Wall clock time and date at job start Tue Mar 31 2020 22:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99862 * 2 1 4 4 O 1.20827 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00237 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47686 * 179.97438 * 5 3 2 7 7 C 1.34775 * 120.00475 * 179.97438 * 6 5 3 8 8 O 1.21287 * 119.99842 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00125 * 180.02562 * 7 6 5 10 10 H 1.08994 * 110.36861 * 57.65466 * 9 7 6 11 11 C 1.54378 * 110.51433 * 295.23267 * 9 7 6 12 12 C 1.54254 * 105.06391 * 217.32001 * 11 9 7 13 13 C 1.54379 * 105.05840 * 359.97438 * 12 11 9 14 14 N 1.48555 * 104.59756 * 23.85336 * 13 12 11 15 15 C 1.46894 * 111.00166 * 200.95629 * 14 13 12 16 16 C 1.52997 * 109.47515 * 295.42009 * 15 14 13 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.47328 * 60.00126 * 17 16 15 19 19 C 1.50699 * 109.47235 * 59.99852 * 18 17 16 20 20 H 1.07995 * 119.99623 * 359.97438 * 19 18 17 21 21 C 1.37873 * 119.99861 * 180.02562 * 19 18 17 22 22 N 1.31522 * 120.00244 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99980 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47197 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47074 * 119.99839 * 23 21 19 26 26 H 1.48505 * 109.46997 * 239.99833 * 23 21 19 27 27 C 1.53002 * 109.46891 * 299.99597 * 18 17 16 28 28 C 1.52997 * 109.46978 * 60.00410 * 27 18 17 29 29 H 1.09000 * 109.47479 * 59.99659 * 1 2 3 30 30 H 1.09000 * 109.46882 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46923 * 300.00045 * 1 2 3 32 32 H 1.09008 * 109.47081 * 59.99552 * 5 3 2 33 33 H 1.09001 * 109.46981 * 300.00421 * 5 3 2 34 34 H 0.97002 * 119.99373 * 0.02562 * 6 5 3 35 35 H 1.09006 * 110.32222 * 336.22040 * 11 9 7 36 36 H 1.09005 * 110.32249 * 98.42034 * 11 9 7 37 37 H 1.09001 * 110.32554 * 118.89654 * 12 11 9 38 38 H 1.09006 * 110.32551 * 241.10511 * 12 11 9 39 39 H 1.09004 * 110.41347 * 265.06957 * 13 12 11 40 40 H 1.09001 * 110.40951 * 142.63390 * 13 12 11 41 41 H 1.08998 * 109.46828 * 55.42573 * 15 14 13 42 42 H 1.09002 * 109.47153 * 59.99762 * 16 15 14 43 43 H 1.09001 * 109.46832 * 299.99953 * 16 15 14 44 44 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 45 45 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 46 46 H 1.09004 * 109.47108 * 179.97438 * 18 17 16 47 47 H 0.96992 * 120.00038 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.47097 * 180.02562 * 27 18 17 49 49 H 1.09001 * 109.47142 * 300.00176 * 27 18 17 50 50 H 1.09001 * 109.47375 * 59.99908 * 28 27 18 51 51 H 1.09000 * 109.47140 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 5.2920 2.9952 -0.0011 8 8 6.1274 2.1158 -0.0012 9 6 5.7193 4.4403 -0.0011 10 1 5.3026 4.9590 0.8622 11 6 5.2815 5.1339 -1.3089 12 6 6.4354 6.0962 -1.6580 13 6 7.4731 5.9035 -0.5313 14 7 7.2011 4.5430 -0.0004 15 6 7.7391 4.3907 1.3579 16 6 9.2645 4.5015 1.3177 17 6 9.8249 4.3422 2.7325 18 6 9.4275 2.9728 3.2872 19 6 9.9867 1.8901 2.4005 20 1 10.5671 2.1526 1.5284 21 6 9.7565 0.5647 2.7022 22 7 9.0493 0.2451 3.7641 23 14 10.4503 -0.7774 1.6036 24 1 11.2037 -0.1596 0.4830 25 1 11.3608 -1.6435 2.3948 26 1 9.3372 -1.5961 1.0592 27 6 7.9021 2.8620 3.3274 28 6 7.3417 3.0212 1.9127 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.9557 0.7809 -0.8908 33 1 3.9564 0.7806 0.8891 34 1 3.3136 3.3831 -0.0006 35 1 5.1493 4.3978 -2.1019 36 1 4.3582 5.6914 -1.1511 37 1 6.8697 5.8325 -2.6224 38 1 6.0786 7.1261 -1.6715 39 1 7.3307 6.6515 0.2487 40 1 8.4849 5.9597 -0.9328 41 1 7.3346 5.1740 1.9989 42 1 9.5476 5.4770 0.9221 43 1 9.6690 3.7182 0.6768 44 1 10.9116 4.4216 2.7039 45 1 9.4205 5.1253 3.3738 46 1 9.8272 2.8591 4.2950 47 1 8.8871 -0.6874 3.9761 48 1 7.6190 1.8865 3.7230 49 1 7.4977 3.6451 3.9688 50 1 7.7461 2.2381 1.2714 51 1 6.2550 2.9418 1.9413 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173337061.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:28 Heat of formation + Delta-G solvation = -133.815601 kcal Electronic energy + Delta-G solvation = -31579.710529 eV Core-core repulsion = 27478.257069 eV Total energy + Delta-G solvation = -4101.453460 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.92235 -41.37100 -39.53628 -38.23037 -37.76842 -35.63872 -34.58977 -32.70447 -31.66642 -30.92793 -29.52282 -29.13956 -27.60774 -26.62865 -24.05891 -23.39755 -22.53597 -22.03469 -21.31131 -20.98183 -20.45545 -19.03925 -18.46267 -17.88273 -17.78555 -17.48559 -17.20922 -16.78065 -16.55236 -15.95150 -15.61975 -15.51594 -15.00571 -14.87591 -14.72967 -14.57588 -14.30206 -14.17277 -14.03290 -13.76793 -13.65352 -13.12012 -13.00554 -12.91084 -12.85076 -12.64743 -12.51159 -12.38146 -12.35291 -12.12034 -11.95968 -11.90543 -11.82313 -11.77450 -11.54389 -11.31127 -10.90365 -10.75310 -10.57312 -10.40079 -10.26076 -10.12987 -9.31387 -8.00267 -6.07839 0.91063 1.28294 1.37324 1.41819 1.50831 1.69047 2.21936 2.48367 3.09124 3.29415 3.51846 3.63501 3.66346 3.99408 4.08663 4.13387 4.17040 4.22879 4.24974 4.31366 4.32401 4.36205 4.49388 4.62038 4.66737 4.68449 4.77329 4.82121 4.88822 4.89768 4.96057 4.98544 5.07875 5.09342 5.12683 5.17478 5.22114 5.26289 5.33192 5.42561 5.59745 5.66243 5.78126 5.87599 5.95581 6.06750 6.23494 6.30972 6.43727 6.50315 6.52519 7.00335 7.31257 7.57265 9.05068 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.008989 B = 0.004269 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.133465 B = 6557.748979 C = 8703.907911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.473 3.527 4 O -0.523 6.523 5 C 0.127 3.873 6 N -0.720 5.720 7 C 0.518 3.482 8 O -0.537 6.537 9 C 0.046 3.954 10 H 0.085 0.915 11 C -0.106 4.106 12 C -0.113 4.113 13 C 0.029 3.971 14 N -0.506 5.506 15 C 0.094 3.906 16 C -0.085 4.085 17 C -0.101 4.101 18 C 0.040 3.960 19 C -0.498 4.498 20 H 0.048 0.952 21 C 0.016 3.984 22 N -0.919 5.919 23 Si 0.937 3.063 24 H -0.270 1.270 25 H -0.280 1.280 26 H -0.289 1.289 27 C -0.106 4.106 28 C -0.065 4.065 29 H 0.070 0.930 30 H 0.131 0.869 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.416 0.584 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.037 0.963 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.049 0.951 45 H 0.051 0.949 46 H -0.011 1.011 47 H 0.255 0.745 48 H 0.052 0.948 49 H 0.021 0.979 50 H 0.058 0.942 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.384 9.666 -11.106 22.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.316 3.684 4 O -0.412 6.412 5 C 0.002 3.998 6 N -0.379 5.379 7 C 0.305 3.695 8 O -0.412 6.412 9 C -0.066 4.066 10 H 0.102 0.898 11 C -0.144 4.144 12 C -0.151 4.151 13 C -0.098 4.098 14 N -0.231 5.231 15 C -0.014 4.014 16 C -0.123 4.123 17 C -0.139 4.139 18 C 0.022 3.978 19 C -0.536 4.536 20 H 0.066 0.934 21 C -0.181 4.181 22 N -0.560 5.560 23 Si 0.764 3.236 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.216 1.216 27 C -0.145 4.145 28 C -0.102 4.102 29 H 0.088 0.912 30 H 0.150 0.850 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.122 0.878 34 H 0.255 0.745 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.055 0.945 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.007 0.993 47 H 0.064 0.936 48 H 0.071 0.929 49 H 0.039 0.961 50 H 0.077 0.923 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -16.809 8.727 -11.345 22.078 hybrid contribution -0.375 -0.532 0.590 0.878 sum -17.184 8.195 -10.755 21.866 Atomic orbital electron populations 1.23645 0.73771 1.06012 1.03004 1.86498 1.25740 1.31904 1.83366 1.23394 0.91516 0.81829 0.71618 1.90642 1.67150 1.36795 1.46606 1.20587 0.87063 0.85627 1.06569 1.45623 1.07698 1.07231 1.77368 1.20740 0.81294 0.92092 0.75403 1.90862 1.51788 1.50974 1.47581 1.22599 0.91066 0.91470 1.01477 0.89753 1.22303 1.00018 0.98399 0.93702 1.22284 0.94298 1.00276 0.98266 1.23220 1.00936 0.88180 0.97465 1.65063 1.07470 1.28445 1.22123 1.21672 0.95739 0.96347 0.87615 1.21289 0.93714 1.00416 0.96904 1.21464 0.99236 0.97054 0.96134 1.18671 0.92578 0.92469 0.94117 1.21380 1.31230 0.91341 1.09653 0.93379 1.25539 0.95835 1.00550 0.96208 1.70014 1.41180 1.17296 1.27522 0.85814 0.78069 0.80124 0.79549 1.19465 1.20548 1.21550 1.21458 0.97991 0.99404 0.95624 1.21383 0.96136 0.96810 0.95908 0.91166 0.85048 0.91619 0.86378 0.87811 0.74499 0.91256 0.87570 0.90742 0.88321 0.92766 0.89994 0.94513 0.91424 0.93411 0.93224 0.92990 0.99323 0.93623 0.92942 0.96068 0.92339 0.95790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.91 10.57 -51.39 -0.54 -7.45 16 3 C 0.47 10.16 8.03 71.24 0.57 10.74 16 4 O -0.52 -12.54 15.42 21.96 0.34 -12.20 16 5 C 0.13 2.97 6.27 85.63 0.54 3.51 16 6 N -0.72 -17.68 5.51 -466.78 -2.57 -20.25 16 7 C 0.52 16.33 5.26 87.66 0.46 16.79 16 8 O -0.54 -22.83 12.78 -3.05 -0.04 -22.87 16 9 C 0.05 1.22 2.40 44.32 0.11 1.32 16 10 H 0.08 2.04 7.97 -2.39 -0.02 2.03 16 11 C -0.11 -1.92 6.53 31.49 0.21 -1.72 16 12 C -0.11 -1.91 7.00 31.49 0.22 -1.69 16 13 C 0.03 0.68 5.53 86.45 0.48 1.16 16 14 N -0.51 -16.23 4.63 -836.11 -3.87 -20.10 16 15 C 0.09 3.54 1.71 44.92 0.08 3.62 16 16 C -0.09 -3.34 4.94 30.59 0.15 -3.19 16 17 C -0.10 -4.28 5.41 30.59 0.17 -4.12 16 18 C 0.04 2.11 2.59 -11.54 -0.03 2.08 16 19 C -0.50 -28.70 6.61 25.60 0.17 -28.53 16 20 H 0.05 2.79 6.71 -2.91 -0.02 2.77 16 21 C 0.02 0.95 5.30 84.65 0.45 1.40 16 22 N -0.92 -56.22 11.32 21.45 0.24 -55.98 16 23 Si 0.94 47.50 29.54 68.60 2.03 49.53 16 24 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 25 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 27 C -0.11 -5.40 5.24 30.59 0.16 -5.24 16 28 C -0.06 -2.99 3.34 30.60 0.10 -2.89 16 29 H 0.07 0.80 8.13 -2.39 -0.02 0.78 16 30 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 32 H 0.12 2.63 8.14 -2.38 -0.02 2.61 16 33 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.42 8.47 7.44 -92.71 -0.69 7.78 16 35 H 0.07 1.35 7.86 -2.38 -0.02 1.34 16 36 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.05 1.14 7.90 -2.38 -0.02 1.12 16 40 H 0.08 1.94 7.70 -2.39 -0.02 1.92 16 41 H 0.04 1.29 7.97 -2.39 -0.02 1.27 16 42 H 0.07 2.18 7.07 -2.39 -0.02 2.16 16 43 H 0.05 2.18 6.62 -2.39 -0.02 2.16 16 44 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 46 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 47 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 48 H 0.05 3.06 6.07 -2.39 -0.01 3.05 16 49 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.06 3.25 5.78 -2.39 -0.01 3.24 16 51 H 0.02 1.05 5.42 -2.39 -0.01 1.04 16 Total: -1.00 -75.46 388.27 0.84 -74.62 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.24 Total: 19.91 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 5.02 Total: -5.21 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -6.20 Total: -96.33 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -0.24 Total: -42.52 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -75.46 0.84 -74.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337061.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.196 kcal (2) G-P(sol) polarization free energy of solvation -75.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds