Wall clock time and date at job start Tue Mar 31 2020 21:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00445 * 2 1 4 4 C 1.52996 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.46071 * 299.96998 * 4 3 2 6 6 N 1.46500 * 109.47310 * 60.02787 * 5 4 3 7 7 C 1.34777 * 120.00492 * 180.02562 * 6 5 4 8 8 O 1.21618 * 119.99595 * 359.97438 * 7 6 5 9 9 C 1.47101 * 120.00414 * 180.02562 * 7 6 5 10 10 C 1.32088 * 118.87634 * 179.72981 * 9 7 6 11 11 C 1.50264 * 122.57414 * 180.14123 * 10 9 7 12 12 O 1.42885 * 110.14808 * 344.80163 * 11 10 9 13 13 C 1.43274 * 113.10165 * 50.33278 * 12 11 10 14 14 C 1.50421 * 118.87369 * 359.97438 * 9 7 6 15 15 C 1.53042 * 109.45987 * 179.97438 * 4 3 2 16 16 C 1.53196 * 109.31301 * 178.62714 * 15 4 3 17 17 N 1.46919 * 108.77357 * 54.63738 * 16 15 4 18 18 C 1.36935 * 120.62952 * 126.36714 * 17 16 15 19 19 H 1.07992 * 120.00276 * 332.45452 * 18 17 16 20 20 C 1.38815 * 120.00026 * 152.17450 * 18 17 16 21 21 N 1.31620 * 119.99785 * 343.17001 * 20 18 17 22 22 Si 1.86799 * 120.00242 * 163.17219 * 20 18 17 23 23 H 1.48499 * 109.47051 * 59.99668 * 22 20 18 24 24 H 1.48497 * 109.47273 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46803 * 299.99780 * 22 20 18 26 26 C 1.46930 * 118.74055 * 306.64082 * 17 16 15 27 27 C 1.52762 * 109.00426 * 53.31040 * 26 17 16 28 28 H 1.08996 * 109.47609 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47368 * 300.00942 * 1 2 3 30 30 H 1.09007 * 109.46981 * 60.00195 * 1 2 3 31 31 H 1.08996 * 109.47051 * 59.99220 * 3 2 1 32 32 H 1.09008 * 109.46718 * 299.99574 * 3 2 1 33 33 H 1.09006 * 109.47543 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47293 * 300.02529 * 5 4 3 35 35 H 0.96998 * 119.99663 * 359.97438 * 6 5 4 36 36 H 1.07992 * 118.70949 * 0.36301 * 10 9 7 37 37 H 1.08998 * 109.49868 * 224.48996 * 11 10 9 38 38 H 1.09003 * 109.07854 * 104.84855 * 11 10 9 39 39 H 1.09002 * 109.63897 * 171.47436 * 13 12 11 40 40 H 1.08999 * 109.63712 * 50.85383 * 13 12 11 41 41 H 1.09000 * 109.45598 * 283.36116 * 14 9 7 42 42 H 1.09002 * 109.45032 * 43.29741 * 14 9 7 43 43 H 1.09005 * 109.49382 * 58.67827 * 15 4 3 44 44 H 1.08991 * 109.52573 * 298.59920 * 15 4 3 45 45 H 1.09000 * 109.58299 * 294.85003 * 16 15 4 46 46 H 1.08994 * 109.70288 * 174.49711 * 16 15 4 47 47 H 0.97003 * 120.00199 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.58738 * 173.14187 * 26 17 16 49 49 H 1.08996 * 109.58558 * 293.57263 * 26 17 16 50 50 H 1.09005 * 109.56252 * 185.54994 * 27 26 17 51 51 H 1.08999 * 109.38709 * 65.51901 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9861 0.4261 1.2506 6 7 3.3906 -0.9124 1.2509 7 6 3.6487 -1.7646 2.2627 8 8 4.3763 -1.4226 3.1752 9 6 3.0512 -3.1088 2.2627 10 6 3.3234 -3.9278 3.2626 11 6 2.7613 -5.3189 3.3449 12 8 1.6729 -5.4649 2.4307 13 6 1.9909 -5.0279 1.1038 14 6 2.1555 -3.5056 1.1213 15 6 4.1577 2.5827 0.0000 16 6 5.6842 2.4579 0.0353 17 7 6.1149 1.6053 -1.0810 18 6 7.0604 2.0436 -1.9692 19 1 7.1785 3.1010 -2.1543 20 6 7.8713 1.1291 -2.6274 21 7 7.9743 -0.1031 -2.1762 22 14 8.8162 1.6472 -4.1532 23 1 9.7363 2.7614 -3.8110 24 1 9.6015 0.4950 -4.6641 25 1 7.8612 2.0968 -5.1978 26 6 5.5073 0.2759 -1.2298 27 6 3.9868 0.4229 -1.2477 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 5.0728 0.3402 1.2515 34 1 3.6637 0.9675 2.1400 35 1 2.8100 -1.1850 0.5233 36 1 3.9726 -3.5829 4.0537 37 1 2.4098 -5.5100 4.3588 38 1 3.5437 -6.0348 3.0928 39 1 1.1833 -5.3012 0.4247 40 1 2.9210 -5.4935 0.7779 41 1 1.1796 -3.0361 1.2453 42 1 2.5989 -3.1777 0.1810 43 1 3.8173 3.1328 0.8773 44 1 3.8570 3.1149 -0.9023 45 1 5.9922 2.0077 0.9790 46 1 6.1360 3.4449 -0.0633 47 1 8.5406 -0.7423 -2.6363 48 1 5.8403 -0.1756 -2.1644 49 1 5.8007 -0.3559 -0.3915 50 1 3.5248 -0.5643 -1.2585 51 1 3.6871 0.9746 -2.1387 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162224578.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:44 Heat of formation + Delta-G solvation = -87.155666 kcal Electronic energy + Delta-G solvation = -31784.316805 eV Core-core repulsion = 27684.886672 eV Total energy + Delta-G solvation = -4099.430133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.30578 -39.40805 -38.25737 -37.11974 -34.53001 -33.82203 -32.94785 -31.24151 -30.83876 -29.98175 -27.68140 -27.02064 -25.96599 -25.22044 -23.88045 -23.71135 -22.31204 -21.00258 -20.87243 -18.86777 -18.04932 -17.51561 -16.63312 -16.36796 -16.25674 -15.83926 -15.64345 -15.34773 -15.27250 -14.89413 -14.69476 -14.51224 -13.87669 -13.78014 -13.57949 -13.49125 -13.28744 -12.95926 -12.88726 -12.66057 -12.58194 -12.19645 -11.91921 -11.67625 -11.61906 -11.44438 -11.28511 -10.94244 -10.92064 -10.71911 -10.54590 -10.27369 -10.18700 -10.16508 -9.89465 -9.74759 -9.53793 -9.42576 -9.40237 -9.17218 -8.54592 -8.41329 -6.64685 -5.77089 -3.19640 1.39289 3.37882 3.38673 3.44630 3.45394 3.50215 3.65855 3.88094 4.50324 4.57999 4.71042 4.73481 4.94892 5.03039 5.03988 5.10970 5.19286 5.23758 5.27654 5.30958 5.41091 5.43397 5.48086 5.50500 5.52143 5.56071 5.62475 5.67760 5.71542 5.75801 6.02039 6.05244 6.20311 6.24877 6.35848 6.39100 6.47110 6.59946 6.62719 6.70627 6.81249 6.86044 6.88935 6.98350 7.10325 7.38391 7.69023 7.80415 8.00185 8.46164 8.61268 9.22689 9.86099 10.42762 11.31210 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012186 B = 0.003523 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.187729 B = 7946.457093 C = 8917.508214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.072 3.928 4 C -0.059 4.059 5 C 0.131 3.869 6 N -0.700 5.700 7 C 0.542 3.458 8 O -0.554 6.554 9 C -0.155 4.155 10 C -0.127 4.127 11 C 0.087 3.913 12 O -0.380 6.380 13 C 0.059 3.941 14 C -0.118 4.118 15 C -0.119 4.119 16 C 0.143 3.857 17 N -0.590 5.590 18 C -0.254 4.254 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.171 3.829 27 C -0.125 4.125 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.410 0.590 36 H 0.135 0.865 37 H 0.110 0.890 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.058 0.942 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.022 0.978 46 H 0.056 0.944 47 H 0.254 0.746 48 H 0.086 0.914 49 H 0.021 0.979 50 H 0.053 0.947 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.009 -5.981 6.237 19.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.005 4.005 4 C -0.060 4.060 5 C 0.007 3.993 6 N -0.356 5.356 7 C 0.330 3.670 8 O -0.435 6.435 9 C -0.158 4.158 10 C -0.147 4.147 11 C 0.011 3.989 12 O -0.298 6.298 13 C -0.017 4.017 14 C -0.155 4.155 15 C -0.159 4.159 16 C 0.016 3.984 17 N -0.313 5.313 18 C -0.384 4.384 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.045 3.955 27 C -0.164 4.164 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.252 0.748 36 H 0.152 0.848 37 H 0.128 0.872 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.040 0.960 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.104 0.896 49 H 0.039 0.961 50 H 0.072 0.928 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.450 -6.080 6.814 18.815 hybrid contribution 0.289 0.608 -1.206 1.381 sum -16.161 -5.472 5.608 17.960 Atomic orbital electron populations 1.22704 0.81369 1.02444 0.99819 1.87554 1.19317 1.28842 1.95329 1.22769 0.93906 0.83923 0.99854 1.20807 0.91442 0.97307 0.96436 1.21463 0.99533 0.81892 0.96375 1.46168 1.49746 1.14646 1.25040 1.18372 0.81124 0.85080 0.82469 1.90761 1.38300 1.77801 1.36613 1.20940 1.01551 0.95015 0.98303 1.23632 0.97758 0.95462 0.97868 1.21557 0.89819 0.92843 0.94690 1.88102 1.37176 1.84860 1.19681 1.22681 1.01744 0.92957 0.84347 1.21067 0.99717 0.97430 0.97335 1.21986 0.99334 0.93515 1.01050 1.20929 0.90567 0.95450 0.91405 1.44015 1.44615 1.14876 1.27824 1.19137 1.10407 0.92266 1.16587 0.91739 1.25033 0.97510 0.96619 1.00349 1.70034 1.40776 1.04448 1.39266 0.86388 0.79580 0.77407 0.83486 1.20916 1.21671 1.21099 1.20712 0.86348 0.86799 1.01657 1.22109 1.00913 0.98338 0.95089 0.89888 0.94366 0.94128 0.93589 0.93063 0.89736 0.92642 0.74809 0.84754 0.87235 0.91073 0.88126 0.92331 0.89478 0.89334 0.92698 0.91538 0.96014 0.92545 0.93615 0.89594 0.96113 0.92836 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.75 6.73 -35.23 -0.24 -4.99 16 3 C 0.07 0.92 4.80 37.16 0.18 1.10 16 4 C -0.06 -0.94 0.51 -154.47 -0.08 -1.02 16 5 C 0.13 2.26 3.80 -4.05 -0.02 2.24 16 6 N -0.70 -11.24 4.57 -61.49 -0.28 -11.52 16 7 C 0.54 9.31 7.73 -12.66 -0.10 9.21 16 8 O -0.55 -11.47 16.06 5.26 0.08 -11.39 16 9 C -0.16 -2.12 5.86 -103.09 -0.60 -2.73 16 10 C -0.13 -1.57 9.58 -36.44 -0.35 -1.92 16 11 C 0.09 0.83 7.04 35.79 0.25 1.08 16 12 O -0.38 -4.12 10.83 -35.23 -0.38 -4.50 16 13 C 0.06 0.56 6.88 37.22 0.26 0.81 16 14 C -0.12 -1.27 5.29 -27.95 -0.15 -1.42 16 15 C -0.12 -1.93 4.91 -26.61 -0.13 -2.06 16 16 C 0.14 2.92 6.05 -3.71 -0.02 2.89 16 17 N -0.59 -14.47 3.00 -172.59 -0.52 -14.99 16 18 C -0.25 -6.90 9.58 -15.06 -0.14 -7.04 16 19 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 20 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 21 N -0.90 -26.16 11.18 55.49 0.62 -25.54 16 22 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.17 3.98 4.81 -3.93 -0.02 3.96 16 27 C -0.13 -2.28 4.57 -26.83 -0.12 -2.41 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.08 1.76 4.99 -51.93 -0.26 1.51 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.41 5.94 3.01 -40.82 -0.12 5.81 16 36 H 0.13 1.75 7.29 -52.49 -0.38 1.37 16 37 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 0.94 7.31 -51.93 -0.38 0.56 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.02 0.46 6.69 -51.93 -0.35 0.12 16 46 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.09 2.28 6.05 -51.93 -0.31 1.96 16 49 H 0.02 0.53 6.70 -51.93 -0.35 0.18 16 50 H 0.05 0.91 6.49 -51.93 -0.34 0.57 16 51 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -32.54 387.23 -8.29 -40.84 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -8.37 Total: 5.55 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.02 Total: 4.14 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.18 Total: -52.06 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.53 Total: -20.87 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.54 -8.29 -40.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162224578.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.319 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds