Wall clock time and date at job start Tue Mar 31 2020 21:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00023 * 2 1 4 4 H 1.08997 * 109.47306 * 29.99628 * 3 2 1 5 5 C 1.50702 * 109.46791 * 269.99760 * 3 2 1 6 6 O 1.21284 * 120.00100 * 355.00365 * 5 3 2 7 7 N 1.34780 * 119.99845 * 174.99986 * 5 3 2 8 8 C 1.46495 * 119.99838 * 180.02562 * 7 5 3 9 9 C 1.53008 * 109.47073 * 180.02562 * 8 7 5 10 10 C 1.50702 * 109.47080 * 179.97438 * 9 8 7 11 11 C 1.29454 * 117.69029 * 94.99677 * 10 9 8 12 12 C 1.50319 * 123.64647 * 180.85565 * 11 10 9 13 13 N 1.47010 * 109.16994 * 349.02293 * 12 11 10 14 14 C 1.36933 * 121.37702 * 222.96871 * 13 12 11 15 15 H 1.08002 * 119.99589 * 155.96989 * 14 13 12 16 16 C 1.38808 * 120.00138 * 335.97099 * 14 13 12 17 17 N 1.31626 * 120.00089 * 344.51484 * 16 14 13 18 18 Si 1.86800 * 120.00065 * 164.51701 * 16 14 13 19 19 H 1.48507 * 109.46946 * 89.99764 * 18 16 14 20 20 H 1.48505 * 109.47336 * 209.99628 * 18 16 14 21 21 H 1.48491 * 109.47124 * 330.00198 * 18 16 14 22 22 C 1.47343 * 117.24477 * 42.94576 * 13 12 11 23 23 C 1.49967 * 117.69447 * 274.73621 * 10 9 8 24 24 C 1.52999 * 109.47336 * 149.99969 * 3 2 1 25 25 H 1.08994 * 110.45725 * 177.39669 * 24 3 2 26 26 C 1.54514 * 110.50826 * 299.99805 * 24 3 2 27 27 C 1.54485 * 104.06189 * 118.64390 * 26 24 3 28 28 O 1.44429 * 104.80070 * 23.97628 * 27 26 24 29 29 C 1.44419 * 105.27767 * 319.48903 * 28 27 26 30 30 H 1.09003 * 109.47193 * 59.99946 * 1 2 3 31 31 H 1.09005 * 109.47651 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47423 * 300.00458 * 1 2 3 33 33 H 0.96998 * 119.99939 * 0.02562 * 7 5 3 34 34 H 1.08999 * 109.47682 * 60.00145 * 8 7 5 35 35 H 1.08999 * 109.47117 * 299.99644 * 8 7 5 36 36 H 1.08999 * 109.46605 * 299.99647 * 9 8 7 37 37 H 1.08999 * 109.47002 * 59.99417 * 9 8 7 38 38 H 1.07997 * 118.18045 * 0.88036 * 11 10 9 39 39 H 1.09002 * 109.52193 * 108.93157 * 12 11 10 40 40 H 1.09002 * 109.52638 * 229.11463 * 12 11 10 41 41 H 0.96998 * 119.99986 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.77630 * 57.81748 * 22 13 12 43 43 H 1.09001 * 109.77282 * 178.56156 * 22 13 12 44 44 H 1.08997 * 109.30989 * 281.29230 * 23 10 9 45 45 H 1.09001 * 109.31069 * 40.71678 * 23 10 9 46 46 H 1.08995 * 110.51153 * 237.29110 * 26 24 3 47 47 H 1.08995 * 110.50956 * 359.86331 * 26 24 3 48 48 H 1.08998 * 110.36911 * 142.80611 * 27 26 24 49 49 H 1.09002 * 110.37072 * 265.14789 * 27 26 24 50 50 H 1.09006 * 110.37037 * 281.68223 * 29 28 27 51 51 H 1.09003 * 110.37216 * 159.34619 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2146 1.7642 -1.4209 6 8 1.9791 1.0104 -2.3414 7 7 2.6589 3.0123 -1.6687 8 6 2.8570 3.4585 -3.0499 9 6 3.3631 4.9025 -3.0518 10 6 3.5675 5.3613 -4.4726 11 6 2.6021 6.0111 -5.0397 12 6 2.6552 6.5137 -6.4554 13 7 4.0290 6.3844 -6.9624 14 6 4.6165 7.3828 -7.6925 15 1 5.6929 7.4649 -7.7268 16 6 3.8287 8.2894 -8.3883 17 7 2.5571 8.0267 -8.6038 18 14 4.5732 9.8823 -9.0190 19 1 5.1051 9.6716 -10.3894 20 1 3.5295 10.9383 -9.0501 21 1 5.6767 10.3033 -8.1191 22 6 4.7479 5.1362 -6.6520 23 6 4.8772 5.0380 -5.1279 24 6 3.3589 1.2633 0.7212 25 1 3.8380 2.2418 0.6906 26 6 3.1770 0.7951 2.1825 27 6 4.0044 -0.5068 2.2653 28 8 4.9848 -0.3885 1.2113 29 6 4.2748 0.1889 0.0941 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.8475 3.6151 -0.9325 34 1 1.9111 3.4040 -3.5886 35 1 3.5904 2.8163 -3.5375 36 1 2.6301 5.5449 -2.5640 37 1 4.3092 4.9565 -2.5132 38 1 1.7091 6.2032 -4.4636 39 1 1.9807 5.9244 -7.0766 40 1 2.3543 7.5610 -6.4817 41 1 2.0065 8.6604 -9.0898 42 1 4.1875 4.2830 -7.0343 43 1 5.7391 5.1591 -7.1050 44 1 5.6365 5.7388 -4.7809 45 1 5.1751 4.0249 -4.8576 46 1 3.5683 1.5411 2.8741 47 1 2.1259 0.5960 2.3916 48 1 4.4968 -0.5824 3.2348 49 1 3.3661 -1.3737 2.0942 50 1 3.6779 -0.5713 -0.4099 51 1 4.9748 0.6476 -0.6042 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160792417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:09 Heat of formation + Delta-G solvation = -91.845671 kcal Electronic energy + Delta-G solvation = -29726.912100 eV Core-core repulsion = 25627.278593 eV Total energy + Delta-G solvation = -4099.633507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.81699 -39.21561 -38.04526 -37.50427 -35.43619 -33.81026 -33.14125 -31.41208 -30.25023 -29.80072 -28.76831 -27.45533 -26.39735 -25.05812 -23.41759 -22.97156 -22.45942 -21.38397 -20.94827 -20.39411 -17.97952 -17.61249 -17.36211 -16.72846 -16.44812 -16.12144 -15.56450 -15.37737 -15.27330 -14.98635 -14.89872 -14.71228 -14.03097 -14.00755 -13.80115 -13.63464 -13.37227 -13.32996 -12.88387 -12.63739 -12.26536 -12.22533 -12.02310 -11.97994 -11.67510 -11.59528 -11.43320 -11.26918 -11.16439 -11.02356 -10.92700 -10.86340 -10.71648 -10.32658 -10.26194 -10.07228 -9.81635 -9.64800 -9.46977 -9.22099 -8.65367 -7.93387 -6.72153 -5.78478 -3.17045 2.32759 2.68751 2.99230 3.31085 3.37814 3.44449 3.46803 3.64453 3.97834 4.23726 4.41629 4.44736 4.49991 4.63854 4.74450 4.93386 4.95992 4.97800 5.07345 5.09572 5.14845 5.25032 5.31095 5.34954 5.38295 5.39968 5.52544 5.54526 5.55610 5.62585 5.66250 5.77378 5.97797 6.01802 6.13593 6.20099 6.27085 6.39046 6.44585 6.54561 6.55474 6.78999 6.91001 7.22400 7.25412 7.33055 7.40526 7.75275 7.87689 7.99035 8.39582 9.21014 9.83964 10.42645 11.31953 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.025198 B = 0.001942 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.911796 B =14411.292737 C =14937.336447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.081 3.919 4 H 0.090 0.910 5 C 0.485 3.515 6 O -0.519 6.519 7 N -0.728 5.728 8 C 0.124 3.876 9 C -0.091 4.091 10 C -0.143 4.143 11 C -0.146 4.146 12 C 0.196 3.804 13 N -0.596 5.596 14 C -0.244 4.244 15 H 0.068 0.932 16 C -0.003 4.003 17 N -0.910 5.910 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.143 3.857 23 C -0.091 4.091 24 C -0.116 4.116 25 H 0.101 0.899 26 C -0.144 4.144 27 C 0.047 3.953 28 O -0.375 6.375 29 C 0.052 3.948 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.042 0.958 33 H 0.398 0.602 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.038 0.962 40 H 0.090 0.910 41 H 0.253 0.747 42 H 0.024 0.976 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.063 0.937 50 H 0.077 0.923 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.642 -13.462 24.835 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.019 3.981 4 H 0.108 0.892 5 C 0.270 3.730 6 O -0.394 6.394 7 N -0.381 5.381 8 C 0.001 3.999 9 C -0.129 4.129 10 C -0.143 4.143 11 C -0.166 4.166 12 C 0.071 3.929 13 N -0.319 5.319 14 C -0.374 4.374 15 H 0.086 0.914 16 C -0.201 4.201 17 N -0.555 5.555 18 Si 0.734 3.266 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.016 3.984 23 C -0.130 4.130 24 C -0.136 4.136 25 H 0.119 0.881 26 C -0.182 4.182 27 C -0.029 4.029 28 O -0.294 6.294 29 C -0.025 4.025 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.232 0.768 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.097 0.903 47 H 0.100 0.900 48 H 0.108 0.892 49 H 0.081 0.919 50 H 0.096 0.904 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.602 -14.152 24.050 28.026 hybrid contribution -0.226 1.571 -0.009 1.587 sum -2.828 -12.581 24.041 27.281 Atomic orbital electron populations 1.22897 0.80299 1.03447 1.00153 1.87975 1.20232 1.24492 1.94373 1.21995 0.96283 0.87272 0.92557 0.89220 1.21265 0.77770 0.82031 0.91959 1.90752 1.49273 1.53529 1.45874 1.46172 1.67932 1.14266 1.09758 1.21466 1.01701 0.95353 0.81398 1.20910 1.01036 0.94211 0.96740 1.20224 0.97286 1.02763 0.94071 1.23121 0.96719 0.97098 0.99647 1.19702 0.86325 1.00908 0.85924 1.44138 1.12452 1.14290 1.61023 1.19170 0.91248 1.04863 1.22100 0.91425 1.24994 0.96342 1.00371 0.98344 1.70021 1.06133 1.35531 1.43822 0.86262 0.78124 0.83481 0.78725 1.21437 1.21596 1.20575 1.20991 0.96382 0.89393 0.91621 1.20787 0.94408 0.99255 0.98544 1.22696 0.93590 1.01785 0.95482 0.88116 1.22927 1.01815 0.98328 0.95121 1.23377 0.90753 0.96910 0.91897 1.89126 1.33106 1.83652 1.23471 1.23444 0.94546 0.94814 0.89688 0.93431 0.89025 0.93922 0.76819 0.91275 0.91145 0.91576 0.91414 0.89124 0.94433 0.89159 0.93648 0.95808 0.92541 0.91896 0.92911 0.90317 0.90014 0.89232 0.91895 0.90441 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.81 101.05 1.09 1.30 16 2 O -0.35 -3.39 8.30 -55.09 -0.46 -3.85 16 3 C 0.08 0.65 2.10 -27.88 -0.06 0.59 16 4 H 0.09 0.50 7.79 -51.93 -0.40 0.09 16 5 C 0.49 5.47 6.64 -10.98 -0.07 5.40 16 6 O -0.52 -8.29 16.51 -14.31 -0.24 -8.53 16 7 N -0.73 -6.98 5.51 -60.29 -0.33 -7.32 16 8 C 0.12 1.52 5.66 -4.04 -0.02 1.50 16 9 C -0.09 -1.12 5.32 -27.88 -0.15 -1.27 16 10 C -0.14 -2.41 5.11 -100.99 -0.52 -2.92 16 11 C -0.15 -2.80 9.47 -35.78 -0.34 -3.14 16 12 C 0.20 4.72 5.23 -5.10 -0.03 4.70 16 13 N -0.60 -15.12 3.01 -173.56 -0.52 -15.64 16 14 C -0.24 -6.75 9.71 -15.06 -0.15 -6.89 16 15 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 16 C 0.00 -0.08 5.01 -17.43 -0.09 -0.17 16 17 N -0.91 -26.41 11.08 55.49 0.61 -25.80 16 18 Si 0.90 21.76 29.58 -169.99 -5.03 16.73 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.14 3.02 6.59 -3.44 -0.02 3.00 16 23 C -0.09 -1.59 5.95 -28.09 -0.17 -1.76 16 24 C -0.12 -0.83 2.98 -89.05 -0.27 -1.09 16 25 H 0.10 0.56 7.93 -51.93 -0.41 0.14 16 26 C -0.14 -0.83 6.51 -25.16 -0.16 -0.99 16 27 C 0.05 0.35 7.63 37.94 0.29 0.64 16 28 O -0.37 -3.97 11.65 -35.23 -0.41 -4.38 16 29 C 0.05 0.51 6.59 37.93 0.25 0.76 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.21 8.09 -51.93 -0.42 -0.21 16 33 H 0.40 2.56 8.27 -40.82 -0.34 2.22 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 36 H 0.07 0.75 7.78 -51.93 -0.40 0.34 16 37 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 38 H 0.09 1.52 7.73 -52.49 -0.41 1.12 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.09 2.40 6.41 -51.93 -0.33 2.07 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.41 7.52 -51.93 -0.39 0.02 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.08 0.89 7.06 -51.93 -0.37 0.53 16 51 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 406.73 15.07 6.13 6.13 Total: -1.00 -33.73 406.73 -9.57 -43.30 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -8.93 Total: -0.29 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -0.40 Total: -0.36 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.24 Total: -48.75 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -1.10 Total: -16.75 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.73 -9.57 -43.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160792417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.546 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds