Wall clock time and date at job start Tue Mar 31 2020 21:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99973 * 2 1 4 4 H 1.09000 * 109.47065 * 30.00455 * 3 2 1 5 5 C 1.50698 * 109.47411 * 269.99965 * 3 2 1 6 6 O 1.21278 * 120.00172 * 175.87092 * 5 3 2 7 7 N 1.34776 * 120.00050 * 355.87524 * 5 3 2 8 8 C 1.46500 * 119.99946 * 185.15340 * 7 5 3 9 9 C 1.53008 * 109.46878 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.46509 * 179.97438 * 9 8 7 11 11 C 1.29206 * 117.50231 * 95.18574 * 10 9 8 12 12 C 1.50326 * 123.57097 * 181.02672 * 11 10 9 13 13 N 1.47009 * 109.16656 * 348.83695 * 12 11 10 14 14 C 1.36935 * 121.37317 * 222.96471 * 13 12 11 15 15 H 1.08006 * 119.99656 * 146.82048 * 14 13 12 16 16 C 1.38807 * 120.00331 * 326.81984 * 14 13 12 17 17 N 1.31622 * 119.99973 * 164.67696 * 16 14 13 18 18 Si 1.86805 * 120.00058 * 344.68684 * 16 14 13 19 19 H 1.48494 * 109.47020 * 85.37911 * 18 16 14 20 20 H 1.48498 * 109.46999 * 205.37916 * 18 16 14 21 21 H 1.48500 * 109.46967 * 325.37840 * 18 16 14 22 22 C 1.47342 * 117.24718 * 42.94595 * 13 12 11 23 23 C 1.49969 * 117.69188 * 274.99219 * 10 9 8 24 24 C 1.53010 * 109.46904 * 149.99976 * 3 2 1 25 25 H 1.09001 * 110.42923 * 62.99294 * 24 3 2 26 26 C 1.54802 * 110.48584 * 300.44752 * 24 3 2 27 27 C 1.55223 * 101.98704 * 220.51582 * 26 24 3 28 28 O 1.44384 * 103.56714 * 36.88310 * 27 26 24 29 29 C 1.43750 * 106.97343 * 320.01428 * 28 27 26 30 30 H 1.09001 * 109.47256 * 59.99840 * 1 2 3 31 31 H 1.09000 * 109.47500 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47230 * 299.99996 * 1 2 3 33 33 H 0.96998 * 120.00043 * 5.14451 * 7 5 3 34 34 H 1.08997 * 109.47587 * 59.99684 * 8 7 5 35 35 H 1.09000 * 109.46884 * 299.99148 * 8 7 5 36 36 H 1.08997 * 109.47198 * 59.99533 * 9 8 7 37 37 H 1.09000 * 109.46738 * 299.99323 * 9 8 7 38 38 H 1.07998 * 118.25687 * 0.84046 * 11 10 9 39 39 H 1.08998 * 109.52229 * 228.92662 * 12 11 10 40 40 H 1.09006 * 109.57327 * 108.77369 * 12 11 10 41 41 H 0.96998 * 119.99792 * 179.97438 * 17 16 14 42 42 H 1.08997 * 109.77335 * 178.61992 * 22 13 12 43 43 H 1.09000 * 109.78240 * 57.81419 * 22 13 12 44 44 H 1.08996 * 109.31509 * 40.70197 * 23 10 9 45 45 H 1.08997 * 109.31705 * 281.08172 * 23 10 9 46 46 H 1.09000 * 110.91386 * 338.64139 * 26 24 3 47 47 H 1.09004 * 110.90909 * 102.24993 * 26 24 3 48 48 H 1.09001 * 110.52441 * 278.38606 * 27 26 24 49 49 H 1.09003 * 110.78381 * 155.50243 * 27 26 24 50 50 H 1.09001 * 109.87374 * 267.08572 * 29 28 27 51 51 H 1.08996 * 110.00455 * 146.00150 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 2.6294 2.8821 -1.6433 7 7 1.9362 0.9328 -2.4442 8 6 2.2404 1.3362 -3.8193 9 6 1.8300 0.2192 -4.7811 10 6 2.1424 0.6345 -6.1957 11 6 3.2682 0.2461 -6.6967 12 6 3.7270 0.5999 -8.0839 13 7 2.6065 1.1967 -8.8252 14 6 2.3504 0.8555 -10.1264 15 1 1.3332 0.8344 -10.4889 16 6 3.3979 0.5366 -10.9795 17 7 3.1554 -0.0745 -12.1197 18 14 5.1519 0.9746 -10.5091 19 1 5.7185 -0.1002 -9.6554 20 1 5.9735 1.1155 -11.7381 21 1 5.1580 2.2568 -9.7600 22 6 1.7703 2.1768 -8.1102 23 6 1.1237 1.4635 -6.9198 24 6 3.3589 1.2632 0.7213 25 1 4.0545 0.6136 0.1898 26 6 3.1774 0.7832 2.1818 27 6 4.1499 1.7169 2.9512 28 8 4.0250 2.9789 2.2610 29 6 3.9428 2.6828 0.8567 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.5346 0.0672 -2.2703 34 1 3.3100 1.5228 -3.9151 35 1 1.6898 2.2452 -4.0615 36 1 0.7604 0.0322 -4.6855 37 1 2.3809 -0.6895 -4.5388 38 1 3.9168 -0.3636 -6.0852 39 1 4.0646 -0.3007 -8.5967 40 1 4.5474 1.3153 -8.0258 41 1 3.8874 -0.2969 -12.7160 42 1 0.9965 2.5572 -8.7769 43 1 2.3895 3.0004 -7.7548 44 1 0.7105 2.2051 -6.2362 45 1 0.3223 0.8176 -7.2784 46 1 2.1504 0.9318 2.5154 47 1 3.4722 -0.2608 2.2877 48 1 5.1716 1.3427 2.8850 49 1 3.8462 1.8177 3.9932 50 1 4.9372 2.7187 0.4116 51 1 3.2893 3.4011 0.3618 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160792416.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:04 Heat of formation + Delta-G solvation = -113.987791 kcal Electronic energy + Delta-G solvation = -29767.891910 eV Core-core repulsion = 25667.298248 eV Total energy + Delta-G solvation = -4100.593662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.62189 -40.07144 -39.63721 -38.56279 -36.87104 -35.12418 -33.86342 -33.49440 -31.91309 -30.97528 -30.35952 -28.36164 -27.26817 -26.28426 -25.03755 -24.07119 -23.59565 -22.60032 -22.06342 -21.38355 -19.67527 -18.74420 -18.28385 -17.71471 -17.50888 -17.36262 -17.00488 -16.52558 -16.33332 -16.13840 -15.98707 -15.71280 -15.45691 -15.34720 -15.22291 -15.04229 -14.68763 -14.37569 -14.20700 -13.89836 -13.73216 -13.47260 -13.32771 -13.08640 -12.85880 -12.76013 -12.64506 -12.61348 -12.41470 -12.26953 -12.17086 -12.14178 -11.98693 -11.71944 -11.63996 -11.60700 -11.33284 -10.75703 -10.72443 -10.40411 -10.16231 -9.67567 -8.86962 -8.19955 -5.59533 1.26774 1.31535 1.38097 1.40373 1.47552 2.10401 2.39008 2.44595 2.98799 3.06417 3.29385 3.41496 3.57101 3.79589 3.85672 3.88931 3.98429 4.03252 4.09890 4.22246 4.23914 4.28996 4.40686 4.42360 4.48862 4.51747 4.57262 4.57896 4.65669 4.67499 4.78106 4.82151 4.83586 4.86179 4.89618 4.91593 4.97991 5.02056 5.06396 5.11036 5.12741 5.31395 5.36872 5.71504 5.82522 5.87864 5.88352 6.06789 6.18070 6.47930 6.88422 7.11083 7.56618 8.04141 9.00155 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021377 B = 0.002084 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.485085 B =13430.621943 C =14049.282091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.376 6.376 3 C 0.095 3.905 4 H 0.105 0.895 5 C 0.488 3.512 6 O -0.573 6.573 7 N -0.708 5.708 8 C 0.129 3.871 9 C -0.081 4.081 10 C -0.108 4.108 11 C -0.173 4.173 12 C 0.145 3.855 13 N -0.623 5.623 14 C -0.247 4.247 15 H 0.050 0.950 16 C -0.031 4.031 17 N -0.958 5.958 18 Si 0.950 3.050 19 H -0.267 1.267 20 H -0.307 1.307 21 H -0.270 1.270 22 C 0.136 3.864 23 C -0.091 4.091 24 C -0.109 4.109 25 H 0.094 0.906 26 C -0.129 4.129 27 C 0.035 3.965 28 O -0.401 6.401 29 C 0.049 3.951 30 H 0.045 0.955 31 H 0.112 0.888 32 H 0.058 0.942 33 H 0.417 0.583 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.056 0.944 40 H 0.030 0.970 41 H 0.263 0.737 42 H 0.060 0.940 43 H 0.035 0.965 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.102 0.898 48 H 0.068 0.932 49 H 0.111 0.889 50 H 0.057 0.943 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.176 -1.775 34.724 35.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.295 6.295 3 C 0.034 3.966 4 H 0.123 0.877 5 C 0.274 3.726 6 O -0.453 6.453 7 N -0.361 5.361 8 C 0.005 3.995 9 C -0.118 4.118 10 C -0.109 4.109 11 C -0.192 4.192 12 C 0.021 3.979 13 N -0.349 5.349 14 C -0.377 4.377 15 H 0.068 0.932 16 C -0.226 4.226 17 N -0.603 5.603 18 Si 0.779 3.221 19 H -0.193 1.193 20 H -0.236 1.236 21 H -0.195 1.195 22 C 0.011 3.989 23 C -0.129 4.129 24 C -0.128 4.128 25 H 0.112 0.888 26 C -0.167 4.167 27 C -0.041 4.041 28 O -0.321 6.321 29 C -0.027 4.027 30 H 0.064 0.936 31 H 0.131 0.869 32 H 0.077 0.923 33 H 0.255 0.745 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.143 0.857 39 H 0.074 0.926 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.053 0.947 44 H 0.110 0.890 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.121 0.879 48 H 0.086 0.914 49 H 0.129 0.871 50 H 0.075 0.925 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.726 -1.029 34.501 34.717 hybrid contribution 0.634 -0.142 -1.002 1.194 sum -3.093 -1.170 33.499 33.662 Atomic orbital electron populations 1.23207 0.78826 1.05000 1.01242 1.87951 1.21767 1.25130 1.94626 1.22253 0.96868 0.86894 0.90589 0.87695 1.21697 0.77111 0.84754 0.89019 1.90722 1.47512 1.21254 1.85834 1.45969 1.62899 1.21331 1.05871 1.21241 1.00331 0.97870 0.80044 1.20832 1.03400 0.97709 0.89909 1.20543 0.95432 0.99313 0.95625 1.22447 0.98506 1.01870 0.96422 1.20236 0.90312 0.95984 0.91401 1.44537 1.34008 1.46811 1.09516 1.18765 0.92598 1.40447 0.85883 0.93230 1.26061 1.02004 0.99315 0.95240 1.69919 1.33139 1.44016 1.13252 0.85872 0.80938 0.79438 0.75873 1.19294 1.23594 1.19485 1.21237 0.93771 0.90622 0.93275 1.20744 0.96841 0.98690 0.96668 1.22462 0.94648 0.97547 0.98176 0.88754 1.23112 1.01283 1.01202 0.91103 1.23885 0.99466 0.82772 0.97960 1.88883 1.94917 1.30148 1.18148 1.23247 1.00798 0.96058 0.82630 0.93638 0.86929 0.92289 0.74539 0.92733 0.91993 0.89008 0.89605 0.85721 0.92604 0.95231 0.92824 0.92133 0.94672 0.89020 0.91460 0.89580 0.87921 0.91364 0.87132 0.92495 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 10.49 113.37 1.19 1.27 16 2 O -0.38 -3.95 8.86 -148.98 -1.32 -5.27 16 3 C 0.10 1.32 1.93 29.85 0.06 1.37 16 4 H 0.11 1.32 7.79 -2.39 -0.02 1.30 16 5 C 0.49 9.74 7.12 87.66 0.62 10.36 16 6 O -0.57 -16.08 14.83 -3.02 -0.04 -16.13 16 7 N -0.71 -12.00 5.50 -463.06 -2.55 -14.54 16 8 C 0.13 2.66 5.66 86.38 0.49 3.15 16 9 C -0.08 -1.57 5.31 29.85 0.16 -1.42 16 10 C -0.11 -3.11 5.10 -14.90 -0.08 -3.19 16 11 C -0.17 -5.78 9.46 27.34 0.26 -5.52 16 12 C 0.14 6.29 4.41 85.42 0.38 6.67 16 13 N -0.62 -30.10 2.69 -703.36 -1.89 -31.99 16 14 C -0.25 -14.33 10.08 84.03 0.85 -13.48 16 15 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 16 C -0.03 -1.85 5.31 84.86 0.45 -1.40 16 17 N -0.96 -60.84 13.97 21.65 0.30 -60.54 16 18 Si 0.95 47.63 24.22 68.60 1.66 49.29 16 19 H -0.27 -12.47 6.56 99.48 0.65 -11.82 16 20 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 21 H -0.27 -13.22 6.76 99.48 0.67 -12.55 16 22 C 0.14 5.30 6.58 86.25 0.57 5.87 16 23 C -0.09 -2.77 5.96 29.65 0.18 -2.59 16 24 C -0.11 -1.52 2.81 -9.80 -0.03 -1.55 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 C -0.13 -1.21 6.42 31.97 0.21 -1.01 16 27 C 0.04 0.40 7.72 72.74 0.56 0.96 16 28 O -0.40 -7.84 11.52 -148.98 -1.72 -9.56 16 29 C 0.05 0.94 6.72 72.35 0.49 1.42 16 30 H 0.04 0.29 8.12 -2.39 -0.02 0.27 16 31 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.06 0.25 8.08 -2.39 -0.02 0.23 16 33 H 0.42 5.11 6.98 -92.71 -0.65 4.47 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.42 8.09 -2.39 -0.02 1.40 16 36 H 0.09 1.48 8.11 -2.39 -0.02 1.46 16 37 H 0.09 1.48 7.77 -2.39 -0.02 1.46 16 38 H 0.13 3.45 7.72 -2.91 -0.02 3.42 16 39 H 0.06 2.64 5.78 -2.39 -0.01 2.62 16 40 H 0.03 1.31 6.27 -2.38 -0.01 1.30 16 41 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 42 H 0.06 2.39 7.96 -2.39 -0.02 2.37 16 43 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 44 H 0.09 2.23 8.08 -2.39 -0.02 2.21 16 45 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.09 0.70 7.87 -2.39 -0.02 0.69 16 47 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 48 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.09 1.99 6.02 -2.39 -0.01 1.97 16 Total: -1.00 -75.07 397.37 0.97 -74.11 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.18 Total: 13.72 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 6.35 Total: 0.92 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -4.14 Total: -107.08 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -3.08 Total: -30.95 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.66 Total: 49.29 kcal Total: -75.07 0.97 -74.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160792416.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.879 kcal (2) G-P(sol) polarization free energy of solvation -75.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds