Wall clock time and date at job start Tue Mar 31 2020 21:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00074 * 2 1 4 4 C 1.53001 * 109.46873 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.54705 * 55.14409 * 4 3 2 6 6 O 1.21285 * 119.99642 * 236.77246 * 5 4 3 7 7 N 1.34771 * 119.99930 * 56.77221 * 5 4 3 8 8 C 1.47355 * 135.88274 * 4.51832 * 7 5 4 9 9 C 1.52252 * 87.47534 * 154.22259 * 8 7 5 10 10 C 1.47351 * 135.87695 * 184.88741 * 7 5 4 11 11 C 1.53726 * 116.39666 * 142.36784 * 9 8 7 12 12 C 1.55181 * 101.38652 * 165.09786 * 11 9 8 13 13 N 1.47551 * 105.03396 * 324.51082 * 12 11 9 14 14 C 1.36932 * 125.66228 * 203.91887 * 13 12 11 15 15 H 1.08001 * 120.00253 * 179.97438 * 14 13 12 16 16 C 1.38817 * 119.99991 * 359.97363 * 14 13 12 17 17 N 1.31623 * 119.99608 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00166 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47191 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47045 * 120.00211 * 18 16 14 21 21 H 1.48499 * 109.47025 * 239.99749 * 18 16 14 22 22 C 1.47409 * 108.68302 * 23.89083 * 13 12 11 23 23 C 1.53181 * 109.54330 * 294.87040 * 4 3 2 24 24 C 1.53083 * 109.16411 * 183.15291 * 23 4 3 25 25 O 1.42907 * 109.41467 * 57.61486 * 24 23 4 26 26 C 1.42899 * 114.09709 * 298.84265 * 25 24 23 27 27 C 1.53090 * 109.41865 * 61.15310 * 26 25 24 28 28 H 1.09003 * 109.46600 * 60.00810 * 1 2 3 29 29 H 1.09001 * 109.47239 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47680 * 300.00684 * 1 2 3 31 31 H 1.09002 * 109.46949 * 299.99107 * 3 2 1 32 32 H 1.08997 * 109.47635 * 59.99680 * 3 2 1 33 33 H 1.09001 * 113.53111 * 268.85052 * 8 7 5 34 34 H 1.09003 * 113.52967 * 39.49156 * 8 7 5 35 35 H 1.08998 * 113.53379 * 320.50029 * 10 7 5 36 36 H 1.08998 * 113.53997 * 91.15130 * 10 7 5 37 37 H 1.08997 * 111.03788 * 283.12607 * 11 9 8 38 38 H 1.09002 * 111.03583 * 47.07290 * 11 9 8 39 39 H 1.09002 * 110.32812 * 205.62028 * 12 11 9 40 40 H 1.08997 * 110.41303 * 83.44199 * 12 11 9 41 41 H 0.97003 * 119.99715 * 180.02562 * 17 16 14 42 42 H 1.08992 * 109.99719 * 238.52022 * 22 13 12 43 43 H 1.09002 * 110.02249 * 117.21070 * 22 13 12 44 44 H 1.08998 * 109.52620 * 303.06398 * 23 4 3 45 45 H 1.09007 * 109.51531 * 63.25020 * 23 4 3 46 46 H 1.09000 * 109.48729 * 297.63383 * 24 23 4 47 47 H 1.09001 * 109.49288 * 177.60183 * 24 23 4 48 48 H 1.09010 * 109.47972 * 301.16948 * 26 25 24 49 49 H 1.08997 * 109.49284 * 181.15022 * 26 25 24 50 50 H 1.09000 * 109.52644 * 182.48568 * 27 26 25 51 51 H 1.09005 * 109.51839 * 62.29749 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9744 0.3354 -1.1644 6 8 4.6432 -0.6580 -0.9726 7 7 3.6238 0.6800 -2.4192 8 6 2.9185 1.8108 -3.0478 9 6 3.6902 1.4964 -4.3221 10 6 3.7731 0.0868 -3.7598 11 6 2.9238 1.6639 -5.6441 12 6 4.0841 1.6515 -6.6745 13 7 5.2019 2.3396 -6.0005 14 6 6.2441 2.9705 -6.6255 15 1 7.0162 3.4473 -6.0399 16 6 6.3084 2.9973 -8.0120 17 7 5.3678 2.4158 -8.7257 18 14 7.7306 3.8574 -8.8646 19 1 8.6477 4.4269 -7.8450 20 1 8.4687 2.8798 -9.7041 21 1 7.2057 4.9498 -9.7227 22 6 5.0101 2.2357 -4.5427 23 6 3.9977 0.5391 1.3106 24 6 5.5277 0.4942 1.3362 25 8 6.0443 1.8187 1.1915 26 6 5.6837 2.4547 -0.0363 27 6 4.1599 2.5783 -0.1171 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 1.6886 1.8465 0.8899 33 1 1.8435 1.6558 -3.1406 34 1 3.1705 2.7775 -2.6117 35 1 4.7404 -0.3894 -3.9198 36 1 2.9359 -0.5477 -4.0508 37 1 2.2436 0.8286 -5.8106 38 1 2.3888 2.6132 -5.6687 39 1 3.7955 2.1915 -7.5763 40 1 4.3633 0.6270 -6.9204 41 1 5.4129 2.4341 -9.6945 42 1 4.9579 3.2311 -4.1018 43 1 5.8310 1.6737 -4.0973 44 1 3.6364 1.1275 2.1541 45 1 3.6024 -0.4746 1.3765 46 1 5.8870 -0.1276 0.5162 47 1 5.8635 0.0747 2.2846 48 1 6.0450 1.8585 -0.8743 49 1 6.1316 3.4476 -0.0769 50 1 3.8806 3.0231 -1.0722 51 1 3.8019 3.2079 0.6975 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147682329.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:25 Heat of formation + Delta-G solvation = -74.320252 kcal Electronic energy + Delta-G solvation = -32092.980107 eV Core-core repulsion = 27994.106559 eV Total energy + Delta-G solvation = -4098.873548 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.41669 -40.94106 -38.83546 -38.66289 -37.32611 -35.31414 -34.09655 -32.22749 -31.36933 -29.97806 -29.07690 -27.73269 -27.33663 -26.75928 -25.59641 -24.65316 -23.95334 -22.60436 -22.15583 -19.94629 -19.54251 -18.83282 -17.82104 -17.67253 -17.29711 -17.09685 -16.92038 -16.79674 -16.67667 -16.34298 -15.91205 -15.76122 -15.51629 -15.23148 -14.94258 -14.49510 -14.37346 -14.23382 -13.84325 -13.73270 -13.45192 -13.30489 -13.21669 -13.06355 -12.94523 -12.81874 -12.75179 -12.54049 -12.32946 -12.24061 -11.99887 -11.93155 -11.82592 -11.69956 -11.52670 -11.44354 -11.19441 -10.78680 -10.72624 -10.54808 -10.35482 -9.69464 -8.88138 -7.77047 -5.20870 1.46762 1.47732 1.57585 1.57692 1.78991 2.49145 2.67612 2.89601 3.20233 3.25674 3.39970 3.53264 3.60642 3.69633 3.73840 3.87707 3.96787 4.15088 4.16694 4.23863 4.28433 4.34022 4.35599 4.40249 4.51820 4.56520 4.57614 4.60261 4.63553 4.68488 4.72509 4.74123 4.77044 4.82051 4.86006 4.89144 4.94438 5.03726 5.07064 5.09634 5.14598 5.16771 5.21557 5.47439 5.68469 5.84811 6.16977 6.20163 6.33275 6.75347 7.11259 7.12503 7.78829 8.42100 9.24486 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.003323 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.467670 B = 8424.965093 C = 9549.575955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.414 6.414 3 C 0.074 3.926 4 C -0.069 4.069 5 C 0.554 3.446 6 O -0.584 6.584 7 N -0.639 5.639 8 C 0.125 3.875 9 C -0.097 4.097 10 C 0.118 3.882 11 C -0.107 4.107 12 C 0.153 3.847 13 N -0.626 5.626 14 C -0.238 4.238 15 H 0.076 0.924 16 C -0.063 4.063 17 N -0.945 5.945 18 Si 0.976 3.024 19 H -0.270 1.270 20 H -0.295 1.295 21 H -0.287 1.287 22 C 0.166 3.834 23 C -0.118 4.118 24 C 0.045 3.955 25 O -0.393 6.393 26 C 0.055 3.945 27 C -0.139 4.139 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.044 0.956 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.074 0.926 40 H -0.019 1.019 41 H 0.247 0.753 42 H 0.041 0.959 43 H 0.001 0.999 44 H 0.100 0.900 45 H 0.071 0.929 46 H 0.045 0.955 47 H 0.106 0.894 48 H 0.019 0.981 49 H 0.118 0.882 50 H 0.095 0.905 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.730 1.154 20.368 24.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.334 6.334 3 C -0.002 4.002 4 C -0.072 4.072 5 C 0.346 3.654 6 O -0.465 6.465 7 N -0.373 5.373 8 C 0.003 3.997 9 C -0.098 4.098 10 C -0.005 4.005 11 C -0.146 4.146 12 C 0.028 3.972 13 N -0.352 5.352 14 C -0.367 4.367 15 H 0.094 0.906 16 C -0.256 4.256 17 N -0.595 5.595 18 Si 0.805 3.195 19 H -0.194 1.194 20 H -0.223 1.223 21 H -0.214 1.214 22 C 0.041 3.959 23 C -0.156 4.156 24 C -0.031 4.031 25 O -0.312 6.312 26 C -0.021 4.021 27 C -0.177 4.177 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.119 0.881 35 H 0.063 0.937 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.092 0.908 40 H -0.001 1.001 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.019 0.981 44 H 0.118 0.882 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.124 0.876 48 H 0.038 0.962 49 H 0.136 0.864 50 H 0.113 0.887 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.007 0.540 20.656 24.416 hybrid contribution 0.957 -0.239 -1.287 1.621 sum -12.050 0.301 19.369 22.813 Atomic orbital electron populations 1.22896 0.79125 1.03488 1.01273 1.87922 1.21688 1.28146 1.95652 1.22626 0.89228 0.85332 1.03055 1.20937 0.96736 0.96372 0.93171 1.20399 0.78093 0.84612 0.82325 1.90610 1.41239 1.30181 1.84424 1.49748 1.57008 1.25814 1.04729 1.23204 0.98216 0.90660 0.87573 1.21961 0.96518 0.95536 0.95805 1.22855 1.01661 0.96288 0.79668 1.22587 0.96811 1.02959 0.92203 1.21794 0.85930 0.93417 0.96083 1.44919 1.25741 1.63603 1.00926 1.19434 1.00602 1.26696 0.89987 0.90589 1.25554 1.01251 1.02026 0.96750 1.70049 1.35093 1.49724 1.04657 0.85044 0.78676 0.77508 0.78312 1.19415 1.22277 1.21382 1.20799 0.93399 0.96750 0.84992 1.21931 0.96065 1.02042 0.95514 1.22872 0.93757 0.83713 1.02750 1.87871 1.75086 1.29392 1.38890 1.22644 0.95011 0.98643 0.85824 1.22318 0.95512 0.93967 1.05875 0.92900 0.89524 0.92365 0.91039 0.89506 0.86116 0.88143 0.93708 0.87688 0.88936 0.89659 0.90781 1.00118 0.94336 0.94150 0.98128 0.88168 0.91071 0.93673 0.87591 0.96249 0.86445 0.88672 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -8.25 9.80 -148.98 -1.46 -9.71 16 3 C 0.07 1.14 4.62 71.98 0.33 1.48 16 4 C -0.07 -1.45 0.39 -52.81 -0.02 -1.47 16 5 C 0.55 16.48 4.97 87.66 0.44 16.91 16 6 O -0.58 -22.58 14.53 -3.04 -0.04 -22.63 16 7 N -0.64 -17.40 3.59 -859.13 -3.08 -20.48 16 8 C 0.13 2.56 5.73 83.70 0.48 3.04 16 9 C -0.10 -2.89 1.05 -52.55 -0.05 -2.94 16 10 C 0.12 3.59 7.90 83.61 0.66 4.25 16 11 C -0.11 -3.34 6.49 31.59 0.21 -3.14 16 12 C 0.15 7.14 5.90 86.93 0.51 7.65 16 13 N -0.63 -31.50 3.41 -692.93 -2.36 -33.86 16 14 C -0.24 -13.28 10.28 84.04 0.86 -12.42 16 15 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 16 C -0.06 -3.54 5.49 84.86 0.47 -3.08 16 17 N -0.95 -55.42 10.09 21.65 0.22 -55.20 16 18 Si 0.98 45.52 29.55 68.60 2.03 47.54 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 22 C 0.17 6.58 6.79 86.17 0.58 7.16 16 23 C -0.12 -2.54 4.43 30.68 0.14 -2.41 16 24 C 0.05 1.16 6.55 72.01 0.47 1.63 16 25 O -0.39 -10.31 10.77 -148.98 -1.60 -11.91 16 26 C 0.06 1.30 6.62 72.01 0.48 1.77 16 27 C -0.14 -2.41 4.85 30.69 0.15 -2.26 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.89 6.32 -2.39 -0.02 0.87 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.12 1.73 8.01 -2.39 -0.02 1.71 16 34 H 0.10 1.69 5.81 -2.39 -0.01 1.67 16 35 H 0.04 1.66 8.06 -2.39 -0.02 1.64 16 36 H 0.11 2.73 8.04 -2.39 -0.02 2.71 16 37 H 0.09 2.39 7.98 -2.39 -0.02 2.37 16 38 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.07 3.97 5.89 -2.39 -0.01 3.95 16 40 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 41 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 42 H 0.04 1.50 8.07 -2.39 -0.02 1.49 16 43 H 0.00 0.03 7.92 -2.39 -0.02 0.01 16 44 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.07 1.76 7.85 -2.38 -0.02 1.74 16 46 H 0.05 1.48 5.71 -2.39 -0.01 1.47 16 47 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.02 0.58 7.38 -2.38 -0.02 0.56 16 49 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.10 1.46 5.32 -2.39 -0.01 1.45 16 51 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -76.21 386.04 1.55 -74.66 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.91 Total: 13.81 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 6.95 Total: 17.78 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -5.23 Total: -109.54 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -3.11 Total: -44.25 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -76.21 1.55 -74.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147682329.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.337 kcal (2) G-P(sol) polarization free energy of solvation -76.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds