Wall clock time and date at job start Tue Mar 31 2020 21:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99619 * 2 1 4 4 C 1.53002 * 109.46828 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47140 * 175.31328 * 4 3 2 6 6 N 1.46501 * 109.45695 * 299.06023 * 5 4 3 7 7 C 1.34772 * 120.00113 * 301.77910 * 6 5 4 8 8 O 1.21283 * 119.99802 * 354.52401 * 7 6 5 9 9 C 1.50703 * 120.00337 * 174.52890 * 7 6 5 10 10 C 1.55601 * 120.87560 * 250.79426 * 9 7 6 11 11 C 1.52997 * 60.07996 * 248.33323 * 10 9 7 12 12 H 1.09001 * 119.80862 * 112.74816 * 11 10 9 13 13 C 1.54484 * 118.06731 * 269.00160 * 11 10 9 14 14 O 1.44424 * 104.80247 * 88.09950 * 13 11 10 15 15 C 1.44432 * 105.27289 * 319.49135 * 14 13 11 16 16 C 1.53038 * 109.46146 * 59.02806 * 5 4 3 17 17 C 1.53166 * 109.33110 * 181.38854 * 16 5 4 18 18 N 1.46933 * 108.76330 * 305.36140 * 17 16 5 19 19 C 1.36939 * 120.62734 * 233.62697 * 18 17 16 20 20 H 1.07998 * 120.00183 * 143.16731 * 19 18 17 21 21 C 1.38819 * 120.00026 * 323.16974 * 19 18 17 22 22 N 1.31623 * 119.99926 * 355.86204 * 21 19 18 23 23 Si 1.86797 * 120.00019 * 175.85470 * 21 19 18 24 24 H 1.48496 * 109.47193 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46708 * 120.00024 * 23 21 19 26 26 H 1.48494 * 109.47294 * 240.00008 * 23 21 19 27 27 C 1.46923 * 118.74016 * 53.60639 * 18 17 16 28 28 C 1.53037 * 109.46369 * 179.08738 * 5 4 3 29 29 H 1.08996 * 109.47169 * 60.00162 * 1 2 3 30 30 H 1.09008 * 109.46733 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47453 * 299.99736 * 1 2 3 32 32 H 1.09004 * 109.47187 * 60.00503 * 3 2 1 33 33 H 1.09001 * 109.47667 * 300.00210 * 3 2 1 34 34 H 1.08986 * 109.47167 * 55.31263 * 4 3 2 35 35 H 1.08997 * 109.47132 * 295.30515 * 4 3 2 36 36 H 0.97006 * 120.00150 * 121.77984 * 6 5 4 37 37 H 1.09005 * 117.24711 * 140.78624 * 10 9 7 38 38 H 1.08996 * 117.95842 * 355.57316 * 10 9 7 39 39 H 1.09001 * 110.37343 * 206.92809 * 13 11 10 40 40 H 1.08993 * 110.37166 * 329.15823 * 13 11 10 41 41 H 1.08999 * 110.37063 * 159.34380 * 15 14 13 42 42 H 1.09003 * 110.36997 * 281.56462 * 15 14 13 43 43 H 1.09003 * 109.50534 * 301.32979 * 16 5 4 44 44 H 1.09003 * 109.49705 * 61.42102 * 16 5 4 45 45 H 1.08993 * 109.59484 * 185.57596 * 17 16 5 46 46 H 1.09000 * 109.70359 * 65.20911 * 17 16 5 47 47 H 0.96998 * 119.99739 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.58371 * 186.60060 * 27 18 17 49 49 H 1.08996 * 109.70584 * 66.25220 * 27 18 17 50 50 H 1.09003 * 109.49370 * 298.57834 * 28 5 4 51 51 H 1.08998 * 109.49448 * 58.64128 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1574 2.5776 -0.1172 6 7 3.7355 3.1955 -1.3768 7 6 4.0033 2.5866 -2.5489 8 8 4.6789 1.5796 -2.5687 9 6 3.4634 3.1572 -3.8351 10 6 2.3281 2.4335 -4.6152 11 6 3.7366 2.5043 -5.2085 12 1 4.3261 1.5936 -5.3149 13 6 4.0782 3.6965 -6.1296 14 8 4.5467 4.7303 -5.2365 15 6 3.6723 4.6665 -4.0887 16 6 3.6937 3.4440 1.0560 17 6 4.2902 4.8478 0.9164 18 7 5.7496 4.7310 0.7925 19 6 6.5789 5.4287 1.6296 20 1 7.4980 4.9799 1.9765 21 6 6.2382 6.7127 2.0325 22 7 5.1603 7.2907 1.5463 23 14 7.3095 7.6201 3.2647 24 1 8.4540 6.7582 3.6548 25 1 7.8200 8.8716 2.6495 26 1 6.5064 7.9523 4.4687 27 6 6.3023 3.8513 -0.2464 28 6 5.6829 2.4585 -0.0937 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 1.6886 1.8464 0.8901 33 1 1.6885 1.8465 -0.8899 34 1 3.8518 0.5729 -0.8440 35 1 3.8626 0.7183 0.9299 36 1 3.2633 4.0428 -1.3671 37 1 1.5593 3.0577 -5.0708 38 1 1.9879 1.4672 -4.2430 39 1 4.8627 3.4193 -6.8338 40 1 3.1891 4.0294 -6.6649 41 1 4.1449 5.1346 -3.2252 42 1 2.7212 5.1513 -4.3089 43 1 2.6057 3.5094 1.0524 44 1 4.0286 2.9978 1.9924 45 1 4.0445 5.4387 1.7987 46 1 3.8856 5.3323 0.0278 47 1 4.9220 8.1878 1.8281 48 1 7.3841 3.7847 -0.1312 49 1 6.0637 4.2513 -1.2318 50 1 5.9991 2.0216 0.8536 51 1 6.0108 1.8220 -0.9154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151138081.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:52 Heat of formation + Delta-G solvation = -87.302875 kcal Electronic energy + Delta-G solvation = -32126.162426 eV Core-core repulsion = 28026.725909 eV Total energy + Delta-G solvation = -4099.436517 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.06368 -40.82497 -38.84826 -38.54414 -36.24271 -35.49066 -33.73613 -33.05931 -31.66348 -30.54195 -29.70135 -27.66300 -26.47129 -26.36016 -24.82159 -24.56178 -23.63577 -22.20997 -21.94214 -20.80909 -20.10743 -18.89841 -18.42762 -17.51026 -17.04432 -17.00147 -16.78868 -16.50324 -16.28517 -15.97677 -15.79094 -15.63189 -15.41553 -15.24666 -15.08531 -14.82399 -14.27495 -14.23829 -14.06020 -13.83582 -13.60231 -13.26626 -13.03930 -12.94595 -12.83921 -12.68568 -12.57106 -12.31744 -12.22685 -12.17344 -12.10086 -11.98258 -11.85677 -11.74831 -11.34747 -11.27047 -11.20710 -10.72811 -10.59060 -10.55088 -10.35887 -9.97406 -8.52216 -7.88005 -5.43562 1.45053 1.47754 1.50139 1.57206 2.12266 2.39040 2.49488 2.79567 3.01266 3.29145 3.32699 3.45946 3.61826 3.69783 3.86005 3.94118 4.00969 4.03698 4.08535 4.18845 4.31103 4.36165 4.42744 4.52623 4.54290 4.57517 4.61406 4.64713 4.67909 4.69004 4.75777 4.76951 4.83732 4.87940 4.88974 4.95399 4.99084 5.10418 5.11581 5.15783 5.23043 5.28646 5.47751 5.65162 5.65616 5.70494 5.76875 6.24973 6.45050 6.61908 7.19170 7.27741 7.84053 8.40512 9.17107 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009551 B = 0.004389 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.045647 B = 6378.741598 C = 8377.077161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.072 3.928 4 C -0.119 4.119 5 C 0.202 3.798 6 N -0.701 5.701 7 C 0.562 3.438 8 O -0.568 6.568 9 C -0.231 4.231 10 C -0.074 4.074 11 C -0.159 4.159 12 H 0.118 0.882 13 C 0.069 3.931 14 O -0.398 6.398 15 C 0.088 3.912 16 C -0.134 4.134 17 C 0.184 3.816 18 N -0.604 5.604 19 C -0.270 4.270 20 H 0.054 0.946 21 C -0.034 4.034 22 N -0.927 5.927 23 Si 0.964 3.036 24 H -0.272 1.272 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.157 3.843 28 C -0.131 4.131 29 H 0.049 0.951 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.406 0.594 37 H 0.137 0.863 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.010 0.990 47 H 0.252 0.748 48 H 0.038 0.962 49 H 0.004 0.996 50 H 0.061 0.939 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.422 -10.198 -11.280 20.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.004 4.004 4 C -0.157 4.157 5 C 0.116 3.884 6 N -0.352 5.352 7 C 0.349 3.651 8 O -0.448 6.448 9 C -0.235 4.235 10 C -0.111 4.111 11 C -0.178 4.178 12 H 0.136 0.864 13 C -0.007 4.007 14 O -0.317 6.317 15 C 0.011 3.989 16 C -0.173 4.173 17 C 0.058 3.942 18 N -0.328 5.328 19 C -0.400 4.400 20 H 0.072 0.928 21 C -0.231 4.231 22 N -0.572 5.572 23 Si 0.792 3.208 24 H -0.197 1.197 25 H -0.218 1.218 26 H -0.212 1.212 27 C 0.031 3.969 28 C -0.171 4.171 29 H 0.068 0.932 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.242 0.758 37 H 0.155 0.845 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.118 0.882 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.028 0.972 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.022 0.978 50 H 0.080 0.920 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.696 -10.760 -11.263 20.095 hybrid contribution 0.581 1.191 0.935 1.622 sum -12.116 -9.568 -10.328 18.574 Atomic orbital electron populations 1.22925 0.79505 1.03762 1.00863 1.87837 1.21545 1.28742 1.95592 1.22482 0.92971 0.84274 1.00720 1.21774 0.94244 0.96442 1.03255 1.20015 0.93358 0.91652 0.83368 1.46002 1.58791 1.25399 1.04974 1.19356 0.78636 0.82959 0.84141 1.90612 1.39528 1.27371 1.87314 1.23709 1.11132 0.96187 0.92447 1.23695 0.90286 1.01252 0.95879 1.24379 1.01164 1.00960 0.91271 0.86419 1.23191 1.01554 0.84259 0.91653 1.89210 1.55804 1.55930 1.30803 1.22844 0.95587 0.91232 0.89248 1.22414 1.00719 0.97391 0.96808 1.20552 0.82509 0.92113 0.99016 1.44133 1.01983 1.51388 1.35288 1.19400 1.03856 0.94780 1.21965 0.92825 1.25939 0.98937 0.96667 1.01535 1.70060 1.26770 1.14245 1.46083 0.85271 0.78766 0.78264 0.78517 1.19663 1.21815 1.21240 1.20783 0.95869 0.89870 0.90373 1.22238 0.95297 0.97928 1.01639 0.93193 0.88473 0.93214 0.92175 0.92979 0.91234 0.90763 0.75804 0.84485 0.87077 0.87548 0.88774 0.90536 0.88218 0.89653 0.91283 0.92645 0.97214 0.93890 0.94335 0.97795 0.91998 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.42 -10.83 10.70 -148.98 -1.59 -12.43 16 3 C 0.07 1.81 5.33 71.98 0.38 2.19 16 4 C -0.12 -3.55 4.42 30.60 0.14 -3.42 16 5 C 0.20 6.57 0.35 3.63 0.00 6.57 16 6 N -0.70 -21.08 3.22 -422.80 -1.36 -22.44 16 7 C 0.56 17.33 6.86 87.66 0.60 17.93 16 8 O -0.57 -21.12 13.09 -3.04 -0.04 -21.16 16 9 C -0.23 -5.48 2.92 -51.02 -0.15 -5.63 16 10 C -0.07 -1.15 10.08 31.49 0.32 -0.83 16 11 C -0.16 -3.21 6.81 -9.78 -0.07 -3.28 16 12 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 13 C 0.07 1.28 7.43 72.49 0.54 1.82 16 14 O -0.40 -10.89 11.65 -148.98 -1.74 -12.62 16 15 C 0.09 2.12 7.06 72.48 0.51 2.63 16 16 C -0.13 -4.55 4.62 30.66 0.14 -4.40 16 17 C 0.18 8.13 4.93 86.35 0.43 8.55 16 18 N -0.60 -29.98 2.97 -699.16 -2.07 -32.06 16 19 C -0.27 -14.86 9.53 84.03 0.80 -14.06 16 20 H 0.05 2.98 7.83 -2.91 -0.02 2.96 16 21 C -0.03 -1.87 5.16 84.86 0.44 -1.43 16 22 N -0.93 -52.49 11.11 21.65 0.24 -52.25 16 23 Si 0.96 44.44 29.56 68.60 2.03 46.47 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 25 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 26 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 27 C 0.16 7.04 6.26 86.36 0.54 7.58 16 28 C -0.13 -5.02 4.69 30.67 0.14 -4.87 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 1.40 6.64 -2.39 -0.02 1.38 16 33 H 0.05 1.24 7.49 -2.39 -0.02 1.22 16 34 H 0.07 2.38 6.20 -2.39 -0.01 2.37 16 35 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.41 11.50 6.81 -92.70 -0.63 10.87 16 37 H 0.14 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 2.24 7.70 -2.39 -0.02 2.22 16 42 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.09 2.39 6.45 -2.39 -0.02 2.38 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.06 2.82 6.33 -2.39 -0.02 2.80 16 46 H 0.01 0.44 6.91 -2.39 -0.02 0.43 16 47 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 48 H 0.04 1.78 7.93 -2.39 -0.02 1.76 16 49 H 0.00 0.19 7.74 -2.39 -0.02 0.17 16 50 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 51 H 0.07 2.74 6.16 -2.39 -0.01 2.73 16 Total: -1.00 -69.46 391.29 1.77 -67.69 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.30 Total: 27.76 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 6.01 Total: 11.04 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -3.19 Total: -106.75 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -3.37 Total: -46.21 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -69.46 1.77 -67.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151138081.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.615 kcal (2) G-P(sol) polarization free energy of solvation -69.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds