Wall clock time and date at job start Tue Mar 31 2020 21:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 117.00160 * 2 1 4 4 O 1.20829 * 119.99451 * 359.97438 * 3 2 1 5 5 C 1.50690 * 120.00166 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.78841 * 355.80909 * 5 3 2 7 7 C 1.53241 * 109.62684 * 235.32527 * 5 3 2 8 8 N 1.46901 * 109.34384 * 186.46261 * 7 5 3 9 9 C 1.46891 * 111.00075 * 187.25406 * 8 7 5 10 10 C 1.52999 * 109.47312 * 299.99621 * 9 8 7 11 11 C 1.52997 * 109.47331 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47247 * 59.99569 * 11 10 9 13 13 C 1.50704 * 109.46994 * 60.00584 * 12 11 10 14 14 H 1.08003 * 119.99564 * 240.00025 * 13 12 11 15 15 C 1.37879 * 119.99906 * 59.99715 * 13 12 11 16 16 N 1.31516 * 120.00365 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99616 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47306 * 60.00044 * 17 15 13 19 19 H 1.48496 * 109.47039 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47492 * 299.99841 * 17 15 13 21 21 C 1.53000 * 109.47360 * 300.00055 * 12 11 10 22 22 C 1.53001 * 109.46665 * 60.00215 * 21 12 11 23 23 C 1.46897 * 111.26856 * 63.09794 * 8 7 5 24 24 C 1.53235 * 109.34218 * 296.90180 * 23 8 7 25 25 N 1.47075 * 108.52443 * 53.83018 * 24 23 8 26 26 C 1.34773 * 120.88387 * 128.83187 * 25 24 23 27 27 C 1.50704 * 120.00042 * 3.93797 * 26 25 24 28 28 O 1.21278 * 120.00079 * 183.92601 * 26 25 24 29 29 H 1.08990 * 109.47253 * 300.00142 * 1 2 3 30 30 H 1.09004 * 109.46941 * 59.99983 * 1 2 3 31 31 H 1.08996 * 109.46943 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.49504 * 306.41810 * 7 5 3 33 33 H 1.08999 * 109.49318 * 66.46996 * 7 5 3 34 34 H 1.09001 * 109.47297 * 59.99955 * 9 8 7 35 35 H 1.09003 * 109.46743 * 300.00149 * 10 9 8 36 36 H 1.09000 * 109.47135 * 60.00348 * 10 9 8 37 37 H 1.09001 * 109.46882 * 300.00091 * 11 10 9 38 38 H 1.09003 * 109.47230 * 180.02562 * 11 10 9 39 39 H 1.09006 * 109.46847 * 179.97438 * 12 11 10 40 40 H 0.96997 * 119.99755 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.46814 * 299.99797 * 21 12 11 42 42 H 1.09005 * 109.46750 * 179.97438 * 21 12 11 43 43 H 1.09003 * 109.46909 * 179.97438 * 22 21 12 44 44 H 1.09001 * 109.47393 * 59.99645 * 22 21 12 45 45 H 1.09000 * 109.49202 * 56.86444 * 23 8 7 46 46 H 1.09005 * 109.48959 * 176.91128 * 23 8 7 47 47 H 1.09005 * 109.62368 * 173.54069 * 24 23 8 48 48 H 1.09006 * 109.62700 * 294.11752 * 24 23 8 49 49 H 1.09003 * 109.47361 * 59.99023 * 27 26 25 50 50 H 1.08997 * 109.47226 * 179.97438 * 27 26 25 51 51 H 1.09000 * 109.46748 * 299.99606 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9884 0.2727 0.0740 7 6 4.0378 2.1216 1.1864 8 7 5.4899 2.3238 1.0936 9 6 6.0078 2.9831 2.2998 10 6 5.3325 4.3459 2.4660 11 6 5.8724 5.0328 3.7219 12 6 7.3842 5.2257 3.5878 13 6 7.6765 6.0815 2.3823 14 1 8.2832 5.6922 1.5780 15 6 7.1693 7.3614 2.3061 16 7 6.4309 7.8355 3.2857 17 14 7.5310 8.4218 0.8115 18 1 7.0065 7.7550 -0.4073 19 1 6.8752 9.7444 0.9725 20 1 8.9983 8.6091 0.6807 21 6 8.0596 3.8629 3.4217 22 6 7.5197 3.1760 2.1657 23 6 5.8464 3.0801 -0.1142 24 6 5.4491 2.2726 -1.3544 25 7 4.0271 1.9139 -1.2426 26 6 3.1692 2.1637 -2.2515 27 6 3.6782 2.7371 -3.5489 28 8 1.9876 1.9268 -2.1154 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.5341 3.0881 1.1667 33 1 3.8006 1.6068 2.1174 34 1 5.7961 2.3639 3.1716 35 1 5.5442 4.9649 1.5941 36 1 4.2554 4.2084 2.5612 37 1 5.6610 4.4138 4.5939 38 1 5.3909 6.0036 3.8405 39 1 7.7688 5.7156 4.4825 40 1 6.0738 8.7358 3.2319 41 1 7.8482 3.2440 4.2937 42 1 9.1366 4.0005 3.3258 43 1 8.0011 2.2053 2.0471 44 1 7.7310 3.7950 1.2937 45 1 5.3176 4.0332 -0.1158 46 1 6.9214 3.2606 -0.1261 47 1 5.6054 2.8753 -2.2492 48 1 6.0521 1.3663 -1.4100 49 1 4.4077 2.0553 -3.9862 50 1 2.8452 2.8691 -4.2394 51 1 4.1500 3.7013 -3.3596 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173339305.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:18 Heat of formation + Delta-G solvation = -105.868281 kcal Electronic energy + Delta-G solvation = -32251.257462 eV Core-core repulsion = 28151.015889 eV Total energy + Delta-G solvation = -4100.241573 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.22325 -39.47750 -38.89600 -36.83447 -36.15287 -34.41322 -32.39369 -31.91418 -30.12978 -29.51027 -28.83497 -27.94859 -26.27048 -24.80047 -24.18570 -22.33819 -21.69684 -21.27649 -20.16056 -19.04698 -18.38035 -17.81180 -17.09445 -16.71715 -16.04501 -15.80779 -15.67082 -15.41687 -15.19954 -14.79061 -14.59943 -14.22168 -13.92047 -13.72511 -13.43661 -13.25001 -13.18753 -12.93494 -12.71051 -12.51585 -12.27949 -12.19999 -11.92360 -11.80680 -11.69850 -11.34137 -11.28963 -11.13017 -10.97894 -10.90099 -10.68888 -10.65201 -10.24647 -10.20467 -10.00133 -9.79151 -9.72280 -9.23686 -9.03161 -8.90859 -8.68483 -8.33328 -7.90406 -5.99121 -4.04133 2.13714 2.40479 2.70707 3.03108 3.26352 3.33414 3.34270 4.07657 4.38848 4.40637 4.72929 4.79752 4.85973 5.01852 5.03715 5.13115 5.14031 5.19418 5.24244 5.28821 5.31169 5.36690 5.53068 5.53917 5.61159 5.69934 5.76956 5.90009 5.98469 6.05300 6.16341 6.26765 6.34702 6.44854 6.47845 6.53452 6.64766 6.71788 6.81239 6.97736 7.05886 7.13955 7.21977 7.36199 7.40192 7.53626 7.71715 7.86180 7.91987 8.05802 8.13769 8.45799 8.98266 9.59130 11.06568 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013769 B = 0.003717 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.104093 B = 7531.696983 C = 8171.229392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.363 6.363 3 C 0.478 3.522 4 O -0.487 6.487 5 C 0.161 3.839 6 H 0.108 0.892 7 C 0.051 3.949 8 N -0.529 5.529 9 C 0.092 3.908 10 C -0.131 4.131 11 C -0.104 4.104 12 C 0.044 3.956 13 C -0.503 4.503 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.882 3.118 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.278 1.278 21 C -0.106 4.106 22 C -0.098 4.098 23 C 0.028 3.972 24 C 0.115 3.885 25 N -0.604 5.604 26 C 0.508 3.492 27 C -0.169 4.169 28 O -0.527 6.527 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.032 0.968 37 H 0.013 0.987 38 H 0.089 0.911 39 H 0.024 0.976 40 H 0.259 0.741 41 H 0.034 0.966 42 H 0.048 0.952 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.082 0.918 49 H 0.090 0.910 50 H 0.092 0.908 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 -15.226 -9.254 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.280 6.280 3 C 0.320 3.680 4 O -0.372 6.372 5 C 0.056 3.944 6 H 0.126 0.874 7 C -0.078 4.078 8 N -0.253 5.253 9 C -0.015 4.015 10 C -0.169 4.169 11 C -0.142 4.142 12 C 0.025 3.975 13 C -0.541 4.541 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.710 3.290 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.144 4.144 22 C -0.136 4.136 23 C -0.101 4.101 24 C -0.007 4.007 25 N -0.341 5.341 26 C 0.298 3.702 27 C -0.228 4.228 28 O -0.404 6.404 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.032 0.968 38 H 0.108 0.892 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.121 0.879 47 H 0.111 0.889 48 H 0.100 0.900 49 H 0.109 0.891 50 H 0.110 0.890 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.731 -15.343 -9.182 18.496 hybrid contribution -0.413 1.607 -0.745 1.819 sum -5.144 -13.736 -9.927 17.711 Atomic orbital electron populations 1.23136 0.76440 1.02905 1.02532 1.86401 1.23353 1.33408 1.84790 1.22663 0.90742 0.81893 0.72740 1.90658 1.66416 1.36175 1.43986 1.20747 0.87976 0.99407 0.86255 0.87442 1.22295 0.90213 0.99490 0.95805 1.62256 1.10151 1.49398 1.03446 1.21783 0.95835 0.93915 0.89987 1.22002 0.96757 0.96057 1.02122 1.21450 0.99868 1.00227 0.92678 1.18685 0.91305 0.90369 0.97110 1.21087 1.31057 0.97809 1.04125 0.92810 1.24937 0.95343 0.97788 0.95831 1.69852 1.34610 1.16708 1.31662 0.86822 0.78476 0.80011 0.83652 1.20461 1.21442 1.20348 1.21541 0.99240 0.98371 0.95271 1.21512 0.92934 0.98864 1.00263 1.22635 1.03006 0.95399 0.89025 1.22050 0.79102 1.00349 0.99220 1.48212 1.10364 1.61395 1.14175 1.21000 0.85891 0.77683 0.85666 1.21903 1.03975 1.02610 0.94288 1.90737 1.16335 1.52557 1.80787 0.92286 0.91798 0.88638 0.92248 0.89272 0.90949 0.90846 0.94977 0.96786 0.89241 0.95831 0.93084 0.94730 0.93336 0.93554 0.90961 0.93146 0.87923 0.88870 0.89986 0.89104 0.88962 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.57 16 2 O -0.36 -5.16 10.56 -41.35 -0.44 -5.59 16 3 C 0.48 7.62 4.52 36.00 0.16 7.78 16 4 O -0.49 -9.38 14.36 -26.92 -0.39 -9.77 16 5 C 0.16 2.19 3.51 -68.65 -0.24 1.95 16 6 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 7 C 0.05 0.74 4.23 -3.70 -0.02 0.72 16 8 N -0.53 -7.53 4.65 -226.34 -1.05 -8.58 16 9 C 0.09 1.52 2.29 -67.71 -0.16 1.36 16 10 C -0.13 -2.59 4.30 -26.73 -0.12 -2.71 16 11 C -0.10 -2.33 5.23 -26.73 -0.14 -2.47 16 12 C 0.04 1.02 2.59 -91.77 -0.24 0.78 16 13 C -0.50 -12.63 6.61 -34.44 -0.23 -12.86 16 14 H 0.05 1.32 6.71 -52.48 -0.35 0.97 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -24.65 11.32 55.43 0.63 -24.02 16 17 Si 0.88 20.45 29.54 -169.99 -5.02 15.43 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.11 -2.03 5.41 -26.73 -0.14 -2.18 16 22 C -0.10 -1.65 4.62 -26.73 -0.12 -1.78 16 23 C 0.03 0.37 4.81 -3.70 -0.02 0.36 16 24 C 0.11 1.17 6.49 -3.61 -0.02 1.15 16 25 N -0.60 -7.68 3.01 -166.24 -0.50 -8.18 16 26 C 0.51 6.93 7.66 -10.98 -0.08 6.85 16 27 C -0.17 -1.50 8.73 36.01 0.31 -1.19 16 28 O -0.53 -9.27 12.76 -21.20 -0.27 -9.55 16 29 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 30 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.03 6.45 -51.93 -0.33 0.69 16 33 H 0.09 1.19 8.11 -51.93 -0.42 0.77 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.63 5.74 -51.93 -0.30 1.33 16 36 H 0.03 0.63 6.57 -51.93 -0.34 0.29 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 39 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 1.29 4.66 -51.93 -0.24 1.05 16 45 H 0.05 0.81 6.79 -51.93 -0.35 0.45 16 46 H 0.10 1.35 5.83 -51.93 -0.30 1.05 16 47 H 0.09 0.73 6.04 -51.93 -0.31 0.42 16 48 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 50 H 0.09 0.82 8.12 -51.93 -0.42 0.39 16 51 H 0.09 0.74 7.50 -51.93 -0.39 0.35 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -31.87 378.96 -9.70 -41.57 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -8.29 Total: 2.11 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -0.08 Total: 0.86 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: -0.93 Total: -40.78 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -1.09 Total: -24.90 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.87 -9.70 -41.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339305.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.300 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds