Wall clock time and date at job start Tue Mar 31 2020 21:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00373 * 2 1 4 4 H 1.08998 * 109.46533 * 29.99410 * 3 2 1 5 5 C 1.50696 * 109.47452 * 149.99991 * 3 2 1 6 6 O 1.21278 * 120.00264 * 4.99520 * 5 3 2 7 7 N 1.34778 * 119.99989 * 185.00325 * 5 3 2 8 8 C 1.46496 * 120.00139 * 179.97438 * 7 5 3 9 9 C 1.52996 * 109.47266 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47219 * 179.97438 * 9 8 7 11 11 C 1.29456 * 117.69227 * 94.99861 * 10 9 8 12 12 C 1.50327 * 123.65271 * 180.87849 * 11 10 9 13 13 N 1.47002 * 109.16306 * 349.02542 * 12 11 10 14 14 C 1.36930 * 121.37735 * 222.67320 * 13 12 11 15 15 H 1.07998 * 120.00553 * 156.01063 * 14 13 12 16 16 C 1.38819 * 119.99807 * 336.00745 * 14 13 12 17 17 N 1.31619 * 119.99874 * 344.69195 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 164.68264 * 16 14 13 19 19 H 1.48504 * 109.47009 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46886 * 120.00122 * 18 16 14 21 21 H 1.48494 * 109.47333 * 240.00392 * 18 16 14 22 22 C 1.47343 * 117.25228 * 42.94309 * 13 12 11 23 23 C 1.49966 * 117.69559 * 275.01860 * 10 9 8 24 24 C 1.53007 * 109.46816 * 269.99934 * 3 2 1 25 25 H 1.08994 * 110.74753 * 299.29712 * 24 3 2 26 26 C 1.55306 * 110.84667 * 62.77069 * 24 3 2 27 27 C 1.55200 * 100.82740 * 152.17605 * 26 24 3 28 28 O 1.43649 * 105.26159 * 323.81883 * 27 26 24 29 29 C 1.43233 * 109.97024 * 24.27792 * 28 27 26 30 30 H 1.08999 * 109.46867 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47357 * 300.00198 * 1 2 3 32 32 H 1.08997 * 109.47208 * 60.00370 * 1 2 3 33 33 H 0.96999 * 119.99857 * 359.97438 * 7 5 3 34 34 H 1.09002 * 109.46919 * 59.99538 * 8 7 5 35 35 H 1.08998 * 109.46983 * 299.99860 * 8 7 5 36 36 H 1.09002 * 109.47400 * 59.99990 * 9 8 7 37 37 H 1.08998 * 109.47134 * 299.99925 * 9 8 7 38 38 H 1.08003 * 118.17099 * 0.90692 * 11 10 9 39 39 H 1.08994 * 109.52218 * 229.11926 * 12 11 10 40 40 H 1.08998 * 109.56920 * 108.95900 * 12 11 10 41 41 H 0.96996 * 119.99854 * 179.97438 * 17 16 14 42 42 H 1.09006 * 109.77328 * 57.81270 * 22 13 12 43 43 H 1.09000 * 109.78403 * 178.61566 * 22 13 12 44 44 H 1.08991 * 109.31604 * 281.26858 * 23 10 9 45 45 H 1.09000 * 109.31245 * 40.88523 * 23 10 9 46 46 H 1.09007 * 111.12470 * 270.23885 * 26 24 3 47 47 H 1.09005 * 111.12872 * 34.39970 * 26 24 3 48 48 H 1.08994 * 110.37386 * 204.79437 * 27 26 24 49 49 H 1.09002 * 110.20859 * 82.74849 * 27 26 24 50 50 H 1.08999 * 109.83017 * 238.77775 * 29 28 27 51 51 H 1.09003 * 109.90249 * 117.85060 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5137 5 6 3.3386 1.2639 0.7104 6 8 3.7897 0.2046 1.0915 7 7 4.0254 2.4040 0.9224 8 6 5.3165 2.3637 1.6134 9 6 5.8811 3.7815 1.7226 10 6 7.2089 3.7401 2.4340 11 6 8.2793 3.6879 1.7077 12 6 9.6694 3.6228 2.2761 13 7 9.6134 3.8927 3.7201 14 6 10.5330 4.7034 4.3300 15 1 10.2851 5.1998 5.2565 16 6 11.7842 4.8873 3.7574 17 7 12.2021 4.0711 2.8131 18 14 12.8745 6.2931 4.3267 19 1 12.1784 7.0596 5.3912 20 1 14.1472 5.7468 4.8623 21 1 13.1648 7.1903 3.1795 22 6 8.5305 3.2500 4.4851 23 6 7.1972 3.7619 3.9335 24 6 2.2177 1.7713 -1.4426 25 1 2.8908 1.0977 -1.9728 26 6 0.8590 1.8926 -2.1850 27 6 1.1939 2.9918 -3.2282 28 8 2.0797 3.8979 -2.5516 29 6 2.7480 3.2207 -1.4810 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.6648 3.2513 0.6174 34 1 6.0104 1.7390 1.0509 35 1 5.1813 1.9483 2.6120 36 1 5.1874 4.4066 2.2849 37 1 6.0164 4.1966 0.7239 38 1 8.1672 3.6917 0.6335 39 1 10.2970 4.3696 1.7900 40 1 10.0868 2.6302 2.1071 41 1 13.0761 4.1998 2.4128 42 1 8.5876 2.1679 4.3670 43 1 8.6182 3.5117 5.5396 44 1 7.0327 4.7828 4.2780 45 1 6.3912 3.1245 4.2970 46 1 0.5915 0.9540 -2.6706 47 1 0.0699 2.2218 -1.5089 48 1 0.2865 3.5102 -3.5378 49 1 1.6911 2.5516 -4.0926 50 1 2.5315 3.7189 -0.5360 51 1 3.8235 3.2163 -1.6586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160792419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:15 Heat of formation + Delta-G solvation = -106.790322 kcal Electronic energy + Delta-G solvation = -29817.587973 eV Core-core repulsion = 25717.306417 eV Total energy + Delta-G solvation = -4100.281556 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.66462 -40.06184 -39.46854 -38.53246 -36.75433 -35.25959 -33.91519 -33.07316 -31.56948 -31.22182 -29.96124 -28.61327 -27.26214 -26.26213 -24.72985 -24.11995 -23.36029 -22.52202 -22.18497 -21.63029 -19.46627 -18.71396 -18.08331 -17.72700 -17.54738 -17.13386 -17.01528 -16.48052 -16.30810 -16.07138 -15.76024 -15.60723 -15.44370 -15.41231 -15.12959 -14.87223 -14.59956 -14.30081 -14.05147 -13.88169 -13.45649 -13.37268 -13.21593 -12.94455 -12.82093 -12.81108 -12.75925 -12.60531 -12.36752 -12.32344 -12.13189 -12.02263 -11.93591 -11.88785 -11.67162 -11.25585 -11.04563 -10.69814 -10.57618 -10.50439 -10.19551 -9.48750 -8.75741 -7.88346 -5.30871 1.38565 1.43748 1.46144 1.46990 1.58150 1.83893 2.50640 2.73760 2.95850 3.28003 3.30872 3.46046 3.66309 3.73974 3.82928 3.93437 3.96529 4.07292 4.09687 4.16861 4.24438 4.28884 4.35358 4.49455 4.55299 4.57895 4.58792 4.64291 4.68678 4.79711 4.84995 4.86629 4.87041 4.90751 4.92065 4.97156 5.06535 5.08623 5.17599 5.23921 5.31744 5.41913 5.50624 5.60875 5.88008 5.95673 5.98208 6.28429 6.33428 6.45145 7.12069 7.12776 7.82803 8.37783 9.20315 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021427 B = 0.002050 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.458065 B =13652.360935 C =14427.980591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.386 6.386 3 C 0.092 3.908 4 H 0.121 0.879 5 C 0.505 3.495 6 O -0.570 6.570 7 N -0.713 5.713 8 C 0.131 3.869 9 C -0.080 4.080 10 C -0.119 4.119 11 C -0.174 4.174 12 C 0.207 3.793 13 N -0.616 5.616 14 C -0.256 4.256 15 H 0.072 0.928 16 C -0.059 4.059 17 N -0.942 5.942 18 Si 0.972 3.028 19 H -0.265 1.265 20 H -0.293 1.293 21 H -0.290 1.290 22 C 0.134 3.866 23 C -0.087 4.087 24 C -0.140 4.140 25 H 0.084 0.916 26 C -0.143 4.143 27 C 0.044 3.956 28 O -0.399 6.399 29 C 0.050 3.950 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.414 0.586 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.055 0.945 40 H 0.001 0.999 41 H 0.249 0.751 42 H 0.016 0.984 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.100 0.900 47 H 0.100 0.900 48 H 0.105 0.895 49 H 0.062 0.938 50 H 0.089 0.911 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.857 -1.450 -10.691 32.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.305 6.305 3 C 0.031 3.969 4 H 0.138 0.862 5 C 0.291 3.709 6 O -0.448 6.448 7 N -0.370 5.370 8 C 0.007 3.993 9 C -0.117 4.117 10 C -0.120 4.120 11 C -0.194 4.194 12 C 0.082 3.918 13 N -0.340 5.340 14 C -0.386 4.386 15 H 0.090 0.910 16 C -0.253 4.253 17 N -0.589 5.589 18 Si 0.800 3.200 19 H -0.189 1.189 20 H -0.220 1.220 21 H -0.217 1.217 22 C 0.009 3.991 23 C -0.125 4.125 24 C -0.159 4.159 25 H 0.103 0.897 26 C -0.180 4.180 27 C -0.032 4.032 28 O -0.319 6.319 29 C -0.026 4.026 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.254 0.746 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.131 0.869 39 H 0.073 0.927 40 H 0.019 0.981 41 H 0.058 0.942 42 H 0.034 0.966 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.123 0.877 49 H 0.081 0.919 50 H 0.106 0.894 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -30.261 -2.146 -10.521 32.109 hybrid contribution 1.218 0.479 0.087 1.312 sum -29.042 -1.667 -10.434 30.905 Atomic orbital electron populations 1.23354 0.78508 1.04544 1.02118 1.88040 1.22111 1.25382 1.94927 1.21897 0.92435 0.87670 0.94897 0.86156 1.21003 0.87020 0.83709 0.79154 1.90734 1.70407 1.31682 1.51942 1.46138 1.21545 1.09727 1.59555 1.21224 0.83527 0.97636 0.96910 1.20821 0.94252 0.95260 1.01383 1.20562 0.94218 1.01783 0.95458 1.22822 0.95426 1.01487 0.99635 1.19343 0.91700 0.97027 0.83775 1.44453 1.31036 1.54946 1.03530 1.19580 0.92508 1.19184 1.07284 0.91023 1.25826 0.97907 1.01321 1.00274 1.70206 1.19512 1.38086 1.31126 0.85133 0.78266 0.79022 0.77606 1.18888 1.22024 1.21662 1.21165 0.88305 0.94340 0.95286 1.20717 0.97766 1.01580 0.92478 1.23165 0.99995 0.97503 0.95261 0.89737 1.23507 0.95711 1.00620 0.98150 1.23637 0.94069 0.90496 0.94988 1.88429 1.59592 1.36794 1.47079 1.23345 0.97438 0.90298 0.91549 0.88591 0.92621 0.90831 0.74604 0.93166 0.92013 0.88575 0.89696 0.86902 0.92708 0.98138 0.94169 0.96626 0.92215 0.91120 0.89540 0.88125 0.88131 0.87673 0.91926 0.89362 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 10.55 113.37 1.20 1.29 16 2 O -0.39 -7.29 9.84 -129.99 -1.28 -8.57 16 3 C 0.09 1.38 2.19 29.85 0.07 1.45 16 4 H 0.12 1.01 7.76 -2.39 -0.02 0.99 16 5 C 0.51 11.55 7.14 87.66 0.63 12.18 16 6 O -0.57 -19.54 16.51 15.96 0.26 -19.28 16 7 N -0.71 -12.82 5.09 -463.08 -2.36 -15.18 16 8 C 0.13 3.04 5.66 86.38 0.49 3.53 16 9 C -0.08 -1.73 5.32 29.85 0.16 -1.57 16 10 C -0.12 -3.84 5.11 -15.14 -0.08 -3.92 16 11 C -0.17 -6.73 9.47 27.11 0.26 -6.48 16 12 C 0.21 10.50 5.22 85.42 0.45 10.94 16 13 N -0.62 -32.12 3.01 -703.39 -2.12 -34.24 16 14 C -0.26 -14.41 9.71 84.04 0.82 -13.60 16 15 H 0.07 3.90 7.87 -2.91 -0.02 3.87 16 16 C -0.06 -3.37 5.01 84.86 0.43 -2.94 16 17 N -0.94 -57.32 11.07 21.65 0.24 -57.08 16 18 Si 0.97 45.75 29.58 68.60 2.03 47.78 16 19 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 C 0.13 5.70 6.58 86.25 0.57 6.26 16 23 C -0.09 -2.85 5.94 29.65 0.18 -2.68 16 24 C -0.14 -1.70 2.75 -9.53 -0.03 -1.73 16 25 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 26 C -0.14 -0.99 4.81 32.14 0.15 -0.83 16 27 C 0.04 0.40 7.78 72.74 0.57 0.97 16 28 O -0.40 -5.95 11.36 -148.98 -1.69 -7.64 16 29 C 0.05 0.60 5.76 72.45 0.42 1.02 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.39 8.08 -2.39 -0.02 0.37 16 32 H 0.07 0.32 4.89 -2.39 -0.01 0.31 16 33 H 0.41 4.65 5.38 -92.71 -0.50 4.15 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.59 8.08 -2.39 -0.02 1.57 16 36 H 0.10 1.65 8.11 -2.39 -0.02 1.63 16 37 H 0.08 1.64 7.78 -2.39 -0.02 1.62 16 38 H 0.11 3.80 7.73 -2.91 -0.02 3.78 16 39 H 0.05 3.11 6.42 -2.39 -0.02 3.10 16 40 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.06 2.44 7.96 -2.39 -0.02 2.42 16 44 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 45 H 0.09 2.32 8.08 -2.39 -0.02 2.30 16 46 H 0.10 0.55 7.79 -2.38 -0.02 0.53 16 47 H 0.10 0.35 7.01 -2.38 -0.02 0.34 16 48 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.09 0.68 6.00 -2.39 -0.01 0.67 16 51 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -79.05 397.33 1.76 -77.29 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.42 Total: 13.02 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 6.26 Total: 3.89 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -4.23 Total: -106.50 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -2.71 Total: -35.49 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -79.05 1.76 -77.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160792419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.502 kcal (2) G-P(sol) polarization free energy of solvation -79.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds