Wall clock time and date at job start Tue Mar 31 2020 21:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42905 * 114.00300 * 2 1 4 4 C 1.52996 * 109.47310 * 179.97438 * 3 2 1 5 5 C 1.50699 * 110.45768 * 300.69682 * 4 3 2 6 6 O 1.21282 * 120.00770 * 237.39695 * 5 4 3 7 7 N 1.34787 * 119.99515 * 57.39954 * 5 4 3 8 8 C 1.46503 * 119.99663 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.46770 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47087 * 179.97438 * 9 8 7 11 11 C 1.29455 * 117.69231 * 95.02329 * 10 9 8 12 12 C 1.50326 * 123.65079 * 180.83831 * 11 10 9 13 13 N 1.47005 * 109.16565 * 349.01878 * 12 11 10 14 14 C 1.36930 * 121.37674 * 222.96728 * 13 12 11 15 15 H 1.07996 * 120.00341 * 155.96632 * 14 13 12 16 16 C 1.38820 * 120.00037 * 335.97332 * 14 13 12 17 17 N 1.31620 * 119.99795 * 344.51829 * 16 14 13 18 18 Si 1.86797 * 119.99844 * 164.52067 * 16 14 13 19 19 H 1.48504 * 109.47420 * 60.00096 * 18 16 14 20 20 H 1.48505 * 109.47016 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47400 * 299.99916 * 18 16 14 22 22 C 1.47341 * 117.24811 * 42.95111 * 13 12 11 23 23 C 1.49970 * 117.69848 * 275.00387 * 10 9 8 24 24 C 1.54515 * 110.51029 * 178.09942 * 4 3 2 25 25 C 1.54486 * 104.05833 * 241.21668 * 24 4 3 26 26 O 1.44422 * 104.80333 * 23.97606 * 25 24 4 27 27 C 1.44421 * 105.27604 * 319.49022 * 26 25 24 28 28 H 1.08997 * 109.47397 * 299.99887 * 1 2 3 29 29 H 1.09008 * 109.46926 * 60.00417 * 1 2 3 30 30 H 1.08999 * 109.47241 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46540 * 59.99814 * 3 2 1 32 32 H 1.08993 * 109.47024 * 299.99930 * 3 2 1 33 33 H 0.96992 * 119.99822 * 359.97438 * 7 5 4 34 34 H 1.08997 * 109.47124 * 60.00076 * 8 7 5 35 35 H 1.09004 * 109.47130 * 299.99871 * 8 7 5 36 36 H 1.08997 * 109.47103 * 60.00224 * 9 8 7 37 37 H 1.09004 * 109.47320 * 299.99916 * 9 8 7 38 38 H 1.08003 * 118.17817 * 0.85542 * 11 10 9 39 39 H 1.09000 * 109.51983 * 229.11331 * 12 11 10 40 40 H 1.09004 * 109.52141 * 108.93033 * 12 11 10 41 41 H 0.96996 * 119.99626 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.78047 * 57.80861 * 22 13 12 43 43 H 1.08999 * 109.77790 * 178.62053 * 22 13 12 44 44 H 1.08996 * 109.31137 * 40.73484 * 23 10 9 45 45 H 1.09002 * 109.15670 * 281.21472 * 23 10 9 46 46 H 1.08994 * 110.50778 * 359.85890 * 24 4 3 47 47 H 1.08997 * 110.51257 * 122.57353 * 24 4 3 48 48 H 1.08999 * 110.36716 * 142.80936 * 25 24 4 49 49 H 1.08998 * 110.36762 * 265.14321 * 25 24 4 50 50 H 1.09003 * 110.37126 * 281.67800 * 27 26 25 51 51 H 1.08999 * 110.37142 * 159.34679 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0031 0.4247 1.2151 6 8 4.7878 0.9361 1.9856 7 7 3.5492 -0.8234 1.4450 8 6 4.0042 -1.5624 2.6253 9 6 3.3426 -2.9418 2.6497 10 6 3.8112 -3.7022 3.8634 11 6 3.0714 -3.6561 4.9248 12 6 3.4192 -4.3481 6.2132 13 7 4.5467 -5.2622 5.9810 14 6 4.5641 -6.5230 6.5150 15 1 5.1587 -7.2971 6.0529 16 6 3.8173 -6.8062 7.6505 17 7 3.3426 -5.8246 8.3877 18 14 3.4861 -8.5804 8.1320 19 1 4.7756 -9.2784 8.3674 20 1 2.6725 -8.6126 9.3739 21 1 2.7476 -9.2607 7.0380 22 6 5.6573 -4.7660 5.1496 23 6 5.1012 -4.4595 3.7565 24 6 4.1894 2.5838 -0.0473 25 6 4.9990 2.5746 -1.3630 26 8 4.3521 1.5810 -2.1875 27 6 4.0273 0.4958 -1.2915 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6885 1.8463 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 2.9214 -1.2323 0.8290 34 1 3.7307 -1.0127 3.5259 35 1 5.0873 -1.6792 2.5857 36 1 3.6158 -3.4917 1.7491 37 1 2.2596 -2.8247 2.6895 38 1 2.1532 -3.0891 4.8823 39 1 2.5576 -4.9148 6.5663 40 1 3.6996 -3.6062 6.9610 41 1 2.8205 -6.0225 9.1808 42 1 6.0706 -3.8584 5.5896 43 1 6.4332 -5.5281 5.0775 44 1 5.8251 -3.8619 3.2027 45 1 4.9240 -5.3947 3.2253 46 1 3.4260 3.3613 -0.0740 47 1 4.8509 2.7257 0.8072 48 1 4.9550 3.5526 -1.8423 49 1 6.0338 2.2920 -1.1696 50 1 4.9132 -0.1056 -1.0873 51 1 3.2370 -0.1232 -1.7160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160792625.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:23 Heat of formation + Delta-G solvation = -92.161464 kcal Electronic energy + Delta-G solvation = -30101.842685 eV Core-core repulsion = 26002.195484 eV Total energy + Delta-G solvation = -4099.647201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.06772 -38.77545 -38.04640 -37.82543 -35.40567 -33.63226 -33.25802 -31.36544 -30.15837 -29.74691 -28.53956 -27.49792 -25.77495 -25.43114 -23.54017 -23.00649 -22.64658 -21.93414 -20.91433 -19.78154 -17.90377 -17.57276 -17.03876 -16.68365 -16.29350 -16.06463 -15.75057 -15.50507 -15.30284 -15.24004 -14.88839 -14.79940 -14.03167 -13.94475 -13.60303 -13.45440 -13.36433 -13.23490 -12.73443 -12.59661 -12.43626 -12.16724 -12.03505 -11.93546 -11.70609 -11.67327 -11.54148 -11.38663 -11.18133 -10.95918 -10.87584 -10.70903 -10.33111 -10.29411 -10.23076 -10.16103 -9.85678 -9.77960 -9.50749 -9.05625 -8.62852 -7.88885 -6.70111 -5.76362 -3.14994 2.41298 2.82627 3.08712 3.19570 3.40212 3.45504 3.46871 3.61012 3.96002 4.31963 4.39611 4.51702 4.60965 4.70008 4.78271 4.87667 4.95146 4.99535 5.13054 5.15880 5.23143 5.26365 5.29504 5.33371 5.36086 5.37021 5.42204 5.52221 5.59952 5.63653 5.68011 5.84033 6.05570 6.09465 6.19671 6.25139 6.31322 6.42770 6.45144 6.56791 6.58739 6.82145 6.93580 7.26640 7.35488 7.43525 7.48897 7.77247 7.91461 8.13261 8.41785 9.23157 9.86072 10.44979 11.34022 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.002126 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.386918 B =13167.716780 C =13679.890988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.395 6.395 3 C 0.080 3.920 4 C -0.112 4.112 5 C 0.526 3.474 6 O -0.540 6.540 7 N -0.713 5.713 8 C 0.123 3.877 9 C -0.090 4.090 10 C -0.141 4.141 11 C -0.147 4.147 12 C 0.197 3.803 13 N -0.595 5.595 14 C -0.245 4.245 15 H 0.068 0.932 16 C -0.002 4.002 17 N -0.910 5.910 18 Si 0.905 3.095 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.143 3.857 23 C -0.091 4.091 24 C -0.141 4.141 25 C 0.045 3.955 26 O -0.371 6.371 27 C 0.063 3.937 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.408 0.592 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.038 0.962 41 H 0.254 0.746 42 H 0.023 0.977 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.082 0.918 47 H 0.108 0.892 48 H 0.096 0.904 49 H 0.065 0.935 50 H 0.066 0.934 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.226 16.685 -21.274 27.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.314 6.314 3 C 0.003 3.997 4 C -0.116 4.116 5 C 0.310 3.690 6 O -0.417 6.417 7 N -0.366 5.366 8 C 0.000 4.000 9 C -0.128 4.128 10 C -0.142 4.142 11 C -0.167 4.167 12 C 0.072 3.928 13 N -0.319 5.319 14 C -0.374 4.374 15 H 0.085 0.915 16 C -0.200 4.200 17 N -0.555 5.555 18 Si 0.735 3.265 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.211 1.211 22 C 0.017 3.983 23 C -0.130 4.130 24 C -0.179 4.179 25 C -0.032 4.032 26 O -0.289 6.289 27 C -0.014 4.014 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.246 0.754 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.101 0.899 47 H 0.126 0.874 48 H 0.114 0.886 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.696 16.836 -20.766 26.988 hybrid contribution -0.864 -0.815 0.309 1.227 sum -4.560 16.021 -20.457 26.381 Atomic orbital electron populations 1.22773 0.79812 1.03357 1.00242 1.87660 1.20706 1.27560 1.95456 1.22470 0.90343 0.85339 1.01560 1.22235 0.95808 0.97679 0.95891 1.19952 0.80967 0.81910 0.86153 1.90695 1.34911 1.68320 1.47819 1.46186 1.47368 1.15336 1.27748 1.21453 0.99468 0.91673 0.87416 1.20886 0.99859 0.93716 0.98317 1.20239 0.98447 1.01189 0.94351 1.23111 0.97670 0.98608 0.97315 1.19698 0.92154 0.91712 0.89242 1.44124 1.16085 1.13347 1.58315 1.19144 1.26895 0.85922 1.05485 0.91460 1.24993 1.02033 0.97391 0.95598 1.70012 1.39655 1.29874 1.15981 0.86323 0.78023 0.84707 0.77445 1.20944 1.21658 1.21130 1.20951 0.90840 0.97034 0.89513 1.20766 0.94062 0.98302 0.99903 1.23004 1.00603 0.93779 1.00537 1.23481 0.96433 0.93247 0.90057 1.89140 1.78624 1.29256 1.31903 1.23401 1.00602 0.90122 0.87261 0.93762 0.93774 0.89068 0.92302 0.91423 0.75416 0.91420 0.91342 0.91509 0.91534 0.89137 0.89192 0.94484 0.93607 0.95887 0.92561 0.92873 0.91935 0.89921 0.87407 0.88582 0.91720 0.91553 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.03 7.52 -35.23 -0.26 -3.30 16 3 C 0.08 0.60 4.63 37.16 0.17 0.77 16 4 C -0.11 -1.02 0.76 -154.10 -0.12 -1.13 16 5 C 0.53 6.45 6.41 -10.98 -0.07 6.38 16 6 O -0.54 -8.58 15.28 5.56 0.08 -8.49 16 7 N -0.71 -8.18 5.23 -60.29 -0.32 -8.50 16 8 C 0.12 1.65 5.66 -4.04 -0.02 1.63 16 9 C -0.09 -1.21 5.32 -27.88 -0.15 -1.36 16 10 C -0.14 -2.47 5.11 -100.99 -0.52 -2.99 16 11 C -0.15 -2.89 9.47 -35.78 -0.34 -3.23 16 12 C 0.20 4.80 5.23 -5.10 -0.03 4.77 16 13 N -0.60 -15.25 3.01 -173.67 -0.52 -15.78 16 14 C -0.24 -6.81 9.71 -15.06 -0.15 -6.96 16 15 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 16 C 0.00 -0.07 5.01 -17.43 -0.09 -0.15 16 17 N -0.91 -26.57 11.08 55.49 0.61 -25.96 16 18 Si 0.90 21.89 29.58 -169.99 -5.03 16.86 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.14 3.07 6.58 -3.53 -0.02 3.05 16 23 C -0.09 -1.64 5.95 -28.18 -0.17 -1.80 16 24 C -0.14 -1.15 6.32 -25.16 -0.16 -1.31 16 25 C 0.04 0.34 7.63 37.94 0.29 0.63 16 26 O -0.37 -3.53 11.65 -35.23 -0.41 -3.94 16 27 C 0.06 0.55 6.64 37.93 0.25 0.80 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.04 0.20 8.14 -51.92 -0.42 -0.23 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.41 4.02 6.30 -40.82 -0.26 3.76 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 36 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 37 H 0.07 0.84 7.78 -51.93 -0.40 0.44 16 38 H 0.09 1.58 7.73 -52.48 -0.41 1.17 16 39 H 0.09 2.42 6.41 -51.93 -0.33 2.09 16 40 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 44 H 0.05 0.83 8.08 -51.93 -0.42 0.41 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.08 0.52 7.73 -51.93 -0.40 0.12 16 47 H 0.11 1.06 6.50 -51.93 -0.34 0.73 16 48 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.61 7.86 -51.93 -0.41 0.20 16 51 H 0.11 0.83 7.42 -51.93 -0.39 0.44 16 LS Contribution 401.82 15.07 6.06 6.06 Total: -1.00 -32.42 401.82 -8.59 -41.01 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.81 Total: 1.65 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 0.00 Total: 0.40 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.22 Total: -50.23 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.59 Total: -15.73 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.42 -8.59 -41.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160792625.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.154 kcal (2) G-P(sol) polarization free energy of solvation -32.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds