Wall clock time and date at job start Tue Mar 31 2020 21:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47187 * 2 1 4 4 C 1.53004 * 109.47116 * 240.00285 * 2 1 3 5 5 O 1.45198 * 109.47007 * 120.00215 * 2 1 3 6 6 C 1.34582 * 117.00046 * 60.00176 * 5 2 1 7 7 O 1.21455 * 120.00138 * 359.97438 * 6 5 2 8 8 N 1.34781 * 119.99999 * 179.97438 * 6 5 2 9 9 C 1.46821 * 124.33300 * 180.02562 * 8 6 5 10 10 C 1.54486 * 105.44415 * 163.00072 * 9 8 6 11 11 H 1.08996 * 110.96862 * 267.23435 * 10 9 8 12 12 N 1.46896 * 110.96650 * 143.50956 * 10 9 8 13 13 C 1.46900 * 110.99588 * 158.09476 * 12 10 9 14 14 H 1.08999 * 109.41190 * 324.85249 * 13 12 10 15 15 C 1.52958 * 109.41838 * 84.64538 * 13 12 10 16 16 C 1.53661 * 109.32584 * 183.83365 * 15 13 12 17 17 C 1.51273 * 108.30803 * 305.13462 * 16 15 13 18 18 C 1.37876 * 120.84996 * 231.37997 * 17 16 15 19 19 N 1.31512 * 119.99838 * 6.10747 * 18 17 16 20 20 Si 1.86799 * 119.99913 * 186.10541 * 18 17 16 21 21 H 1.48504 * 109.47047 * 270.00020 * 20 18 17 22 22 H 1.48497 * 109.47169 * 150.00212 * 20 18 17 23 23 H 1.48496 * 109.47069 * 29.99965 * 20 18 17 24 24 C 1.51267 * 118.29769 * 51.66257 * 17 16 15 25 25 C 1.52965 * 109.41048 * 204.99938 * 13 12 10 26 26 C 1.54629 * 101.79532 * 25.37231 * 10 9 8 27 27 C 1.34415 * 124.35000 * 359.97438 * 8 6 5 28 28 O 1.21229 * 124.93897 * 0.44240 * 27 8 6 29 29 H 1.09003 * 109.47006 * 300.00391 * 1 2 3 30 30 H 1.08998 * 109.47116 * 59.99701 * 1 2 3 31 31 H 1.08995 * 109.47374 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46913 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47337 * 300.00164 * 3 2 1 34 34 H 1.09003 * 109.46781 * 60.00196 * 3 2 1 35 35 H 1.08998 * 109.46626 * 299.99950 * 4 2 1 36 36 H 1.08998 * 109.47116 * 60.00015 * 4 2 1 37 37 H 1.08993 * 109.47386 * 180.02562 * 4 2 1 38 38 H 1.09006 * 110.28329 * 44.00090 * 9 8 6 39 39 H 1.08996 * 110.24405 * 281.98121 * 9 8 6 40 40 H 1.00899 * 111.00251 * 34.13968 * 12 10 9 41 41 H 1.09002 * 109.48096 * 303.68829 * 15 13 12 42 42 H 1.08999 * 109.48327 * 63.70744 * 15 13 12 43 43 H 1.09006 * 109.68870 * 185.52343 * 16 15 13 44 44 H 1.09000 * 109.78417 * 64.81197 * 16 15 13 45 45 H 0.96996 * 120.00278 * 354.36744 * 19 18 17 46 46 H 1.08992 * 109.63061 * 68.11084 * 24 17 16 47 47 H 1.09002 * 109.62202 * 188.68391 * 24 17 16 48 48 H 1.08995 * 109.48524 * 56.31194 * 25 13 12 49 49 H 1.08999 * 109.49329 * 296.27640 * 25 13 12 50 50 H 1.09003 * 110.48750 * 93.89874 * 26 10 9 51 51 H 1.09001 * 110.48553 * 216.40791 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6524 -1.9718 1.3382 7 8 0.9514 -2.5087 0.5042 8 7 2.0682 -2.6653 2.4165 9 6 1.7320 -4.0705 2.6775 10 6 2.7480 -4.5461 3.7397 11 1 3.6202 -5.0001 3.2694 12 7 2.1208 -5.4769 4.6873 13 6 3.1303 -6.3144 5.3488 14 1 3.9331 -6.5371 4.6460 15 6 3.7036 -5.5645 6.5524 16 6 4.8260 -6.4015 7.1854 17 6 4.2718 -7.7708 7.5112 18 6 4.4217 -8.3132 8.7699 19 7 4.9454 -7.5933 9.7379 20 14 3.8809 -10.0704 9.1003 21 1 2.4617 -10.0776 9.5373 22 1 4.7305 -10.6574 10.1674 23 1 4.0207 -10.8730 7.8587 24 6 3.5545 -8.5326 6.4187 25 6 2.4830 -7.6206 5.8119 26 6 3.1233 -3.2172 4.4355 27 6 2.8445 -2.1596 3.3903 28 8 3.2602 -1.0214 3.4262 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7488 -1.2493 36 1 1.6767 -0.2073 -2.1392 37 1 3.1299 -0.7216 -1.2491 38 1 1.8356 -4.6594 1.7661 39 1 0.7163 -4.1496 3.0650 40 1 1.4239 -6.0447 4.2289 41 1 4.1066 -4.6061 6.2253 42 1 2.9145 -5.3959 7.2852 43 1 5.1723 -5.9197 8.0999 44 1 5.6542 -6.4991 6.4835 45 1 5.3009 -6.7109 9.5484 46 1 4.2670 -8.8240 5.6471 47 1 3.0835 -9.4206 6.8403 48 1 2.0210 -8.1195 4.9600 49 1 1.7227 -7.4038 6.5623 50 1 2.4999 -3.0579 5.3154 51 1 4.1779 -3.2154 4.7109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171688603.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:45 Heat of formation + Delta-G solvation = -121.142084 kcal Electronic energy + Delta-G solvation = -30522.141168 eV Core-core repulsion = 26421.237273 eV Total energy + Delta-G solvation = -4100.903895 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.92453 -40.19089 -38.05385 -37.55299 -36.32063 -34.68384 -34.08168 -32.16311 -30.22916 -29.76864 -27.93536 -27.73754 -27.71846 -26.07408 -24.09247 -22.30612 -21.72889 -21.42517 -20.73433 -19.46865 -19.33720 -18.20215 -17.41443 -16.97840 -16.58184 -16.05419 -15.67451 -15.45545 -15.07363 -14.82512 -14.46538 -14.23241 -14.03812 -13.88325 -13.75715 -13.62248 -13.39818 -12.85383 -12.80677 -12.51647 -12.36825 -12.28316 -12.24573 -12.00844 -11.84939 -11.79375 -11.60991 -11.47750 -11.29783 -11.04514 -10.76361 -10.72544 -10.65427 -10.39101 -10.21941 -10.08000 -10.02044 -9.89783 -9.49494 -9.24620 -8.54539 -8.39341 -8.22557 -6.44343 -4.03143 1.54566 1.56863 2.75294 3.36465 3.37721 3.41344 3.56976 3.86712 4.07194 4.29144 4.34298 4.40904 4.45371 4.54455 4.72530 4.94621 5.05023 5.14576 5.19184 5.23713 5.28172 5.30975 5.36634 5.43763 5.48998 5.52149 5.54303 5.64521 5.71059 5.74009 5.81725 5.91155 5.95680 6.04378 6.06714 6.41818 6.42293 6.51226 6.64793 6.68915 6.77689 6.90022 6.99027 7.23244 7.33639 7.35343 7.51318 7.59793 7.61664 7.75154 8.04874 8.30324 8.86466 9.59450 10.93414 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.032725 B = 0.002180 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.405651 B =12842.811740 C =13390.377138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.128 3.872 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.332 6.332 6 C 0.664 3.336 7 O -0.538 6.538 8 N -0.560 5.560 9 C 0.109 3.891 10 C 0.079 3.921 11 H 0.074 0.926 12 N -0.675 5.675 13 C 0.102 3.898 14 H 0.037 0.963 15 C -0.094 4.094 16 C -0.001 4.001 17 C -0.568 4.568 18 C 0.034 3.966 19 N -0.908 5.908 20 Si 1.063 2.937 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.284 1.284 24 C -0.006 4.006 25 C -0.108 4.108 26 C -0.144 4.144 27 C 0.522 3.478 28 O -0.473 6.473 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.342 0.658 41 H 0.030 0.970 42 H 0.056 0.944 43 H 0.037 0.963 44 H 0.003 0.997 45 H 0.272 0.728 46 H 0.009 0.991 47 H 0.029 0.971 48 H 0.030 0.970 49 H 0.061 0.939 50 H 0.129 0.871 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.780 11.887 -19.331 23.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.092 3.908 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.245 6.245 6 C 0.421 3.579 7 O -0.426 6.426 8 N -0.311 5.311 9 C -0.012 4.012 10 C -0.032 4.032 11 H 0.091 0.909 12 N -0.308 5.308 13 C -0.006 4.006 14 H 0.055 0.945 15 C -0.132 4.132 16 C -0.039 4.039 17 C -0.587 4.587 18 C -0.171 4.171 19 N -0.544 5.544 20 Si 0.892 3.108 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.211 1.211 24 C -0.044 4.044 25 C -0.147 4.147 26 C -0.184 4.184 27 C 0.311 3.689 28 O -0.342 6.342 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.161 0.839 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.021 0.979 45 H 0.085 0.915 46 H 0.027 0.973 47 H 0.048 0.952 48 H 0.049 0.951 49 H 0.080 0.920 50 H 0.146 0.854 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.963 11.838 -17.964 22.940 hybrid contribution 0.277 0.553 -2.041 2.133 sum -7.686 12.391 -20.005 24.755 Atomic orbital electron populations 1.22522 0.93774 1.04954 1.02845 1.22258 0.94556 0.92025 0.81998 1.21840 1.02531 0.92081 1.03170 1.22522 1.01817 1.03250 0.96506 1.86584 1.70073 1.21979 1.45913 1.18021 0.77837 0.81164 0.80860 1.90912 1.39074 1.70588 1.42036 1.46280 1.49202 1.14765 1.20852 1.22525 1.00886 0.77454 1.00285 1.22458 0.95787 0.93976 0.91012 0.90870 1.60739 1.16301 1.23055 1.30699 1.21552 0.91331 0.92301 0.95424 0.94549 1.21711 0.99447 0.96234 0.95816 1.19539 0.93097 0.95228 0.96034 1.20991 1.38528 1.01701 0.97433 1.25744 0.95194 1.04543 0.91653 1.70786 1.37380 1.12817 1.33401 0.83627 0.76593 0.75241 0.75323 1.21214 1.21511 1.21074 1.19591 0.93664 0.94699 0.96432 1.21774 0.99515 0.94818 0.98575 1.22670 1.05810 0.91868 0.98046 1.21653 0.75929 0.88946 0.82375 1.90785 1.49161 1.18884 1.75386 0.91927 0.90809 0.89579 0.91269 0.90022 0.91247 0.89601 0.90793 0.91954 0.88622 0.88370 0.83875 0.95108 0.92532 0.94463 0.97899 0.91494 0.97279 0.95235 0.95149 0.92047 0.85354 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 8.37 37.16 0.31 -1.36 16 2 C 0.13 1.28 1.13 -90.62 -0.10 1.18 16 3 C -0.14 -1.08 8.85 37.16 0.33 -0.75 16 4 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 5 O -0.33 -4.43 8.31 -47.05 -0.39 -4.82 16 6 C 0.66 8.87 7.81 54.06 0.42 9.29 16 7 O -0.54 -7.36 12.10 -19.24 -0.23 -7.60 16 8 N -0.56 -6.91 2.99 -119.54 -0.36 -7.27 16 9 C 0.11 1.08 6.33 -3.09 -0.02 1.06 16 10 C 0.08 0.86 3.43 -66.08 -0.23 0.64 16 11 H 0.07 0.80 7.50 -51.93 -0.39 0.41 16 12 N -0.68 -8.56 6.14 -98.08 -0.60 -9.16 16 13 C 0.10 1.69 2.39 -67.75 -0.16 1.53 16 14 H 0.04 0.62 7.47 -51.93 -0.39 0.23 16 15 C -0.09 -1.80 5.34 -26.41 -0.14 -1.95 16 16 C 0.00 -0.02 5.99 -27.26 -0.16 -0.18 16 17 C -0.57 -14.27 5.50 -98.92 -0.54 -14.82 16 18 C 0.03 0.91 5.46 -17.82 -0.10 0.81 16 19 N -0.91 -26.21 13.66 55.43 0.76 -25.45 16 20 Si 1.06 24.17 27.47 -169.99 -4.67 19.50 16 21 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.07 6.73 56.52 0.38 -5.69 16 24 C -0.01 -0.12 5.55 -27.48 -0.15 -0.27 16 25 C -0.11 -1.97 5.24 -26.63 -0.14 -2.11 16 26 C -0.14 -1.70 5.10 -26.74 -0.14 -1.83 16 27 C 0.52 7.00 7.95 -10.86 -0.09 6.92 16 28 O -0.47 -7.77 16.49 -14.78 -0.24 -8.01 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.94 5.88 -51.93 -0.31 0.63 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.93 5.88 -51.93 -0.31 0.62 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.85 8.11 -51.93 -0.42 0.43 16 39 H 0.10 0.89 8.05 -51.93 -0.42 0.47 16 40 H 0.34 3.74 8.02 -39.29 -0.32 3.42 16 41 H 0.03 0.53 5.92 -51.93 -0.31 0.22 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.04 0.93 5.80 -51.93 -0.30 0.63 16 44 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 45 H 0.27 7.79 6.36 -40.82 -0.26 7.53 16 46 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.03 0.64 5.03 -51.93 -0.26 0.37 16 48 H 0.03 0.47 8.05 -51.93 -0.42 0.05 16 49 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.13 1.56 8.08 -51.93 -0.42 1.14 16 51 H 0.11 1.33 7.43 -51.93 -0.39 0.94 16 LS Contribution 388.02 15.07 5.85 5.85 Total: -1.00 -30.38 388.02 -8.85 -39.23 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.36 Total: 0.93 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -0.60 Total: -3.19 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: -0.20 Total: -41.88 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.87 Total: -20.43 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -4.67 Total: 19.50 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.38 -8.85 -39.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171688603.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.910 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds