Wall clock time and date at job start Tue Mar 31 2020 21:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00074 * 2 1 4 4 C 1.53001 * 109.46873 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.54705 * 55.14409 * 4 3 2 6 6 O 1.21285 * 119.99642 * 236.77246 * 5 4 3 7 7 N 1.34771 * 119.99930 * 56.77221 * 5 4 3 8 8 C 1.47355 * 135.88274 * 4.51832 * 7 5 4 9 9 C 1.52252 * 87.47534 * 154.22259 * 8 7 5 10 10 C 1.47351 * 135.87695 * 184.88741 * 7 5 4 11 11 C 1.53726 * 116.39666 * 142.36784 * 9 8 7 12 12 C 1.55181 * 101.38652 * 165.09786 * 11 9 8 13 13 N 1.47551 * 105.03396 * 324.51082 * 12 11 9 14 14 C 1.36932 * 125.66228 * 203.91887 * 13 12 11 15 15 H 1.08001 * 120.00253 * 179.97438 * 14 13 12 16 16 C 1.38817 * 119.99991 * 359.97363 * 14 13 12 17 17 N 1.31623 * 119.99608 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00166 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47191 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47045 * 120.00211 * 18 16 14 21 21 H 1.48499 * 109.47025 * 239.99749 * 18 16 14 22 22 C 1.47409 * 108.68302 * 23.89083 * 13 12 11 23 23 C 1.53181 * 109.54330 * 294.87040 * 4 3 2 24 24 C 1.53083 * 109.16411 * 183.15291 * 23 4 3 25 25 O 1.42907 * 109.41467 * 57.61486 * 24 23 4 26 26 C 1.42899 * 114.09709 * 298.84265 * 25 24 23 27 27 C 1.53090 * 109.41865 * 61.15310 * 26 25 24 28 28 H 1.09003 * 109.46600 * 60.00810 * 1 2 3 29 29 H 1.09001 * 109.47239 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47680 * 300.00684 * 1 2 3 31 31 H 1.09002 * 109.46949 * 299.99107 * 3 2 1 32 32 H 1.08997 * 109.47635 * 59.99680 * 3 2 1 33 33 H 1.09001 * 113.53111 * 268.85052 * 8 7 5 34 34 H 1.09003 * 113.52967 * 39.49156 * 8 7 5 35 35 H 1.08998 * 113.53379 * 320.50029 * 10 7 5 36 36 H 1.08998 * 113.53997 * 91.15130 * 10 7 5 37 37 H 1.08997 * 111.03788 * 283.12607 * 11 9 8 38 38 H 1.09002 * 111.03583 * 47.07290 * 11 9 8 39 39 H 1.09002 * 110.32812 * 205.62028 * 12 11 9 40 40 H 1.08997 * 110.41303 * 83.44199 * 12 11 9 41 41 H 0.97003 * 119.99715 * 180.02562 * 17 16 14 42 42 H 1.08992 * 109.99719 * 238.52022 * 22 13 12 43 43 H 1.09002 * 110.02249 * 117.21070 * 22 13 12 44 44 H 1.08998 * 109.52620 * 303.06398 * 23 4 3 45 45 H 1.09007 * 109.51531 * 63.25020 * 23 4 3 46 46 H 1.09000 * 109.48729 * 297.63383 * 24 23 4 47 47 H 1.09001 * 109.49288 * 177.60183 * 24 23 4 48 48 H 1.09010 * 109.47972 * 301.16948 * 26 25 24 49 49 H 1.08997 * 109.49284 * 181.15022 * 26 25 24 50 50 H 1.09000 * 109.52644 * 182.48568 * 27 26 25 51 51 H 1.09005 * 109.51839 * 62.29749 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9744 0.3354 -1.1644 6 8 4.6432 -0.6580 -0.9726 7 7 3.6238 0.6800 -2.4192 8 6 2.9185 1.8108 -3.0478 9 6 3.6902 1.4964 -4.3221 10 6 3.7731 0.0868 -3.7598 11 6 2.9238 1.6639 -5.6441 12 6 4.0841 1.6515 -6.6745 13 7 5.2019 2.3396 -6.0005 14 6 6.2441 2.9705 -6.6255 15 1 7.0162 3.4473 -6.0399 16 6 6.3084 2.9973 -8.0120 17 7 5.3678 2.4158 -8.7257 18 14 7.7306 3.8574 -8.8646 19 1 8.6477 4.4269 -7.8450 20 1 8.4687 2.8798 -9.7041 21 1 7.2057 4.9498 -9.7227 22 6 5.0101 2.2357 -4.5427 23 6 3.9977 0.5391 1.3106 24 6 5.5277 0.4942 1.3362 25 8 6.0443 1.8187 1.1915 26 6 5.6837 2.4547 -0.0363 27 6 4.1599 2.5783 -0.1171 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 1.6886 1.8465 0.8899 33 1 1.8435 1.6558 -3.1406 34 1 3.1705 2.7775 -2.6117 35 1 4.7404 -0.3894 -3.9198 36 1 2.9359 -0.5477 -4.0508 37 1 2.2436 0.8286 -5.8106 38 1 2.3888 2.6132 -5.6687 39 1 3.7955 2.1915 -7.5763 40 1 4.3633 0.6270 -6.9204 41 1 5.4129 2.4341 -9.6945 42 1 4.9579 3.2311 -4.1018 43 1 5.8310 1.6737 -4.0973 44 1 3.6364 1.1275 2.1541 45 1 3.6024 -0.4746 1.3765 46 1 5.8870 -0.1276 0.5162 47 1 5.8635 0.0747 2.2846 48 1 6.0450 1.8585 -0.8743 49 1 6.1316 3.4476 -0.0769 50 1 3.8806 3.0231 -1.0722 51 1 3.8019 3.2079 0.6975 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147682329.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:26 Heat of formation + Delta-G solvation = -51.675944 kcal Electronic energy + Delta-G solvation = -32091.998176 eV Core-core repulsion = 27994.106559 eV Total energy + Delta-G solvation = -4097.891617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.31995 -39.78531 -37.96598 -37.58114 -35.70339 -34.36697 -32.26697 -31.24308 -29.74638 -28.68108 -28.12321 -26.47923 -25.97290 -25.88359 -24.03971 -23.68890 -22.98571 -21.52240 -20.38847 -18.70487 -18.32735 -17.03532 -16.88908 -16.65332 -16.41350 -16.09679 -15.85343 -15.75858 -15.43723 -14.84705 -14.67594 -14.51839 -14.32584 -13.96089 -13.70655 -13.41639 -13.31029 -12.87330 -12.69179 -12.46876 -12.24306 -12.10658 -12.09274 -11.98995 -11.70938 -11.57334 -11.40879 -11.11048 -10.98369 -10.83173 -10.81543 -10.55358 -10.46669 -10.10435 -10.05032 -10.01901 -9.82177 -9.71872 -9.55815 -9.24179 -8.68375 -8.51908 -6.87804 -5.68844 -3.10358 2.67438 2.89374 3.35957 3.38222 3.44299 3.46421 3.84656 4.16551 4.41627 4.45467 4.49676 4.55394 4.69287 4.83918 4.92377 4.96040 5.00621 5.10060 5.12778 5.16768 5.19689 5.27446 5.36278 5.38697 5.46751 5.47393 5.50260 5.57542 5.62041 5.64543 5.70745 5.75579 5.80735 5.91794 5.96365 5.99673 6.09049 6.13429 6.21989 6.46659 6.51297 6.65405 6.70815 6.80787 7.15959 7.46727 7.59252 7.81071 7.86501 8.25204 8.31573 9.18466 9.78821 10.43178 11.35235 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.003323 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.467670 B = 8424.965093 C = 9549.575955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.073 3.927 4 C -0.071 4.071 5 C 0.562 3.438 6 O -0.537 6.537 7 N -0.638 5.638 8 C 0.108 3.892 9 C -0.102 4.102 10 C 0.123 3.877 11 C -0.129 4.129 12 C 0.154 3.846 13 N -0.604 5.604 14 C -0.222 4.222 15 H 0.078 0.922 16 C -0.010 4.010 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.166 3.834 23 C -0.123 4.123 24 C 0.047 3.953 25 O -0.384 6.384 26 C 0.061 3.939 27 C -0.147 4.147 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.107 0.893 40 H 0.013 0.987 41 H 0.251 0.749 42 H 0.028 0.972 43 H 0.024 0.976 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.054 0.946 49 H 0.100 0.900 50 H 0.085 0.915 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.183 -0.841 18.353 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C -0.004 4.004 4 C -0.075 4.075 5 C 0.351 3.649 6 O -0.415 6.415 7 N -0.372 5.372 8 C -0.015 4.015 9 C -0.103 4.103 10 C 0.001 3.999 11 C -0.168 4.168 12 C 0.029 3.971 13 N -0.330 5.330 14 C -0.350 4.350 15 H 0.096 0.904 16 C -0.206 4.206 17 N -0.570 5.570 18 Si 0.744 3.256 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.040 3.960 23 C -0.161 4.161 24 C -0.030 4.030 25 O -0.303 6.303 26 C -0.016 4.016 27 C -0.185 4.185 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.124 0.876 40 H 0.031 0.969 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.042 0.958 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.109 0.891 48 H 0.072 0.928 49 H 0.118 0.882 50 H 0.103 0.897 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.434 -1.478 18.619 21.394 hybrid contribution 0.070 0.460 -0.653 0.802 sum -10.364 -1.018 17.966 20.766 Atomic orbital electron populations 1.22742 0.80802 1.02913 0.99935 1.87949 1.19770 1.27073 1.95368 1.22545 0.91298 0.85465 1.01053 1.20867 0.94764 0.96564 0.95265 1.19627 0.79039 0.84722 0.81472 1.90625 1.39287 1.27864 1.83692 1.49699 1.56959 1.25293 1.05243 1.23105 0.97048 0.90439 0.90897 1.22176 0.98296 0.95548 0.94292 1.22832 1.02519 0.96217 0.78363 1.22772 0.98816 1.00768 0.94456 1.21972 0.83961 0.96102 0.95080 1.44609 1.25769 1.63921 0.98693 1.19111 0.99716 1.26758 0.89418 0.90447 1.24774 0.98808 1.00917 0.96070 1.69802 1.33695 1.48604 1.04937 0.86006 0.81335 0.78746 0.79466 1.20519 1.21741 1.21738 1.20716 0.91686 0.95910 0.87660 1.21976 0.97473 1.02287 0.94379 1.22897 0.92436 0.84305 1.03339 1.87889 1.74508 1.29353 1.38542 1.22532 0.92960 0.98673 0.87398 1.22320 0.97599 0.94445 1.04100 0.93967 0.89537 0.94072 0.92467 0.92230 0.89861 0.90347 0.90194 0.89937 0.91894 0.91393 0.87552 0.96854 0.93772 0.95444 0.95788 0.90840 0.89566 0.90202 0.89141 0.92801 0.88212 0.89675 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.40 9.80 -35.23 -0.35 -4.74 16 3 C 0.07 0.73 4.62 37.16 0.17 0.90 16 4 C -0.07 -0.84 0.39 -155.47 -0.06 -0.90 16 5 C 0.56 8.54 4.97 -10.99 -0.05 8.49 16 6 O -0.54 -9.99 14.53 5.55 0.08 -9.91 16 7 N -0.64 -9.18 3.59 -185.48 -0.67 -9.84 16 8 C 0.11 1.32 5.73 -7.46 -0.04 1.28 16 9 C -0.10 -1.60 1.05 -155.10 -0.16 -1.76 16 10 C 0.12 1.90 7.90 -7.60 -0.06 1.84 16 11 C -0.13 -2.16 6.49 -25.20 -0.16 -2.32 16 12 C 0.15 3.51 5.90 -2.31 -0.01 3.50 16 13 N -0.60 -14.85 3.41 -170.37 -0.58 -15.43 16 14 C -0.22 -6.04 10.28 -15.06 -0.15 -6.19 16 15 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 16 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 17 N -0.92 -26.18 10.09 55.49 0.56 -25.62 16 18 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 C 0.17 3.29 6.79 -3.60 -0.02 3.27 16 23 C -0.12 -1.44 4.43 -26.59 -0.12 -1.56 16 24 C 0.05 0.60 6.55 37.20 0.24 0.84 16 25 O -0.38 -5.20 10.77 -35.23 -0.38 -5.58 16 26 C 0.06 0.75 6.62 37.20 0.25 1.00 16 27 C -0.15 -1.52 4.85 -26.59 -0.13 -1.65 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.52 6.32 -51.93 -0.33 0.19 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 34 H 0.08 0.86 5.81 -51.93 -0.30 0.56 16 35 H 0.08 1.40 8.06 -51.93 -0.42 0.98 16 36 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 37 H 0.06 0.91 7.98 -51.93 -0.41 0.50 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.11 2.76 5.89 -51.93 -0.31 2.45 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.03 0.53 8.07 -51.93 -0.42 0.11 16 43 H 0.02 0.51 7.92 -51.93 -0.41 0.10 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.09 1.10 7.85 -51.92 -0.41 0.69 16 46 H 0.08 1.23 5.71 -51.93 -0.30 0.94 16 47 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.05 0.78 7.38 -51.92 -0.38 0.40 16 49 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 50 H 0.08 0.84 5.32 -51.93 -0.28 0.56 16 51 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 386.04 15.07 5.82 5.82 Total: -1.00 -32.43 386.04 -8.41 -40.85 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -8.57 Total: 0.01 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 0.69 Total: 7.71 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.69 Total: -50.89 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.64 Total: -20.23 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.43 -8.41 -40.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147682329.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.830 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds