Wall clock time and date at job start Tue Mar 31 2020 21:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42905 * 114.00300 * 2 1 4 4 C 1.52996 * 109.47310 * 179.97438 * 3 2 1 5 5 C 1.50699 * 110.45768 * 300.69682 * 4 3 2 6 6 O 1.21282 * 120.00770 * 237.39695 * 5 4 3 7 7 N 1.34787 * 119.99515 * 57.39954 * 5 4 3 8 8 C 1.46503 * 119.99663 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.46770 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47087 * 179.97438 * 9 8 7 11 11 C 1.29455 * 117.69231 * 95.02329 * 10 9 8 12 12 C 1.50326 * 123.65079 * 180.83831 * 11 10 9 13 13 N 1.47005 * 109.16565 * 349.01878 * 12 11 10 14 14 C 1.36930 * 121.37674 * 222.96728 * 13 12 11 15 15 H 1.07996 * 120.00341 * 155.96632 * 14 13 12 16 16 C 1.38820 * 120.00037 * 335.97332 * 14 13 12 17 17 N 1.31620 * 119.99795 * 344.51829 * 16 14 13 18 18 Si 1.86797 * 119.99844 * 164.52067 * 16 14 13 19 19 H 1.48504 * 109.47420 * 60.00096 * 18 16 14 20 20 H 1.48505 * 109.47016 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47400 * 299.99916 * 18 16 14 22 22 C 1.47341 * 117.24811 * 42.95111 * 13 12 11 23 23 C 1.49970 * 117.69848 * 275.00387 * 10 9 8 24 24 C 1.54515 * 110.51029 * 178.09942 * 4 3 2 25 25 C 1.54486 * 104.05833 * 241.21668 * 24 4 3 26 26 O 1.44422 * 104.80333 * 23.97606 * 25 24 4 27 27 C 1.44421 * 105.27604 * 319.49022 * 26 25 24 28 28 H 1.08997 * 109.47397 * 299.99887 * 1 2 3 29 29 H 1.09008 * 109.46926 * 60.00417 * 1 2 3 30 30 H 1.08999 * 109.47241 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46540 * 59.99814 * 3 2 1 32 32 H 1.08993 * 109.47024 * 299.99930 * 3 2 1 33 33 H 0.96992 * 119.99822 * 359.97438 * 7 5 4 34 34 H 1.08997 * 109.47124 * 60.00076 * 8 7 5 35 35 H 1.09004 * 109.47130 * 299.99871 * 8 7 5 36 36 H 1.08997 * 109.47103 * 60.00224 * 9 8 7 37 37 H 1.09004 * 109.47320 * 299.99916 * 9 8 7 38 38 H 1.08003 * 118.17817 * 0.85542 * 11 10 9 39 39 H 1.09000 * 109.51983 * 229.11331 * 12 11 10 40 40 H 1.09004 * 109.52141 * 108.93033 * 12 11 10 41 41 H 0.96996 * 119.99626 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.78047 * 57.80861 * 22 13 12 43 43 H 1.08999 * 109.77790 * 178.62053 * 22 13 12 44 44 H 1.08996 * 109.31137 * 40.73484 * 23 10 9 45 45 H 1.09002 * 109.15670 * 281.21472 * 23 10 9 46 46 H 1.08994 * 110.50778 * 359.85890 * 24 4 3 47 47 H 1.08997 * 110.51257 * 122.57353 * 24 4 3 48 48 H 1.08999 * 110.36716 * 142.80936 * 25 24 4 49 49 H 1.08998 * 110.36762 * 265.14321 * 25 24 4 50 50 H 1.09003 * 110.37126 * 281.67800 * 27 26 25 51 51 H 1.08999 * 110.37142 * 159.34679 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0031 0.4247 1.2151 6 8 4.7878 0.9361 1.9856 7 7 3.5492 -0.8234 1.4450 8 6 4.0042 -1.5624 2.6253 9 6 3.3426 -2.9418 2.6497 10 6 3.8112 -3.7022 3.8634 11 6 3.0714 -3.6561 4.9248 12 6 3.4192 -4.3481 6.2132 13 7 4.5467 -5.2622 5.9810 14 6 4.5641 -6.5230 6.5150 15 1 5.1587 -7.2971 6.0529 16 6 3.8173 -6.8062 7.6505 17 7 3.3426 -5.8246 8.3877 18 14 3.4861 -8.5804 8.1320 19 1 4.7756 -9.2784 8.3674 20 1 2.6725 -8.6126 9.3739 21 1 2.7476 -9.2607 7.0380 22 6 5.6573 -4.7660 5.1496 23 6 5.1012 -4.4595 3.7565 24 6 4.1894 2.5838 -0.0473 25 6 4.9990 2.5746 -1.3630 26 8 4.3521 1.5810 -2.1875 27 6 4.0273 0.4958 -1.2915 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6885 1.8463 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 2.9214 -1.2323 0.8290 34 1 3.7307 -1.0127 3.5259 35 1 5.0873 -1.6792 2.5857 36 1 3.6158 -3.4917 1.7491 37 1 2.2596 -2.8247 2.6895 38 1 2.1532 -3.0891 4.8823 39 1 2.5576 -4.9148 6.5663 40 1 3.6996 -3.6062 6.9610 41 1 2.8205 -6.0225 9.1808 42 1 6.0706 -3.8584 5.5896 43 1 6.4332 -5.5281 5.0775 44 1 5.8251 -3.8619 3.2027 45 1 4.9240 -5.3947 3.2253 46 1 3.4260 3.3613 -0.0740 47 1 4.8509 2.7257 0.8072 48 1 4.9550 3.5526 -1.8423 49 1 6.0338 2.2920 -1.1696 50 1 4.9132 -0.1056 -1.0873 51 1 3.2370 -0.1232 -1.7160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160792625.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:21 Heat of formation + Delta-G solvation = -113.769262 kcal Electronic energy + Delta-G solvation = -30102.779669 eV Core-core repulsion = 26002.195484 eV Total energy + Delta-G solvation = -4100.584186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.85819 -39.78237 -39.28611 -38.58914 -36.74823 -35.11074 -34.09357 -33.10248 -31.51558 -30.86255 -29.90739 -28.01018 -27.15028 -26.30732 -24.93621 -24.25422 -23.67356 -23.03959 -22.43431 -20.68549 -19.46070 -18.66138 -17.80021 -17.49729 -17.25081 -17.06102 -16.85553 -16.72709 -16.28271 -16.10204 -16.05526 -15.75787 -15.56898 -15.39605 -15.15112 -14.85505 -14.28749 -14.12445 -14.00347 -13.83347 -13.38970 -13.27333 -13.21927 -13.06454 -12.87856 -12.77324 -12.61120 -12.56952 -12.39989 -12.26444 -12.21153 -12.19700 -11.90617 -11.79960 -11.67760 -11.25528 -10.95784 -10.84288 -10.67927 -10.59418 -10.09591 -9.49151 -8.75720 -7.88205 -5.30503 1.41147 1.46437 1.48713 1.49234 1.56032 2.13378 2.51020 2.59721 2.94617 3.28292 3.30544 3.64421 3.67501 3.75700 3.87513 3.95767 4.10284 4.12280 4.13863 4.19771 4.28716 4.35615 4.49293 4.54532 4.57995 4.58606 4.62315 4.63844 4.68348 4.72729 4.80285 4.85861 4.90362 4.94335 4.94840 4.96911 4.97985 5.09645 5.16934 5.23140 5.40945 5.45485 5.49632 5.60375 5.68088 5.87648 6.08181 6.27920 6.33320 6.55801 7.12776 7.21399 7.82811 8.37996 9.20348 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.002126 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.386918 B =13167.716780 C =13679.890988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.407 6.407 3 C 0.083 3.917 4 C -0.108 4.108 5 C 0.522 3.478 6 O -0.581 6.581 7 N -0.702 5.702 8 C 0.131 3.869 9 C -0.077 4.077 10 C -0.119 4.119 11 C -0.174 4.174 12 C 0.207 3.793 13 N -0.615 5.615 14 C -0.259 4.259 15 H 0.071 0.929 16 C -0.057 4.057 17 N -0.942 5.942 18 Si 0.972 3.028 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.277 1.277 22 C 0.136 3.864 23 C -0.087 4.087 24 C -0.141 4.141 25 C 0.043 3.957 26 O -0.382 6.382 27 C 0.066 3.934 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.419 0.581 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.055 0.945 40 H 0.002 0.998 41 H 0.250 0.750 42 H 0.017 0.983 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.103 0.897 47 H 0.087 0.913 48 H 0.119 0.881 49 H 0.060 0.940 50 H 0.059 0.941 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 16.785 -24.326 29.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.327 6.327 3 C 0.006 3.994 4 C -0.111 4.111 5 C 0.309 3.691 6 O -0.462 6.462 7 N -0.356 5.356 8 C 0.007 3.993 9 C -0.114 4.114 10 C -0.120 4.120 11 C -0.194 4.194 12 C 0.082 3.918 13 N -0.339 5.339 14 C -0.389 4.389 15 H 0.089 0.911 16 C -0.252 4.252 17 N -0.589 5.589 18 Si 0.800 3.200 19 H -0.201 1.201 20 H -0.220 1.220 21 H -0.203 1.203 22 C 0.010 3.990 23 C -0.126 4.126 24 C -0.179 4.179 25 C -0.033 4.033 26 O -0.301 6.301 27 C -0.011 4.011 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.259 0.741 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.130 0.870 39 H 0.074 0.926 40 H 0.019 0.981 41 H 0.059 0.941 42 H 0.035 0.965 43 H 0.078 0.922 44 H 0.104 0.896 45 H 0.088 0.912 46 H 0.121 0.879 47 H 0.106 0.894 48 H 0.137 0.863 49 H 0.078 0.922 50 H 0.077 0.923 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.383 16.932 -23.868 29.590 hybrid contribution -0.560 -0.810 1.231 1.576 sum -4.943 16.122 -22.637 28.227 Atomic orbital electron populations 1.22908 0.78697 1.04106 1.00870 1.87617 1.21886 1.27580 1.95576 1.22458 0.88978 0.85585 1.02347 1.22238 0.97067 0.97578 0.94266 1.20536 0.80116 0.81872 0.86612 1.90682 1.36762 1.69210 1.49518 1.46062 1.47245 1.15111 1.27158 1.21195 0.98922 0.91627 0.87553 1.20774 1.00667 0.93062 0.96925 1.20570 0.97154 0.99225 0.95043 1.22816 0.99927 1.00607 0.96008 1.19345 0.90685 0.90569 0.91178 1.44419 1.17608 1.13109 1.58784 1.19511 1.26697 0.87118 1.05545 0.91093 1.25816 1.02242 1.01334 0.95794 1.70195 1.40486 1.31846 1.16327 0.85264 0.77933 0.79937 0.76861 1.20052 1.22035 1.20337 1.21145 0.90188 0.96710 0.90915 1.20724 0.94901 0.99304 0.97647 1.23006 1.00867 0.93991 0.99987 1.23594 0.95935 0.93963 0.89795 1.89131 1.78786 1.29687 1.32454 1.23406 1.00670 0.90038 0.86969 0.93866 0.92440 0.88320 0.92469 0.89624 0.74132 0.93368 0.92225 0.89085 0.90032 0.87008 0.92632 0.98064 0.94131 0.96539 0.92202 0.89639 0.91247 0.87857 0.89440 0.86301 0.92215 0.92321 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.50 16 2 O -0.41 -5.13 7.52 -148.98 -1.12 -6.25 16 3 C 0.08 1.03 4.63 71.98 0.33 1.37 16 4 C -0.11 -1.75 0.76 -51.91 -0.04 -1.79 16 5 C 0.52 12.23 6.41 87.66 0.56 12.79 16 6 O -0.58 -18.45 15.28 -3.04 -0.05 -18.50 16 7 N -0.70 -14.72 5.23 -463.04 -2.42 -17.14 16 8 C 0.13 3.28 5.66 86.38 0.49 3.77 16 9 C -0.08 -1.82 5.32 29.85 0.16 -1.66 16 10 C -0.12 -3.95 5.11 -15.14 -0.08 -4.02 16 11 C -0.17 -6.82 9.47 27.11 0.26 -6.57 16 12 C 0.21 10.56 5.23 85.42 0.45 11.00 16 13 N -0.62 -32.22 3.01 -703.38 -2.12 -34.34 16 14 C -0.26 -14.63 9.71 84.04 0.82 -13.81 16 15 H 0.07 3.86 7.88 -2.91 -0.02 3.83 16 16 C -0.06 -3.28 5.01 84.86 0.43 -2.85 16 17 N -0.94 -57.14 11.08 21.65 0.24 -56.90 16 18 Si 0.97 45.64 29.58 68.60 2.03 47.67 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 C 0.14 5.80 6.58 86.25 0.57 6.37 16 23 C -0.09 -2.94 5.95 29.65 0.18 -2.76 16 24 C -0.14 -2.08 6.32 31.61 0.20 -1.88 16 25 C 0.04 0.58 7.63 72.49 0.55 1.14 16 26 O -0.38 -6.43 11.65 -148.98 -1.74 -8.17 16 27 C 0.07 1.01 6.64 72.48 0.48 1.50 16 28 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.42 7.04 6.30 -92.71 -0.58 6.46 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.62 8.09 -2.38 -0.02 1.60 16 36 H 0.09 1.81 8.11 -2.39 -0.02 1.79 16 37 H 0.08 1.77 7.78 -2.38 -0.02 1.75 16 38 H 0.11 3.84 7.73 -2.91 -0.02 3.81 16 39 H 0.06 3.15 6.41 -2.39 -0.02 3.14 16 40 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 42 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.06 2.46 7.96 -2.39 -0.02 2.44 16 44 H 0.09 2.38 8.08 -2.39 -0.02 2.36 16 45 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.10 1.07 7.73 -2.39 -0.02 1.05 16 47 H 0.09 1.71 6.50 -2.39 -0.02 1.69 16 48 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.06 0.98 7.86 -2.39 -0.02 0.96 16 51 H 0.12 1.51 7.42 -2.39 -0.02 1.50 16 Total: -1.00 -72.60 401.82 1.75 -70.85 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.33 Total: 18.69 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 6.60 Total: 4.08 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -4.30 Total: -108.38 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -2.90 Total: -32.92 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -72.60 1.75 -70.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160792625.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.921 kcal (2) G-P(sol) polarization free energy of solvation -72.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds