Wall clock time and date at job start Tue Mar 31 2020 22:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34237 * 116.99918 * 2 1 4 4 O 1.20822 * 119.99601 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00121 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.67349 * 61.78139 * 5 3 2 7 7 C 1.54896 * 110.75359 * 298.54829 * 5 3 2 8 8 C 1.54268 * 104.19256 * 203.55715 * 7 5 3 9 9 C 1.53875 * 106.59913 * 23.61300 * 8 7 5 10 10 H 1.09002 * 110.03082 * 240.66790 * 9 8 7 11 11 C 1.50699 * 110.03433 * 119.28255 * 9 8 7 12 12 O 1.21283 * 119.99805 * 241.45451 * 11 9 8 13 13 N 1.34770 * 119.99862 * 61.45657 * 11 9 8 14 14 C 1.46503 * 120.00240 * 180.02562 * 13 11 9 15 15 C 1.52991 * 109.47423 * 179.97438 * 14 13 11 16 16 C 1.53039 * 109.45984 * 184.99718 * 15 14 13 17 17 C 1.53194 * 109.31339 * 178.61579 * 16 15 14 18 18 N 1.46929 * 108.77338 * 54.63818 * 17 16 15 19 19 C 1.36938 * 120.63009 * 126.37152 * 18 17 16 20 20 H 1.07996 * 120.00094 * 332.58562 * 19 18 17 21 21 C 1.38813 * 119.99821 * 152.58705 * 19 18 17 22 22 N 1.31611 * 120.00201 * 342.49359 * 21 19 18 23 23 Si 1.86804 * 119.99923 * 162.76680 * 21 19 18 24 24 H 1.48497 * 109.46990 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47259 * 119.99842 * 23 21 19 26 26 H 1.48499 * 109.47133 * 240.00312 * 23 21 19 27 27 C 1.46929 * 118.73866 * 306.64350 * 18 17 16 28 28 C 1.52760 * 109.00960 * 53.30862 * 27 18 17 29 29 C 1.54272 * 106.59986 * 359.97438 * 9 8 7 30 30 H 1.08996 * 109.47536 * 299.99521 * 1 2 3 31 31 H 1.09001 * 109.46773 * 60.00092 * 1 2 3 32 32 H 1.09007 * 109.46363 * 179.97438 * 1 2 3 33 33 H 1.08998 * 110.48735 * 84.88297 * 7 5 3 34 34 H 1.08994 * 110.60053 * 322.29328 * 7 5 3 35 35 H 1.08997 * 110.03482 * 264.32776 * 8 7 5 36 36 H 1.08997 * 110.03040 * 142.89197 * 8 7 5 37 37 H 0.97003 * 120.00207 * 359.97438 * 13 11 9 38 38 H 1.09001 * 109.47092 * 59.99499 * 14 13 11 39 39 H 1.09004 * 109.46930 * 299.99927 * 14 13 11 40 40 H 1.08992 * 109.46671 * 304.97541 * 15 14 13 41 41 H 1.09000 * 109.49989 * 58.66695 * 16 15 14 42 42 H 1.09006 * 109.50021 * 298.56570 * 16 15 14 43 43 H 1.08997 * 109.58900 * 294.85354 * 17 16 15 44 44 H 1.08994 * 109.58760 * 174.41981 * 17 16 15 45 45 H 0.97008 * 119.99943 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.58872 * 173.15048 * 27 18 17 47 47 H 1.09003 * 109.58399 * 293.56745 * 27 18 17 48 48 H 1.08994 * 109.56594 * 185.55179 * 28 27 18 49 49 H 1.09001 * 109.38476 * 65.51623 * 28 27 18 50 50 H 1.08997 * 110.48417 * 95.06523 * 29 9 8 51 51 H 1.08994 * 110.48794 * 217.71538 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9762 0.8134 -0.8978 7 6 4.1502 0.6127 1.2733 8 6 5.5334 1.2743 1.4433 9 6 5.4652 2.6288 0.7164 10 1 6.2038 2.6602 -0.0847 11 6 5.7133 3.7510 1.6911 12 8 4.8546 4.5847 1.8873 13 7 6.8893 3.8281 2.3448 14 6 7.1304 4.9186 3.2929 15 6 8.5304 4.7732 3.8923 16 6 8.7356 5.8377 4.9725 17 6 10.1253 5.6673 5.5944 18 7 11.1296 5.6942 4.5222 19 6 12.1875 6.5618 4.5789 20 1 12.0932 7.4940 5.1159 21 6 13.3811 6.2431 3.9459 22 7 13.6275 4.9991 3.5938 23 14 14.6410 7.5785 3.6009 24 1 14.1295 8.8814 4.0967 25 1 15.9130 7.2497 4.2929 26 1 14.8815 7.6660 2.1381 27 6 10.9739 4.7767 3.3853 28 6 9.5778 4.9532 2.7909 29 6 4.0431 2.7428 0.1293 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0278 -0.0005 33 1 4.2567 -0.4624 1.1293 34 1 3.5192 0.8202 2.1375 35 1 6.3045 0.6482 0.9946 36 1 5.7459 1.4287 2.5012 37 1 7.5760 3.1610 2.1882 38 1 6.3881 4.8777 4.0901 39 1 7.0542 5.8744 2.7743 40 1 8.6352 3.7825 4.3343 41 1 7.9750 5.7237 5.7449 42 1 8.6558 6.8291 4.5263 43 1 10.1763 4.7133 6.1190 44 1 10.3152 6.4817 6.2933 45 1 14.4615 4.7765 3.1511 46 1 11.7236 5.0035 2.6273 47 1 11.0956 3.7485 3.7262 48 1 9.4165 4.2095 2.0106 49 1 9.4896 5.9526 2.3649 50 1 3.3937 3.2961 0.8076 51 1 4.0716 3.2222 -0.8491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146580906.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:11 Heat of formation + Delta-G solvation = -125.150101 kcal Electronic energy + Delta-G solvation = -29531.848370 eV Core-core repulsion = 25430.770674 eV Total energy + Delta-G solvation = -4101.077696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.08212 -40.05727 -38.13048 -37.35217 -36.57369 -34.95457 -32.94345 -31.07680 -30.25802 -29.86999 -29.19768 -27.96868 -26.70276 -24.20047 -23.09829 -22.33747 -21.90477 -21.01362 -20.44342 -19.79047 -19.08884 -18.18676 -17.33164 -16.92588 -16.79895 -16.50853 -16.00200 -15.82385 -14.92412 -14.82569 -14.39513 -14.10813 -14.00470 -13.68371 -13.55226 -13.49953 -13.38256 -13.08126 -12.67831 -12.55848 -12.38071 -12.31191 -12.01856 -11.87964 -11.59348 -11.56298 -11.40967 -11.23057 -11.17537 -11.05881 -11.00548 -10.73830 -10.67352 -10.52391 -10.24531 -10.22267 -9.93760 -9.79532 -9.55270 -9.44203 -8.96506 -8.48507 -6.68925 -5.80592 -3.21942 1.86194 2.31805 2.62871 3.21293 3.35955 3.44268 3.46555 3.96391 4.02758 4.37291 4.48828 4.68595 4.72502 4.76163 4.80964 4.86483 4.98760 5.01729 5.11064 5.13839 5.14632 5.24245 5.26554 5.34946 5.41636 5.47068 5.55955 5.58513 5.74725 5.82406 5.87037 5.91758 6.00027 6.06139 6.08339 6.14123 6.27937 6.42807 6.53135 6.56480 6.66752 6.75113 6.80912 6.97275 7.34555 7.40304 7.53953 7.62587 7.78817 8.23697 8.43593 9.20319 9.84043 10.40273 11.28010 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.029584 B = 0.001838 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.232728 B =15233.473537 C =15484.311862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.467 3.533 4 O -0.500 6.500 5 C -0.089 4.089 6 H 0.117 0.883 7 C -0.109 4.109 8 C -0.117 4.117 9 C -0.116 4.116 10 H 0.105 0.895 11 C 0.515 3.485 12 O -0.541 6.541 13 N -0.723 5.723 14 C 0.123 3.877 15 C -0.090 4.090 16 C -0.125 4.125 17 C 0.146 3.854 18 N -0.592 5.592 19 C -0.250 4.250 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.170 3.830 28 C -0.134 4.134 29 C -0.094 4.094 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.402 0.598 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.017 0.983 44 H 0.054 0.946 45 H 0.252 0.748 46 H 0.087 0.913 47 H 0.016 0.984 48 H 0.046 0.954 49 H 0.056 0.944 50 H 0.100 0.900 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.083 -13.213 -7.524 25.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.310 3.690 4 O -0.387 6.387 5 C -0.108 4.108 6 H 0.135 0.865 7 C -0.147 4.147 8 C -0.155 4.155 9 C -0.137 4.137 10 H 0.123 0.877 11 C 0.301 3.699 12 O -0.419 6.419 13 N -0.374 5.374 14 C 0.000 4.000 15 C -0.109 4.109 16 C -0.165 4.165 17 C 0.020 3.980 18 N -0.315 5.315 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.044 3.956 28 C -0.174 4.174 29 C -0.132 4.132 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.236 0.764 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.035 0.965 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.034 0.966 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.119 0.881 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.763 -12.346 -7.422 26.098 hybrid contribution 0.851 0.345 -0.375 0.992 sum -20.912 -12.001 -7.797 25.340 Atomic orbital electron populations 1.23278 0.76365 1.03690 1.02637 1.86513 1.23410 1.33538 1.84154 1.23664 0.91873 0.81302 0.72203 1.90701 1.67054 1.36352 1.44595 1.22079 0.86881 0.99765 1.02067 0.86488 1.22320 0.96181 1.00341 0.95815 1.22174 0.97617 0.94194 1.01503 1.21962 0.99597 0.94150 0.97988 0.87651 1.20450 0.81878 0.86314 0.81248 1.90702 1.44381 1.41653 1.65119 1.46079 1.16872 1.30374 1.44100 1.21557 0.97272 0.89686 0.91491 1.21303 0.92417 1.00034 0.97152 1.21989 0.99135 0.98314 0.97048 1.20885 0.87764 0.98420 0.90970 1.44048 1.25399 1.43638 1.18443 1.19241 0.89811 0.97105 1.31843 0.91662 1.25012 0.96692 0.95760 1.02260 1.70045 1.24583 1.15805 1.44372 0.86249 0.81312 0.81606 0.77776 1.20258 1.21748 1.21594 1.20680 0.91975 0.92068 0.90838 1.22181 0.98248 1.00656 0.96293 1.22245 0.94592 0.93391 1.02970 0.91843 0.91899 0.88060 0.89764 0.90884 0.89913 0.90471 0.76357 0.92038 0.91673 0.91340 0.92960 0.92072 0.96509 0.92748 0.93748 0.89507 0.96589 0.93568 0.92554 0.88121 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.04 10.55 -39.28 -0.41 -3.46 16 3 C 0.47 4.62 7.26 36.01 0.26 4.89 16 4 O -0.50 -6.61 15.55 -18.75 -0.29 -6.91 16 5 C -0.09 -0.67 3.39 -89.79 -0.30 -0.98 16 6 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 7 C -0.11 -0.72 6.25 -25.07 -0.16 -0.88 16 8 C -0.12 -0.78 6.36 -25.61 -0.16 -0.94 16 9 C -0.12 -1.00 3.30 -90.65 -0.30 -1.30 16 10 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 11 C 0.52 6.49 6.93 -10.99 -0.08 6.41 16 12 O -0.54 -9.12 15.42 5.56 0.09 -9.03 16 13 N -0.72 -8.55 5.11 -60.30 -0.31 -8.85 16 14 C 0.12 1.71 5.06 -4.04 -0.02 1.68 16 15 C -0.09 -1.37 2.19 -90.58 -0.20 -1.57 16 16 C -0.13 -2.07 5.36 -26.61 -0.14 -2.21 16 17 C 0.15 2.96 6.52 -3.71 -0.02 2.94 16 18 N -0.59 -14.46 3.00 -172.58 -0.52 -14.97 16 19 C -0.25 -6.79 9.59 -15.06 -0.14 -6.93 16 20 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 21 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 22 N -0.90 -25.77 11.20 55.49 0.62 -25.15 16 23 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.17 3.87 5.28 -3.93 -0.02 3.85 16 28 C -0.13 -2.36 5.23 -26.83 -0.14 -2.50 16 29 C -0.09 -0.92 5.18 -25.08 -0.13 -1.05 16 30 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.56 8.05 -51.93 -0.42 0.15 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.57 7.59 -51.93 -0.39 0.18 16 37 H 0.40 3.96 7.61 -40.82 -0.31 3.65 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 45 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.09 2.24 6.04 -51.93 -0.31 1.93 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.05 0.70 7.15 -51.93 -0.37 0.32 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.10 1.33 6.30 -51.93 -0.33 1.00 16 51 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 402.22 15.07 6.06 6.06 Total: -1.00 -33.65 402.22 -9.23 -42.88 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -8.86 Total: 0.33 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -0.58 Total: 2.63 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.20 Total: -48.98 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.62 Total: -19.39 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.65 -9.23 -42.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146580906.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.269 kcal (2) G-P(sol) polarization free energy of solvation -33.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds