Wall clock time and date at job start Tue Mar 31 2020 21:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00445 * 2 1 4 4 C 1.52996 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.46071 * 299.96998 * 4 3 2 6 6 N 1.46500 * 109.47310 * 60.02787 * 5 4 3 7 7 C 1.34777 * 120.00492 * 180.02562 * 6 5 4 8 8 O 1.21618 * 119.99595 * 359.97438 * 7 6 5 9 9 C 1.47101 * 120.00414 * 180.02562 * 7 6 5 10 10 C 1.32088 * 118.87634 * 179.72981 * 9 7 6 11 11 C 1.50264 * 122.57414 * 180.14123 * 10 9 7 12 12 O 1.42885 * 110.14808 * 344.80163 * 11 10 9 13 13 C 1.43274 * 113.10165 * 50.33278 * 12 11 10 14 14 C 1.50421 * 118.87369 * 359.97438 * 9 7 6 15 15 C 1.53042 * 109.45987 * 179.97438 * 4 3 2 16 16 C 1.53196 * 109.31301 * 178.62714 * 15 4 3 17 17 N 1.46919 * 108.77357 * 54.63738 * 16 15 4 18 18 C 1.36935 * 120.62952 * 126.36714 * 17 16 15 19 19 H 1.07992 * 120.00276 * 332.45452 * 18 17 16 20 20 C 1.38815 * 120.00026 * 152.17450 * 18 17 16 21 21 N 1.31620 * 119.99785 * 343.17001 * 20 18 17 22 22 Si 1.86799 * 120.00242 * 163.17219 * 20 18 17 23 23 H 1.48499 * 109.47051 * 59.99668 * 22 20 18 24 24 H 1.48497 * 109.47273 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46803 * 299.99780 * 22 20 18 26 26 C 1.46930 * 118.74055 * 306.64082 * 17 16 15 27 27 C 1.52762 * 109.00426 * 53.31040 * 26 17 16 28 28 H 1.08996 * 109.47609 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47368 * 300.00942 * 1 2 3 30 30 H 1.09007 * 109.46981 * 60.00195 * 1 2 3 31 31 H 1.08996 * 109.47051 * 59.99220 * 3 2 1 32 32 H 1.09008 * 109.46718 * 299.99574 * 3 2 1 33 33 H 1.09006 * 109.47543 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47293 * 300.02529 * 5 4 3 35 35 H 0.96998 * 119.99663 * 359.97438 * 6 5 4 36 36 H 1.07992 * 118.70949 * 0.36301 * 10 9 7 37 37 H 1.08998 * 109.49868 * 224.48996 * 11 10 9 38 38 H 1.09003 * 109.07854 * 104.84855 * 11 10 9 39 39 H 1.09002 * 109.63897 * 171.47436 * 13 12 11 40 40 H 1.08999 * 109.63712 * 50.85383 * 13 12 11 41 41 H 1.09000 * 109.45598 * 283.36116 * 14 9 7 42 42 H 1.09002 * 109.45032 * 43.29741 * 14 9 7 43 43 H 1.09005 * 109.49382 * 58.67827 * 15 4 3 44 44 H 1.08991 * 109.52573 * 298.59920 * 15 4 3 45 45 H 1.09000 * 109.58299 * 294.85003 * 16 15 4 46 46 H 1.08994 * 109.70288 * 174.49711 * 16 15 4 47 47 H 0.97003 * 120.00199 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.58738 * 173.14187 * 26 17 16 49 49 H 1.08996 * 109.58558 * 293.57263 * 26 17 16 50 50 H 1.09005 * 109.56252 * 185.54994 * 27 26 17 51 51 H 1.08999 * 109.38709 * 65.51901 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9861 0.4261 1.2506 6 7 3.3906 -0.9124 1.2509 7 6 3.6487 -1.7646 2.2627 8 8 4.3763 -1.4226 3.1752 9 6 3.0512 -3.1088 2.2627 10 6 3.3234 -3.9278 3.2626 11 6 2.7613 -5.3189 3.3449 12 8 1.6729 -5.4649 2.4307 13 6 1.9909 -5.0279 1.1038 14 6 2.1555 -3.5056 1.1213 15 6 4.1577 2.5827 0.0000 16 6 5.6842 2.4579 0.0353 17 7 6.1149 1.6053 -1.0810 18 6 7.0604 2.0436 -1.9692 19 1 7.1785 3.1010 -2.1543 20 6 7.8713 1.1291 -2.6274 21 7 7.9743 -0.1031 -2.1762 22 14 8.8162 1.6472 -4.1532 23 1 9.7363 2.7614 -3.8110 24 1 9.6015 0.4950 -4.6641 25 1 7.8612 2.0968 -5.1978 26 6 5.5073 0.2759 -1.2298 27 6 3.9868 0.4229 -1.2477 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 5.0728 0.3402 1.2515 34 1 3.6637 0.9675 2.1400 35 1 2.8100 -1.1850 0.5233 36 1 3.9726 -3.5829 4.0537 37 1 2.4098 -5.5100 4.3588 38 1 3.5437 -6.0348 3.0928 39 1 1.1833 -5.3012 0.4247 40 1 2.9210 -5.4935 0.7779 41 1 1.1796 -3.0361 1.2453 42 1 2.5989 -3.1777 0.1810 43 1 3.8173 3.1328 0.8773 44 1 3.8570 3.1149 -0.9023 45 1 5.9922 2.0077 0.9790 46 1 6.1360 3.4449 -0.0633 47 1 8.5406 -0.7423 -2.6363 48 1 5.8403 -0.1756 -2.1644 49 1 5.8007 -0.3559 -0.3915 50 1 3.5248 -0.5643 -1.2585 51 1 3.6871 0.9746 -2.1387 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162224578.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:43 Heat of formation + Delta-G solvation = -109.093368 kcal Electronic energy + Delta-G solvation = -31785.268096 eV Core-core repulsion = 27684.886672 eV Total energy + Delta-G solvation = -4100.381424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.55443 -40.50731 -39.42250 -38.29297 -36.12660 -34.97106 -34.38387 -32.71808 -31.97720 -31.65437 -28.99050 -28.19658 -27.08108 -26.28210 -25.48874 -24.58894 -23.92002 -22.53269 -22.19814 -20.23693 -19.34824 -18.73799 -18.14023 -17.41979 -17.17503 -17.08102 -16.83755 -16.68514 -16.37105 -16.15674 -15.92250 -15.73673 -15.32583 -15.26271 -15.03623 -14.76564 -14.54504 -14.34628 -14.13804 -13.76991 -13.61979 -13.38268 -13.30145 -13.06725 -12.97001 -12.64368 -12.54704 -12.51603 -12.32411 -12.29674 -12.01776 -11.85522 -11.80990 -11.47269 -11.26581 -11.13374 -11.11914 -10.58199 -10.53662 -10.47536 -10.21860 -9.85866 -8.66123 -7.86398 -5.32110 0.30780 1.46451 1.48442 1.55481 2.21220 2.23825 2.51575 2.81952 2.97239 3.28217 3.64496 3.66292 3.72321 3.73417 3.88090 3.94629 3.97431 4.25278 4.29716 4.32889 4.45454 4.46821 4.49578 4.53408 4.55933 4.61331 4.65876 4.67850 4.70299 4.74253 4.80655 4.84305 4.90177 4.91708 5.00242 5.02736 5.14917 5.22071 5.24965 5.26446 5.35643 5.47195 5.50202 5.59798 5.65123 5.78040 6.10047 6.25639 6.39137 6.71369 7.15517 7.31425 7.87248 8.39055 9.19674 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012186 B = 0.003523 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.187729 B = 7946.457093 C = 8917.508214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.409 6.409 3 C 0.081 3.919 4 C -0.052 4.052 5 C 0.138 3.862 6 N -0.691 5.691 7 C 0.533 3.467 8 O -0.602 6.602 9 C -0.179 4.179 10 C -0.115 4.115 11 C 0.088 3.912 12 O -0.389 6.389 13 C 0.059 3.941 14 C -0.112 4.112 15 C -0.108 4.108 16 C 0.137 3.863 17 N -0.608 5.608 18 C -0.264 4.264 19 H 0.069 0.931 20 C -0.051 4.051 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.276 1.276 24 H -0.296 1.296 25 H -0.275 1.275 26 C 0.183 3.817 27 C -0.109 4.109 28 H 0.099 0.901 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.418 0.582 36 H 0.121 0.879 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.126 0.874 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.006 0.994 46 H 0.058 0.942 47 H 0.248 0.752 48 H 0.049 0.951 49 H -0.014 1.014 50 H 0.065 0.935 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.975 -5.888 5.723 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.328 6.328 3 C 0.004 3.996 4 C -0.053 4.053 5 C 0.014 3.986 6 N -0.347 5.347 7 C 0.322 3.678 8 O -0.486 6.486 9 C -0.181 4.181 10 C -0.135 4.135 11 C 0.012 3.988 12 O -0.308 6.308 13 C -0.017 4.017 14 C -0.149 4.149 15 C -0.147 4.147 16 C 0.012 3.988 17 N -0.332 5.332 18 C -0.394 4.394 19 H 0.087 0.913 20 C -0.246 4.246 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.201 1.201 26 C 0.057 3.943 27 C -0.148 4.148 28 H 0.117 0.883 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.263 0.737 36 H 0.138 0.862 37 H 0.151 0.849 38 H 0.107 0.893 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.024 0.976 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.067 0.933 49 H 0.004 0.996 50 H 0.083 0.917 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.467 -5.966 6.284 21.308 hybrid contribution 1.258 0.562 -0.934 1.665 sum -18.209 -5.404 5.350 19.733 Atomic orbital electron populations 1.22910 0.79247 1.03896 1.00670 1.87494 1.21461 1.28361 1.95521 1.22568 0.90863 0.84710 1.01421 1.20706 0.94339 0.96276 0.93953 1.21261 0.96940 0.82920 0.97475 1.46117 1.49340 1.14131 1.25065 1.19063 0.80493 0.86442 0.81812 1.90724 1.40509 1.78962 1.38375 1.20991 1.03327 0.93429 1.00402 1.23906 0.96282 0.96745 0.96556 1.21751 0.90196 0.90917 0.95890 1.88097 1.37655 1.84759 1.20263 1.22822 1.02957 0.91668 0.84296 1.21078 0.99321 0.98721 0.95783 1.21846 0.95592 0.94253 1.03038 1.21081 0.93904 0.94450 0.89358 1.44287 1.44633 1.15472 1.28766 1.19531 1.10489 0.92579 1.16793 0.91304 1.25813 0.98926 0.96685 1.03216 1.70217 1.41949 1.05566 1.40570 0.85342 0.78306 0.76766 0.80030 1.20227 1.22273 1.20103 1.20420 0.89803 0.85867 0.98161 1.21860 0.96687 0.99619 0.96649 0.88271 0.93691 0.93031 0.91941 0.91516 0.94275 0.92215 0.73726 0.86160 0.84860 0.89262 0.85597 0.92130 0.88450 0.89580 0.89401 0.90618 0.97589 0.92373 0.94286 0.93286 0.99576 0.91676 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.65 16 2 O -0.41 -8.74 6.73 -148.98 -1.00 -9.75 16 3 C 0.08 1.82 4.80 71.98 0.35 2.16 16 4 C -0.05 -1.59 0.51 -52.16 -0.03 -1.61 16 5 C 0.14 4.86 3.80 86.38 0.33 5.19 16 6 N -0.69 -22.43 4.57 -466.71 -2.13 -24.56 16 7 C 0.53 18.85 7.73 86.57 0.67 19.52 16 8 O -0.60 -26.23 16.06 -4.09 -0.07 -26.30 16 9 C -0.18 -4.85 5.86 -18.58 -0.11 -4.96 16 10 C -0.11 -2.77 9.58 24.59 0.24 -2.54 16 11 C 0.09 1.49 7.04 71.10 0.50 1.99 16 12 O -0.39 -7.40 10.83 -148.98 -1.61 -9.02 16 13 C 0.06 0.96 6.88 72.03 0.50 1.46 16 14 C -0.11 -2.23 5.29 29.80 0.16 -2.07 16 15 C -0.11 -3.33 4.91 30.67 0.15 -3.18 16 16 C 0.14 5.70 6.05 86.37 0.52 6.22 16 17 N -0.61 -30.75 3.00 -699.95 -2.10 -32.85 16 18 C -0.26 -14.62 9.58 84.03 0.81 -13.82 16 19 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 20 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 21 N -0.94 -56.90 11.18 21.65 0.24 -56.66 16 22 Si 0.97 45.28 29.59 68.60 2.03 47.31 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 C 0.18 8.96 4.81 86.22 0.41 9.37 16 27 C -0.11 -3.96 4.57 30.53 0.14 -3.82 16 28 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.04 1.74 4.99 -2.38 -0.01 1.73 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.42 11.85 3.01 -92.71 -0.28 11.58 16 36 H 0.12 3.23 7.29 -2.91 -0.02 3.21 16 37 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 0.97 8.09 -2.39 -0.02 0.95 16 41 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.09 1.74 7.31 -2.39 -0.02 1.72 16 43 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 44 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.01 0.28 6.69 -2.39 -0.02 0.26 16 46 H 0.06 2.34 7.93 -2.39 -0.02 2.32 16 47 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 48 H 0.05 2.74 6.05 -2.39 -0.01 2.72 16 49 H -0.01 -0.76 6.70 -2.39 -0.02 -0.77 16 50 H 0.06 2.19 6.49 -2.38 -0.02 2.18 16 51 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -75.12 387.23 2.30 -72.82 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.64 Total: 25.92 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 6.30 Total: 13.08 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -3.99 Total: -114.06 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -2.68 Total: -45.06 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -75.12 2.30 -72.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162224578.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.276 kcal (2) G-P(sol) polarization free energy of solvation -75.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds