Wall clock time and date at job start Tue Mar 31 2020 21:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47187 * 2 1 4 4 C 1.53004 * 109.47116 * 240.00285 * 2 1 3 5 5 O 1.45198 * 109.47007 * 120.00215 * 2 1 3 6 6 C 1.34582 * 117.00046 * 60.00176 * 5 2 1 7 7 O 1.21455 * 120.00138 * 359.97438 * 6 5 2 8 8 N 1.34781 * 119.99999 * 179.97438 * 6 5 2 9 9 C 1.46821 * 124.33300 * 180.02562 * 8 6 5 10 10 C 1.54486 * 105.44415 * 163.00072 * 9 8 6 11 11 H 1.08996 * 110.96862 * 267.23435 * 10 9 8 12 12 N 1.46896 * 110.96650 * 143.50956 * 10 9 8 13 13 C 1.46900 * 110.99588 * 158.09476 * 12 10 9 14 14 H 1.08999 * 109.41190 * 324.85249 * 13 12 10 15 15 C 1.52958 * 109.41838 * 84.64538 * 13 12 10 16 16 C 1.53661 * 109.32584 * 183.83365 * 15 13 12 17 17 C 1.51273 * 108.30803 * 305.13462 * 16 15 13 18 18 C 1.37876 * 120.84996 * 231.37997 * 17 16 15 19 19 N 1.31512 * 119.99838 * 6.10747 * 18 17 16 20 20 Si 1.86799 * 119.99913 * 186.10541 * 18 17 16 21 21 H 1.48504 * 109.47047 * 270.00020 * 20 18 17 22 22 H 1.48497 * 109.47169 * 150.00212 * 20 18 17 23 23 H 1.48496 * 109.47069 * 29.99965 * 20 18 17 24 24 C 1.51267 * 118.29769 * 51.66257 * 17 16 15 25 25 C 1.52965 * 109.41048 * 204.99938 * 13 12 10 26 26 C 1.54629 * 101.79532 * 25.37231 * 10 9 8 27 27 C 1.34415 * 124.35000 * 359.97438 * 8 6 5 28 28 O 1.21229 * 124.93897 * 0.44240 * 27 8 6 29 29 H 1.09003 * 109.47006 * 300.00391 * 1 2 3 30 30 H 1.08998 * 109.47116 * 59.99701 * 1 2 3 31 31 H 1.08995 * 109.47374 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46913 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47337 * 300.00164 * 3 2 1 34 34 H 1.09003 * 109.46781 * 60.00196 * 3 2 1 35 35 H 1.08998 * 109.46626 * 299.99950 * 4 2 1 36 36 H 1.08998 * 109.47116 * 60.00015 * 4 2 1 37 37 H 1.08993 * 109.47386 * 180.02562 * 4 2 1 38 38 H 1.09006 * 110.28329 * 44.00090 * 9 8 6 39 39 H 1.08996 * 110.24405 * 281.98121 * 9 8 6 40 40 H 1.00899 * 111.00251 * 34.13968 * 12 10 9 41 41 H 1.09002 * 109.48096 * 303.68829 * 15 13 12 42 42 H 1.08999 * 109.48327 * 63.70744 * 15 13 12 43 43 H 1.09006 * 109.68870 * 185.52343 * 16 15 13 44 44 H 1.09000 * 109.78417 * 64.81197 * 16 15 13 45 45 H 0.96996 * 120.00278 * 354.36744 * 19 18 17 46 46 H 1.08992 * 109.63061 * 68.11084 * 24 17 16 47 47 H 1.09002 * 109.62202 * 188.68391 * 24 17 16 48 48 H 1.08995 * 109.48524 * 56.31194 * 25 13 12 49 49 H 1.08999 * 109.49329 * 296.27640 * 25 13 12 50 50 H 1.09003 * 110.48750 * 93.89874 * 26 10 9 51 51 H 1.09001 * 110.48553 * 216.40791 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6524 -1.9718 1.3382 7 8 0.9514 -2.5087 0.5042 8 7 2.0682 -2.6653 2.4165 9 6 1.7320 -4.0705 2.6775 10 6 2.7480 -4.5461 3.7397 11 1 3.6202 -5.0001 3.2694 12 7 2.1208 -5.4769 4.6873 13 6 3.1303 -6.3144 5.3488 14 1 3.9331 -6.5371 4.6460 15 6 3.7036 -5.5645 6.5524 16 6 4.8260 -6.4015 7.1854 17 6 4.2718 -7.7708 7.5112 18 6 4.4217 -8.3132 8.7699 19 7 4.9454 -7.5933 9.7379 20 14 3.8809 -10.0704 9.1003 21 1 2.4617 -10.0776 9.5373 22 1 4.7305 -10.6574 10.1674 23 1 4.0207 -10.8730 7.8587 24 6 3.5545 -8.5326 6.4187 25 6 2.4830 -7.6206 5.8119 26 6 3.1233 -3.2172 4.4355 27 6 2.8445 -2.1596 3.3903 28 8 3.2602 -1.0214 3.4262 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7488 -1.2493 36 1 1.6767 -0.2073 -2.1392 37 1 3.1299 -0.7216 -1.2491 38 1 1.8356 -4.6594 1.7661 39 1 0.7163 -4.1496 3.0650 40 1 1.4239 -6.0447 4.2289 41 1 4.1066 -4.6061 6.2253 42 1 2.9145 -5.3959 7.2852 43 1 5.1723 -5.9197 8.0999 44 1 5.6542 -6.4991 6.4835 45 1 5.3009 -6.7109 9.5484 46 1 4.2670 -8.8240 5.6471 47 1 3.0835 -9.4206 6.8403 48 1 2.0210 -8.1195 4.9600 49 1 1.7227 -7.4038 6.5623 50 1 2.4999 -3.0579 5.3154 51 1 4.1779 -3.2154 4.7109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171688603.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:44 Heat of formation + Delta-G solvation = -139.615662 kcal Electronic energy + Delta-G solvation = -30522.942242 eV Core-core repulsion = 26421.237273 eV Total energy + Delta-G solvation = -4101.704970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.89676 -41.14473 -39.38505 -38.57526 -37.50586 -35.87867 -35.12813 -33.68057 -31.52481 -31.41371 -29.05770 -28.43401 -28.37449 -27.48785 -25.11963 -23.96669 -22.96768 -22.56585 -21.91686 -20.92869 -20.34605 -19.21246 -18.44922 -18.37270 -17.85966 -17.04034 -16.75471 -16.49532 -16.15463 -15.89144 -15.68556 -15.46592 -15.30223 -15.13684 -14.86178 -14.58680 -14.49976 -14.28857 -14.05203 -13.45087 -13.22173 -13.19710 -13.16663 -13.02466 -12.99757 -12.96669 -12.76638 -12.63171 -12.58674 -12.42785 -12.27089 -11.93693 -11.76395 -11.76122 -11.57641 -11.52804 -11.22191 -11.18392 -10.95896 -10.83414 -10.46623 -10.15602 -9.45316 -8.51260 -6.08243 0.51766 0.67744 1.54426 1.61417 1.75004 1.77613 2.45347 2.60086 2.84406 3.14011 3.23927 3.38181 3.63252 3.71033 3.83395 3.86113 4.02355 4.16049 4.25610 4.29244 4.44655 4.46829 4.56098 4.58301 4.62034 4.65175 4.69854 4.71212 4.77732 4.79217 4.80200 4.86884 5.01930 5.06601 5.07649 5.16814 5.19281 5.19896 5.20373 5.25916 5.27016 5.29849 5.39287 5.47837 5.65283 5.86079 6.08478 6.16812 6.32447 6.50171 6.57994 6.79013 6.84083 7.61730 8.86101 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.032725 B = 0.002180 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.405651 B =12842.811740 C =13390.377138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.113 3.887 3 C -0.136 4.136 4 C -0.178 4.178 5 O -0.352 6.352 6 C 0.659 3.341 7 O -0.544 6.544 8 N -0.560 5.560 9 C 0.114 3.886 10 C 0.087 3.913 11 H 0.083 0.917 12 N -0.670 5.670 13 C 0.114 3.886 14 H 0.040 0.960 15 C -0.084 4.084 16 C -0.009 4.009 17 C -0.569 4.569 18 C -0.025 4.025 19 N -0.950 5.950 20 Si 1.098 2.902 21 H -0.274 1.274 22 H -0.299 1.299 23 H -0.259 1.259 24 C -0.014 4.014 25 C -0.104 4.104 26 C -0.140 4.140 27 C 0.525 3.475 28 O -0.509 6.509 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.359 0.641 41 H 0.050 0.950 42 H 0.036 0.964 43 H 0.007 0.993 44 H 0.000 1.000 45 H 0.258 0.742 46 H 0.014 0.986 47 H 0.032 0.968 48 H 0.068 0.932 49 H 0.049 0.951 50 H 0.127 0.873 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.491 11.523 -22.232 26.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.078 3.922 3 C -0.193 4.193 4 C -0.235 4.235 5 O -0.266 6.266 6 C 0.416 3.584 7 O -0.432 6.432 8 N -0.310 5.310 9 C -0.006 4.006 10 C -0.024 4.024 11 H 0.101 0.899 12 N -0.304 5.304 13 C 0.005 3.995 14 H 0.058 0.942 15 C -0.122 4.122 16 C -0.047 4.047 17 C -0.589 4.589 18 C -0.222 4.222 19 N -0.590 5.590 20 Si 0.922 3.078 21 H -0.200 1.200 22 H -0.226 1.226 23 H -0.183 1.183 24 C -0.052 4.052 25 C -0.142 4.142 26 C -0.180 4.180 27 C 0.316 3.684 28 O -0.381 6.381 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.130 0.870 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.181 0.819 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.026 0.974 44 H 0.019 0.981 45 H 0.070 0.930 46 H 0.032 0.968 47 H 0.051 0.949 48 H 0.087 0.913 49 H 0.068 0.932 50 H 0.145 0.855 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.708 11.455 -20.912 25.744 hybrid contribution 0.830 0.749 -1.231 1.663 sum -8.878 12.203 -22.142 26.796 Atomic orbital electron populations 1.22474 0.93108 1.03974 1.03959 1.22684 0.95270 0.92900 0.81381 1.21885 1.02195 0.90835 1.04342 1.22474 1.01556 1.02324 0.97150 1.86593 1.70423 1.22041 1.47505 1.18169 0.77859 0.81355 0.80990 1.90908 1.39308 1.70763 1.42212 1.46379 1.48719 1.15563 1.20353 1.22629 1.01066 0.76267 1.00666 1.22393 0.96381 0.92940 0.90709 0.89911 1.60467 1.15504 1.22700 1.31725 1.21230 0.92139 0.91692 0.94460 0.94205 1.21520 0.97371 0.96862 0.96487 1.19591 0.94520 0.95553 0.95080 1.21640 1.36873 1.02293 0.98076 1.26982 0.95509 1.07309 0.92428 1.70896 1.40634 1.12865 1.34595 0.83190 0.76621 0.72024 0.75962 1.19979 1.22620 1.18347 1.19666 0.94652 0.95285 0.95592 1.21648 0.98041 0.94988 0.99518 1.22644 1.05821 0.91995 0.97586 1.21869 0.75372 0.88595 0.82607 1.90764 1.50666 1.20437 1.76246 0.92306 0.88198 0.91484 0.91825 0.87044 0.91836 0.91482 0.88197 0.92287 0.86933 0.87074 0.81917 0.93109 0.94538 0.97400 0.98139 0.93014 0.96797 0.94944 0.91311 0.93202 0.85463 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 8.37 71.98 0.60 -2.35 16 2 C 0.11 2.12 1.13 -10.79 -0.01 2.11 16 3 C -0.14 -1.89 8.85 71.98 0.64 -1.25 16 4 C -0.18 -2.93 8.37 71.98 0.60 -2.33 16 5 O -0.35 -9.21 8.31 -48.33 -0.40 -9.61 16 6 C 0.66 16.94 7.81 129.79 1.01 17.95 16 7 O -0.54 -14.17 12.10 19.99 0.24 -13.93 16 8 N -0.56 -12.94 2.99 -881.20 -2.63 -15.58 16 9 C 0.11 1.89 6.33 86.82 0.55 2.44 16 10 C 0.09 1.63 3.43 45.98 0.16 1.79 16 11 H 0.08 1.50 7.50 -2.39 -0.02 1.48 16 12 N -0.67 -14.62 6.14 -464.20 -2.85 -17.47 16 13 C 0.11 3.44 2.39 44.89 0.11 3.55 16 14 H 0.04 1.22 7.47 -2.39 -0.02 1.20 16 15 C -0.08 -3.16 5.34 30.80 0.16 -3.00 16 16 C -0.01 -0.44 5.99 30.25 0.18 -0.26 16 17 C -0.57 -28.64 5.50 -16.17 -0.09 -28.73 16 18 C -0.02 -1.36 5.46 84.65 0.46 -0.90 16 19 N -0.95 -57.09 13.66 21.45 0.29 -56.80 16 20 Si 1.10 48.54 27.47 68.60 1.88 50.42 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 23 H -0.26 -10.23 6.73 99.48 0.67 -9.56 16 24 C -0.01 -0.57 5.55 30.11 0.17 -0.40 16 25 C -0.10 -3.43 5.24 30.66 0.16 -3.26 16 26 C -0.14 -3.08 5.10 30.59 0.16 -2.92 16 27 C 0.53 13.61 7.95 87.90 0.70 14.31 16 28 O -0.51 -16.75 16.49 16.62 0.27 -16.48 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.39 5.88 -2.39 -0.01 1.37 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.38 5.88 -2.39 -0.01 1.36 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.11 1.58 8.11 -2.38 -0.02 1.56 16 39 H 0.11 1.62 8.05 -2.39 -0.02 1.60 16 40 H 0.36 6.18 8.02 -89.70 -0.72 5.46 16 41 H 0.05 1.68 5.92 -2.39 -0.01 1.67 16 42 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.01 0.40 5.80 -2.38 -0.01 0.38 16 44 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 45 H 0.26 15.65 6.36 -92.71 -0.59 15.06 16 46 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.03 1.31 5.03 -2.39 -0.01 1.30 16 48 H 0.07 1.78 8.05 -2.39 -0.02 1.77 16 49 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.13 2.89 8.08 -2.39 -0.02 2.87 16 51 H 0.11 2.50 7.43 -2.39 -0.02 2.48 16 Total: -1.00 -68.56 388.02 2.73 -65.83 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.36 Total: 16.87 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 5.56 Total: -3.26 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -5.19 Total: -89.84 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: 0.11 Total: -40.02 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 1.88 Total: 50.42 kcal Total: -68.56 2.73 -65.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171688603.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.785 kcal (2) G-P(sol) polarization free energy of solvation -68.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds