18 16 14 O -0.57 -20.21 11.61 13.89 0.16 -20.05 16 15 N -0.61 -18.99 3.00 -817.04 -2.45 -21.44 16 16 C 0.12 3.29 5.76 86.50 0.50 3.78 16 17 C 0.05 1.92 5.40 86.54 0.47 2.38 16 18 N -0.54 -23.07 4.62 -898.89 -4.15 -27.22 16 19 C 0.21 11.08 4.72 85.56 0.40 11.49 16 20 C -0.52 -28.62 8.41 25.60 0.22 -28.40 16 21 H 0.07 3.64 7.13 -2.91 -0.02 3.61 16 22 C 0.00 0.07 5.46 84.66 0.46 0.53 16 23 N -0.94 -55.77 13.29 21.45 0.28 -55.49 16 24 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 27 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 28 C 0.05 1.82 5.62 86.38 0.49 2.31 16 29 C 0.13 4.35 6.58 86.35 0.57 4.92 16 30 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.01 8.13 -2.38 -0.02 0.99 16 32 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 33 H 0.07 2.00 5.17 -2.39 -0.01 1.99 16 34 H 0.08 1.35 8.11 -2.38 -0.02 1.33 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.03 0.73 7.22 -2.39 -0.02 0.72 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 1.35 5.84 -2.38 -0.01 1.33 16 40 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.12 2.45 4.61 -2.39 -0.01 2.44 16 43 H 0.02 0.83 7.89 -2.39 -0.02 0.81 16 44 H 0.09 3.26 6.67 -2.39 -0.02 3.24 16 45 H -0.04 -2.21 8.12 -2.39 -0.02 -2.23 16 46 H 0.00 0.10 7.97 -2.39 -0.02 0.09 16 47 H 0.26 14.81 8.31 -92.71 -0.77 14.03 16 48 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.08 2.90 7.99 -2.39 -0.02 2.88 16 50 H 0.08 2.85 7.10 -2.39 -0.02 2.84 16 51 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -74.05 385.34 2.38 -71.66 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.92 Total: 15.91 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 5.75 Total: 16.34 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -6.32 Total: -104.15 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: 0.02 Total: -44.92 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -74.05 2.38 -71.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144801755.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.987 kcal (2) G-P(sol) polarization free energy of solvation -74.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds