Wall clock time and date at job start Tue Mar 31 2020 22:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34237 * 116.99918 * 2 1 4 4 O 1.20822 * 119.99601 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00121 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.67349 * 61.78139 * 5 3 2 7 7 C 1.54896 * 110.75359 * 298.54829 * 5 3 2 8 8 C 1.54268 * 104.19256 * 203.55715 * 7 5 3 9 9 C 1.53875 * 106.59913 * 23.61300 * 8 7 5 10 10 H 1.09002 * 110.03082 * 240.66790 * 9 8 7 11 11 C 1.50699 * 110.03433 * 119.28255 * 9 8 7 12 12 O 1.21283 * 119.99805 * 241.45451 * 11 9 8 13 13 N 1.34770 * 119.99862 * 61.45657 * 11 9 8 14 14 C 1.46503 * 120.00240 * 180.02562 * 13 11 9 15 15 C 1.52991 * 109.47423 * 179.97438 * 14 13 11 16 16 C 1.53039 * 109.45984 * 184.99718 * 15 14 13 17 17 C 1.53194 * 109.31339 * 178.61579 * 16 15 14 18 18 N 1.46929 * 108.77338 * 54.63818 * 17 16 15 19 19 C 1.36938 * 120.63009 * 126.37152 * 18 17 16 20 20 H 1.07996 * 120.00094 * 332.58562 * 19 18 17 21 21 C 1.38813 * 119.99821 * 152.58705 * 19 18 17 22 22 N 1.31611 * 120.00201 * 342.49359 * 21 19 18 23 23 Si 1.86804 * 119.99923 * 162.76680 * 21 19 18 24 24 H 1.48497 * 109.46990 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47259 * 119.99842 * 23 21 19 26 26 H 1.48499 * 109.47133 * 240.00312 * 23 21 19 27 27 C 1.46929 * 118.73866 * 306.64350 * 18 17 16 28 28 C 1.52760 * 109.00960 * 53.30862 * 27 18 17 29 29 C 1.54272 * 106.59986 * 359.97438 * 9 8 7 30 30 H 1.08996 * 109.47536 * 299.99521 * 1 2 3 31 31 H 1.09001 * 109.46773 * 60.00092 * 1 2 3 32 32 H 1.09007 * 109.46363 * 179.97438 * 1 2 3 33 33 H 1.08998 * 110.48735 * 84.88297 * 7 5 3 34 34 H 1.08994 * 110.60053 * 322.29328 * 7 5 3 35 35 H 1.08997 * 110.03482 * 264.32776 * 8 7 5 36 36 H 1.08997 * 110.03040 * 142.89197 * 8 7 5 37 37 H 0.97003 * 120.00207 * 359.97438 * 13 11 9 38 38 H 1.09001 * 109.47092 * 59.99499 * 14 13 11 39 39 H 1.09004 * 109.46930 * 299.99927 * 14 13 11 40 40 H 1.08992 * 109.46671 * 304.97541 * 15 14 13 41 41 H 1.09000 * 109.49989 * 58.66695 * 16 15 14 42 42 H 1.09006 * 109.50021 * 298.56570 * 16 15 14 43 43 H 1.08997 * 109.58900 * 294.85354 * 17 16 15 44 44 H 1.08994 * 109.58760 * 174.41981 * 17 16 15 45 45 H 0.97008 * 119.99943 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.58872 * 173.15048 * 27 18 17 47 47 H 1.09003 * 109.58399 * 293.56745 * 27 18 17 48 48 H 1.08994 * 109.56594 * 185.55179 * 28 27 18 49 49 H 1.09001 * 109.38476 * 65.51623 * 28 27 18 50 50 H 1.08997 * 110.48417 * 95.06523 * 29 9 8 51 51 H 1.08994 * 110.48794 * 217.71538 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9762 0.8134 -0.8978 7 6 4.1502 0.6127 1.2733 8 6 5.5334 1.2743 1.4433 9 6 5.4652 2.6288 0.7164 10 1 6.2038 2.6602 -0.0847 11 6 5.7133 3.7510 1.6911 12 8 4.8546 4.5847 1.8873 13 7 6.8893 3.8281 2.3448 14 6 7.1304 4.9186 3.2929 15 6 8.5304 4.7732 3.8923 16 6 8.7356 5.8377 4.9725 17 6 10.1253 5.6673 5.5944 18 7 11.1296 5.6942 4.5222 19 6 12.1875 6.5618 4.5789 20 1 12.0932 7.4940 5.1159 21 6 13.3811 6.2431 3.9459 22 7 13.6275 4.9991 3.5938 23 14 14.6410 7.5785 3.6009 24 1 14.1295 8.8814 4.0967 25 1 15.9130 7.2497 4.2929 26 1 14.8815 7.6660 2.1381 27 6 10.9739 4.7767 3.3853 28 6 9.5778 4.9532 2.7909 29 6 4.0431 2.7428 0.1293 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0278 -0.0005 33 1 4.2567 -0.4624 1.1293 34 1 3.5192 0.8202 2.1375 35 1 6.3045 0.6482 0.9946 36 1 5.7459 1.4287 2.5012 37 1 7.5760 3.1610 2.1882 38 1 6.3881 4.8777 4.0901 39 1 7.0542 5.8744 2.7743 40 1 8.6352 3.7825 4.3343 41 1 7.9750 5.7237 5.7449 42 1 8.6558 6.8291 4.5263 43 1 10.1763 4.7133 6.1190 44 1 10.3152 6.4817 6.2933 45 1 14.4615 4.7765 3.1511 46 1 11.7236 5.0035 2.6273 47 1 11.0956 3.7485 3.7262 48 1 9.4165 4.2095 2.0106 49 1 9.4896 5.9526 2.3649 50 1 3.3937 3.2961 0.8076 51 1 4.0716 3.2222 -0.8491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146580906.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:10 Heat of formation + Delta-G solvation = -145.870627 kcal Electronic energy + Delta-G solvation = -29532.746879 eV Core-core repulsion = 25430.770674 eV Total energy + Delta-G solvation = -4101.976205 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.83128 -41.00083 -39.47972 -38.22756 -37.35605 -36.36715 -34.52827 -32.54370 -31.53811 -31.20506 -29.81084 -28.72175 -28.02641 -25.81107 -24.05653 -23.74567 -22.90629 -22.32998 -21.16351 -20.85942 -20.38511 -19.00291 -18.65512 -18.07054 -17.62172 -17.32146 -16.86040 -16.85494 -16.67470 -15.96323 -15.65140 -15.29959 -15.13126 -14.94682 -14.69068 -14.59139 -14.55595 -14.11940 -13.98772 -13.78426 -13.40486 -13.26117 -13.11363 -13.05131 -12.84625 -12.64612 -12.57362 -12.27890 -12.25488 -12.15660 -11.94039 -11.90564 -11.82999 -11.77409 -11.69896 -11.59607 -11.41374 -11.19728 -11.11089 -10.71265 -10.52383 -10.03996 -8.65757 -7.86573 -5.30137 1.12556 1.45413 1.48119 1.57924 1.66904 1.70333 2.27556 2.51917 3.27628 3.31320 3.41371 3.72362 3.73529 3.87160 3.97217 4.07129 4.11175 4.14481 4.29313 4.30255 4.30906 4.33834 4.45895 4.52838 4.54538 4.56353 4.65704 4.70544 4.71169 4.75853 4.82807 4.91809 4.95267 5.05675 5.08623 5.19142 5.20908 5.25485 5.28665 5.30761 5.31721 5.36867 5.43663 5.48445 5.58600 5.68498 5.82136 6.41201 6.60337 6.69056 7.17639 7.29051 7.89918 8.39788 9.19552 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.029584 B = 0.001838 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.232728 B =15233.473537 C =15484.311862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.544 6.544 5 C -0.082 4.082 6 H 0.152 0.848 7 C -0.105 4.105 8 C -0.111 4.111 9 C -0.108 4.108 10 H 0.135 0.865 11 C 0.512 3.488 12 O -0.590 6.590 13 N -0.714 5.714 14 C 0.135 3.865 15 C -0.077 4.077 16 C -0.117 4.117 17 C 0.141 3.859 18 N -0.612 5.612 19 C -0.262 4.262 20 H 0.062 0.938 21 C -0.049 4.049 22 N -0.932 5.932 23 Si 0.962 3.038 24 H -0.270 1.270 25 H -0.292 1.292 26 H -0.290 1.290 27 C 0.175 3.825 28 C -0.120 4.120 29 C -0.097 4.097 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.134 0.866 33 H 0.110 0.890 34 H 0.054 0.946 35 H 0.115 0.885 36 H 0.070 0.930 37 H 0.415 0.585 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.051 0.949 43 H 0.019 0.981 44 H 0.050 0.950 45 H 0.250 0.750 46 H 0.050 0.950 47 H 0.002 0.998 48 H 0.075 0.925 49 H 0.041 0.959 50 H 0.059 0.941 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.494 -15.034 -8.251 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.310 3.690 4 O -0.434 6.434 5 C -0.101 4.101 6 H 0.169 0.831 7 C -0.143 4.143 8 C -0.149 4.149 9 C -0.129 4.129 10 H 0.152 0.848 11 C 0.300 3.700 12 O -0.471 6.471 13 N -0.366 5.366 14 C 0.011 3.989 15 C -0.096 4.096 16 C -0.156 4.156 17 C 0.016 3.984 18 N -0.336 5.336 19 C -0.392 4.392 20 H 0.080 0.920 21 C -0.244 4.244 22 N -0.578 5.578 23 Si 0.791 3.209 24 H -0.195 1.195 25 H -0.219 1.219 26 H -0.216 1.216 27 C 0.050 3.950 28 C -0.159 4.159 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.128 0.872 34 H 0.073 0.927 35 H 0.134 0.866 36 H 0.089 0.911 37 H 0.252 0.748 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.070 0.930 43 H 0.036 0.964 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.020 0.980 48 H 0.093 0.907 49 H 0.060 0.940 50 H 0.078 0.922 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.177 -14.202 -8.139 27.563 hybrid contribution 0.913 0.898 -0.091 1.283 sum -21.264 -13.304 -8.229 26.398 Atomic orbital electron populations 1.23535 0.75194 1.05720 1.02234 1.86508 1.24636 1.32654 1.83608 1.24193 0.92855 0.81029 0.70892 1.90687 1.68150 1.37778 1.46770 1.22165 0.85325 0.98489 1.04111 0.83093 1.22339 0.95728 1.01771 0.94453 1.22218 0.98438 0.93124 1.01119 1.22017 0.99442 0.93614 0.97779 0.84761 1.21174 0.81089 0.86562 0.81216 1.90691 1.45897 1.43736 1.66741 1.45977 1.17171 1.29998 1.43448 1.21264 0.96067 0.89806 0.91770 1.21146 0.92360 1.00117 0.95961 1.21868 0.97381 0.98313 0.98062 1.21039 0.88766 0.98294 0.90316 1.44334 1.25648 1.43510 1.20122 1.19524 0.90757 0.97538 1.31404 0.92022 1.25701 0.98508 0.97563 1.02677 1.70174 1.24940 1.17344 1.45354 0.85289 0.78885 0.79521 0.77252 1.19460 1.21882 1.21636 1.20527 0.93975 0.90838 0.89686 1.21970 0.95702 1.00771 0.97459 1.22172 0.94725 0.94596 1.02051 0.92568 0.92097 0.84798 0.87176 0.92705 0.86644 0.91138 0.74827 0.91798 0.93164 0.90189 0.89982 0.92984 0.96354 0.93151 0.94113 0.93119 0.97998 0.90654 0.93976 0.92234 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.54 10.55 -51.49 -0.54 -6.09 16 3 C 0.47 8.92 7.26 71.24 0.52 9.44 16 4 O -0.54 -14.86 15.55 21.98 0.34 -14.52 16 5 C -0.08 -1.07 3.39 -10.25 -0.03 -1.11 16 6 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 7 C -0.11 -1.10 6.25 31.67 0.20 -0.90 16 8 C -0.11 -1.08 6.36 31.32 0.20 -0.88 16 9 C -0.11 -1.60 3.30 -10.81 -0.04 -1.63 16 10 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 11 C 0.51 12.20 6.93 87.66 0.61 12.81 16 12 O -0.59 -20.06 15.42 -3.04 -0.05 -20.10 16 13 N -0.71 -15.26 5.11 -463.07 -2.37 -17.63 16 14 C 0.14 3.49 5.06 86.38 0.44 3.93 16 15 C -0.08 -2.19 2.19 -10.77 -0.02 -2.21 16 16 C -0.12 -3.67 5.36 30.67 0.16 -3.51 16 17 C 0.14 5.64 6.52 86.36 0.56 6.21 16 18 N -0.61 -30.07 3.00 -699.92 -2.10 -32.17 16 19 C -0.26 -14.36 9.59 84.03 0.81 -13.56 16 20 H 0.06 3.34 7.88 -2.91 -0.02 3.32 16 21 C -0.05 -2.72 4.91 84.86 0.42 -2.30 16 22 N -0.93 -54.13 11.20 21.65 0.24 -53.88 16 23 Si 0.96 44.70 29.59 68.60 2.03 46.73 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 27 C 0.18 8.00 5.28 86.22 0.46 8.45 16 28 C -0.12 -4.06 5.23 30.53 0.16 -3.90 16 29 C -0.10 -1.81 5.18 31.66 0.16 -1.65 16 30 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 31 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 32 H 0.13 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.78 8.05 -2.39 -0.02 0.76 16 35 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.07 0.82 7.59 -2.39 -0.02 0.81 16 37 H 0.41 6.76 7.61 -92.71 -0.71 6.05 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 42 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 45 H 0.25 14.00 8.31 -92.70 -0.77 13.23 16 46 H 0.05 2.67 6.04 -2.39 -0.01 2.66 16 47 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 48 H 0.07 2.09 7.15 -2.39 -0.02 2.07 16 49 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.06 1.64 6.30 -2.39 -0.02 1.63 16 51 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -76.88 402.22 3.55 -73.33 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.21 Total: 13.65 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.79 Total: 10.68 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -4.23 Total: -103.68 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -0.25 Total: -40.71 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -76.88 3.55 -73.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146580906.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.541 kcal (2) G-P(sol) polarization free energy of solvation -76.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds