Wall clock time and date at job start Tue Mar 31 2020 21:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00373 * 2 1 4 4 H 1.08998 * 109.46533 * 29.99410 * 3 2 1 5 5 C 1.50696 * 109.47452 * 149.99991 * 3 2 1 6 6 O 1.21278 * 120.00264 * 4.99520 * 5 3 2 7 7 N 1.34778 * 119.99989 * 185.00325 * 5 3 2 8 8 C 1.46496 * 120.00139 * 179.97438 * 7 5 3 9 9 C 1.52996 * 109.47266 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47219 * 179.97438 * 9 8 7 11 11 C 1.29456 * 117.69227 * 94.99861 * 10 9 8 12 12 C 1.50327 * 123.65271 * 180.87849 * 11 10 9 13 13 N 1.47002 * 109.16306 * 349.02542 * 12 11 10 14 14 C 1.36930 * 121.37735 * 222.67320 * 13 12 11 15 15 H 1.07998 * 120.00553 * 156.01063 * 14 13 12 16 16 C 1.38819 * 119.99807 * 336.00745 * 14 13 12 17 17 N 1.31619 * 119.99874 * 344.69195 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 164.68264 * 16 14 13 19 19 H 1.48504 * 109.47009 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46886 * 120.00122 * 18 16 14 21 21 H 1.48494 * 109.47333 * 240.00392 * 18 16 14 22 22 C 1.47343 * 117.25228 * 42.94309 * 13 12 11 23 23 C 1.49966 * 117.69559 * 275.01860 * 10 9 8 24 24 C 1.53007 * 109.46816 * 269.99934 * 3 2 1 25 25 H 1.08994 * 110.74753 * 299.29712 * 24 3 2 26 26 C 1.55306 * 110.84667 * 62.77069 * 24 3 2 27 27 C 1.55200 * 100.82740 * 152.17605 * 26 24 3 28 28 O 1.43649 * 105.26159 * 323.81883 * 27 26 24 29 29 C 1.43233 * 109.97024 * 24.27792 * 28 27 26 30 30 H 1.08999 * 109.46867 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47357 * 300.00198 * 1 2 3 32 32 H 1.08997 * 109.47208 * 60.00370 * 1 2 3 33 33 H 0.96999 * 119.99857 * 359.97438 * 7 5 3 34 34 H 1.09002 * 109.46919 * 59.99538 * 8 7 5 35 35 H 1.08998 * 109.46983 * 299.99860 * 8 7 5 36 36 H 1.09002 * 109.47400 * 59.99990 * 9 8 7 37 37 H 1.08998 * 109.47134 * 299.99925 * 9 8 7 38 38 H 1.08003 * 118.17099 * 0.90692 * 11 10 9 39 39 H 1.08994 * 109.52218 * 229.11926 * 12 11 10 40 40 H 1.08998 * 109.56920 * 108.95900 * 12 11 10 41 41 H 0.96996 * 119.99854 * 179.97438 * 17 16 14 42 42 H 1.09006 * 109.77328 * 57.81270 * 22 13 12 43 43 H 1.09000 * 109.78403 * 178.61566 * 22 13 12 44 44 H 1.08991 * 109.31604 * 281.26858 * 23 10 9 45 45 H 1.09000 * 109.31245 * 40.88523 * 23 10 9 46 46 H 1.09007 * 111.12470 * 270.23885 * 26 24 3 47 47 H 1.09005 * 111.12872 * 34.39970 * 26 24 3 48 48 H 1.08994 * 110.37386 * 204.79437 * 27 26 24 49 49 H 1.09002 * 110.20859 * 82.74849 * 27 26 24 50 50 H 1.08999 * 109.83017 * 238.77775 * 29 28 27 51 51 H 1.09003 * 109.90249 * 117.85060 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5137 5 6 3.3386 1.2639 0.7104 6 8 3.7897 0.2046 1.0915 7 7 4.0254 2.4040 0.9224 8 6 5.3165 2.3637 1.6134 9 6 5.8811 3.7815 1.7226 10 6 7.2089 3.7401 2.4340 11 6 8.2793 3.6879 1.7077 12 6 9.6694 3.6228 2.2761 13 7 9.6134 3.8927 3.7201 14 6 10.5330 4.7034 4.3300 15 1 10.2851 5.1998 5.2565 16 6 11.7842 4.8873 3.7574 17 7 12.2021 4.0711 2.8131 18 14 12.8745 6.2931 4.3267 19 1 12.1784 7.0596 5.3912 20 1 14.1472 5.7468 4.8623 21 1 13.1648 7.1903 3.1795 22 6 8.5305 3.2500 4.4851 23 6 7.1972 3.7619 3.9335 24 6 2.2177 1.7713 -1.4426 25 1 2.8908 1.0977 -1.9728 26 6 0.8590 1.8926 -2.1850 27 6 1.1939 2.9918 -3.2282 28 8 2.0797 3.8979 -2.5516 29 6 2.7480 3.2207 -1.4810 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.6648 3.2513 0.6174 34 1 6.0104 1.7390 1.0509 35 1 5.1813 1.9483 2.6120 36 1 5.1874 4.4066 2.2849 37 1 6.0164 4.1966 0.7239 38 1 8.1672 3.6917 0.6335 39 1 10.2970 4.3696 1.7900 40 1 10.0868 2.6302 2.1071 41 1 13.0761 4.1998 2.4128 42 1 8.5876 2.1679 4.3670 43 1 8.6182 3.5117 5.5396 44 1 7.0327 4.7828 4.2780 45 1 6.3912 3.1245 4.2970 46 1 0.5915 0.9540 -2.6706 47 1 0.0699 2.2218 -1.5089 48 1 0.2865 3.5102 -3.5378 49 1 1.6911 2.5516 -4.0926 50 1 2.5315 3.7189 -0.5360 51 1 3.8235 3.2163 -1.6586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160792419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:16 Heat of formation + Delta-G solvation = -83.652228 kcal Electronic energy + Delta-G solvation = -29816.584630 eV Core-core repulsion = 25717.306417 eV Total energy + Delta-G solvation = -4099.278213 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.94768 -39.29184 -38.12068 -37.67522 -35.47236 -33.85055 -33.07839 -31.47151 -30.61834 -29.79373 -28.68597 -28.01984 -26.07811 -25.09743 -23.42485 -22.82900 -22.41899 -21.59622 -21.09004 -20.61016 -18.02421 -17.59022 -17.37239 -17.09185 -16.55192 -16.02244 -15.59509 -15.49807 -15.29517 -15.07025 -14.95909 -14.71903 -14.12721 -14.02500 -13.92305 -13.65108 -13.46033 -13.32761 -12.91657 -12.66405 -12.37983 -12.26475 -12.14774 -11.99473 -11.87939 -11.57900 -11.50712 -11.49695 -11.40825 -11.00792 -10.90200 -10.72969 -10.38539 -10.27049 -10.23409 -10.04766 -9.80962 -9.76317 -9.51552 -9.21738 -8.64446 -7.91380 -6.70819 -5.76968 -3.15872 2.33321 2.50980 2.96669 3.25575 3.38695 3.46122 3.48338 3.50775 3.90396 4.01192 4.29799 4.36212 4.50606 4.51205 4.55822 4.67301 4.80548 4.88488 4.98115 5.09463 5.11400 5.15356 5.18874 5.23547 5.26636 5.27426 5.33735 5.41594 5.51830 5.56287 5.64445 5.78953 5.99994 6.03270 6.14907 6.21053 6.26480 6.41318 6.43480 6.53716 6.57106 6.80567 6.92463 7.23409 7.25816 7.35125 7.42666 7.77210 7.89945 7.99189 8.41042 9.22534 9.85320 10.44072 11.33347 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021427 B = 0.002050 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.458065 B =13652.360935 C =14427.980591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.352 6.352 3 C 0.085 3.915 4 H 0.089 0.911 5 C 0.509 3.491 6 O -0.512 6.512 7 N -0.730 5.730 8 C 0.124 3.876 9 C -0.092 4.092 10 C -0.143 4.143 11 C -0.145 4.145 12 C 0.196 3.804 13 N -0.596 5.596 14 C -0.244 4.244 15 H 0.069 0.931 16 C -0.003 4.003 17 N -0.909 5.909 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.289 1.289 22 C 0.143 3.857 23 C -0.091 4.091 24 C -0.143 4.143 25 H 0.103 0.897 26 C -0.151 4.151 27 C 0.050 3.950 28 O -0.377 6.377 29 C 0.053 3.947 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.397 0.603 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.038 0.962 41 H 0.253 0.747 42 H 0.023 0.977 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.064 0.936 50 H 0.070 0.930 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.308 -3.107 -10.698 29.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.269 6.269 3 C 0.023 3.977 4 H 0.107 0.893 5 C 0.293 3.707 6 O -0.386 6.386 7 N -0.387 5.387 8 C 0.001 3.999 9 C -0.130 4.130 10 C -0.144 4.144 11 C -0.165 4.165 12 C 0.071 3.929 13 N -0.319 5.319 14 C -0.373 4.373 15 H 0.086 0.914 16 C -0.201 4.201 17 N -0.555 5.555 18 Si 0.734 3.266 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.216 1.216 22 C 0.016 3.984 23 C -0.130 4.130 24 C -0.162 4.162 25 H 0.121 0.879 26 C -0.189 4.189 27 C -0.026 4.026 28 O -0.297 6.297 29 C -0.024 4.024 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.234 0.766 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.110 0.890 47 H 0.100 0.900 48 H 0.107 0.893 49 H 0.082 0.918 50 H 0.088 0.912 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -26.656 -3.838 -10.524 28.914 hybrid contribution 0.181 1.065 0.041 1.081 sum -26.476 -2.774 -10.484 28.610 Atomic orbital electron populations 1.23125 0.80599 1.03621 1.00531 1.88076 1.19731 1.24380 1.94714 1.21887 0.94120 0.87313 0.94375 0.89302 1.20255 0.85979 0.84422 0.80025 1.90759 1.68781 1.29609 1.49420 1.46349 1.22647 1.09164 1.60522 1.21496 0.82782 0.98133 0.97486 1.20916 0.96624 0.94908 1.00531 1.20204 0.92638 1.06038 0.95482 1.23126 0.97633 0.97395 0.98310 1.19704 0.89044 1.00142 0.83979 1.44153 1.30396 1.54647 1.02714 1.19226 0.91913 1.19011 1.07173 0.91355 1.25005 0.96383 0.98931 0.99754 1.70026 1.19336 1.36383 1.29738 0.86183 0.80381 0.82059 0.77939 1.20334 1.21777 1.21624 1.20960 0.87460 0.94846 0.95140 1.20755 0.99324 1.00703 0.92214 1.23258 0.98855 0.97955 0.96168 0.87885 1.23504 0.96630 1.00386 0.98362 1.23466 0.93820 0.90365 0.94977 1.88453 1.58967 1.35692 1.46545 1.23302 0.97871 0.90272 0.90957 0.88964 0.93722 0.93028 0.76597 0.91033 0.91056 0.91428 0.91448 0.89044 0.89157 0.94396 0.93691 0.95877 0.92552 0.91915 0.92890 0.89006 0.89972 0.89344 0.91770 0.91200 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.55 101.05 1.07 1.17 16 2 O -0.35 -3.59 9.84 -55.09 -0.54 -4.13 16 3 C 0.09 0.73 2.19 -27.88 -0.06 0.67 16 4 H 0.09 0.55 7.76 -51.93 -0.40 0.15 16 5 C 0.51 6.15 7.14 -10.99 -0.08 6.07 16 6 O -0.51 -8.72 16.51 -14.30 -0.24 -8.96 16 7 N -0.73 -7.43 5.09 -60.30 -0.31 -7.74 16 8 C 0.12 1.56 5.66 -4.05 -0.02 1.54 16 9 C -0.09 -1.16 5.32 -27.88 -0.15 -1.31 16 10 C -0.14 -2.43 5.11 -100.99 -0.52 -2.95 16 11 C -0.15 -2.80 9.47 -35.78 -0.34 -3.14 16 12 C 0.20 4.75 5.22 -5.10 -0.03 4.72 16 13 N -0.60 -15.17 3.01 -173.68 -0.52 -15.69 16 14 C -0.24 -6.75 9.71 -15.06 -0.15 -6.90 16 15 H 0.07 1.85 7.87 -52.49 -0.41 1.44 16 16 C 0.00 -0.08 5.01 -17.43 -0.09 -0.17 16 17 N -0.91 -26.52 11.07 55.49 0.61 -25.91 16 18 Si 0.90 21.86 29.58 -169.99 -5.03 16.83 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 C 0.14 3.03 6.58 -3.53 -0.02 3.00 16 23 C -0.09 -1.60 5.94 -28.19 -0.17 -1.77 16 24 C -0.14 -1.02 2.75 -88.67 -0.24 -1.26 16 25 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 26 C -0.15 -0.76 4.81 -24.34 -0.12 -0.87 16 27 C 0.05 0.29 7.78 38.32 0.30 0.59 16 28 O -0.38 -3.26 11.36 -35.23 -0.40 -3.66 16 29 C 0.05 0.38 5.76 37.88 0.22 0.60 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.22 8.08 -51.93 -0.42 -0.20 16 32 H 0.05 0.20 4.89 -51.93 -0.25 -0.05 16 33 H 0.40 2.95 5.38 -40.82 -0.22 2.73 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 36 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 37 H 0.07 0.78 7.78 -51.93 -0.40 0.38 16 38 H 0.09 1.56 7.73 -52.48 -0.41 1.15 16 39 H 0.09 2.42 6.42 -51.93 -0.33 2.08 16 40 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 46 H 0.09 0.39 7.79 -51.93 -0.40 -0.02 16 47 H 0.08 0.33 7.01 -51.93 -0.36 -0.04 16 48 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.07 0.40 6.00 -51.93 -0.31 0.09 16 51 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 397.33 15.07 5.99 5.99 Total: -1.00 -34.33 397.33 -9.38 -43.71 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -8.55 Total: -0.44 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -0.39 Total: 0.01 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.22 Total: -49.34 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -1.18 Total: -16.75 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.33 -9.38 -43.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160792419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.945 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds