Wall clock time and date at job start Tue Mar 31 2020 21:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 117.00160 * 2 1 4 4 O 1.20829 * 119.99451 * 359.97438 * 3 2 1 5 5 C 1.50690 * 120.00166 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.78841 * 355.80909 * 5 3 2 7 7 C 1.53241 * 109.62684 * 235.32527 * 5 3 2 8 8 N 1.46901 * 109.34384 * 186.46261 * 7 5 3 9 9 C 1.46891 * 111.00075 * 187.25406 * 8 7 5 10 10 C 1.52999 * 109.47312 * 299.99621 * 9 8 7 11 11 C 1.52997 * 109.47331 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47247 * 59.99569 * 11 10 9 13 13 C 1.50704 * 109.46994 * 60.00584 * 12 11 10 14 14 H 1.08003 * 119.99564 * 240.00025 * 13 12 11 15 15 C 1.37879 * 119.99906 * 59.99715 * 13 12 11 16 16 N 1.31516 * 120.00365 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99616 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47306 * 60.00044 * 17 15 13 19 19 H 1.48496 * 109.47039 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47492 * 299.99841 * 17 15 13 21 21 C 1.53000 * 109.47360 * 300.00055 * 12 11 10 22 22 C 1.53001 * 109.46665 * 60.00215 * 21 12 11 23 23 C 1.46897 * 111.26856 * 63.09794 * 8 7 5 24 24 C 1.53235 * 109.34218 * 296.90180 * 23 8 7 25 25 N 1.47075 * 108.52443 * 53.83018 * 24 23 8 26 26 C 1.34773 * 120.88387 * 128.83187 * 25 24 23 27 27 C 1.50704 * 120.00042 * 3.93797 * 26 25 24 28 28 O 1.21278 * 120.00079 * 183.92601 * 26 25 24 29 29 H 1.08990 * 109.47253 * 300.00142 * 1 2 3 30 30 H 1.09004 * 109.46941 * 59.99983 * 1 2 3 31 31 H 1.08996 * 109.46943 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.49504 * 306.41810 * 7 5 3 33 33 H 1.08999 * 109.49318 * 66.46996 * 7 5 3 34 34 H 1.09001 * 109.47297 * 59.99955 * 9 8 7 35 35 H 1.09003 * 109.46743 * 300.00149 * 10 9 8 36 36 H 1.09000 * 109.47135 * 60.00348 * 10 9 8 37 37 H 1.09001 * 109.46882 * 300.00091 * 11 10 9 38 38 H 1.09003 * 109.47230 * 180.02562 * 11 10 9 39 39 H 1.09006 * 109.46847 * 179.97438 * 12 11 10 40 40 H 0.96997 * 119.99755 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.46814 * 299.99797 * 21 12 11 42 42 H 1.09005 * 109.46750 * 179.97438 * 21 12 11 43 43 H 1.09003 * 109.46909 * 179.97438 * 22 21 12 44 44 H 1.09001 * 109.47393 * 59.99645 * 22 21 12 45 45 H 1.09000 * 109.49202 * 56.86444 * 23 8 7 46 46 H 1.09005 * 109.48959 * 176.91128 * 23 8 7 47 47 H 1.09005 * 109.62368 * 173.54069 * 24 23 8 48 48 H 1.09006 * 109.62700 * 294.11752 * 24 23 8 49 49 H 1.09003 * 109.47361 * 59.99023 * 27 26 25 50 50 H 1.08997 * 109.47226 * 179.97438 * 27 26 25 51 51 H 1.09000 * 109.46748 * 299.99606 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9884 0.2727 0.0740 7 6 4.0378 2.1216 1.1864 8 7 5.4899 2.3238 1.0936 9 6 6.0078 2.9831 2.2998 10 6 5.3325 4.3459 2.4660 11 6 5.8724 5.0328 3.7219 12 6 7.3842 5.2257 3.5878 13 6 7.6765 6.0815 2.3823 14 1 8.2832 5.6922 1.5780 15 6 7.1693 7.3614 2.3061 16 7 6.4309 7.8355 3.2857 17 14 7.5310 8.4218 0.8115 18 1 7.0065 7.7550 -0.4073 19 1 6.8752 9.7444 0.9725 20 1 8.9983 8.6091 0.6807 21 6 8.0596 3.8629 3.4217 22 6 7.5197 3.1760 2.1657 23 6 5.8464 3.0801 -0.1142 24 6 5.4491 2.2726 -1.3544 25 7 4.0271 1.9139 -1.2426 26 6 3.1692 2.1637 -2.2515 27 6 3.6782 2.7371 -3.5489 28 8 1.9876 1.9268 -2.1154 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.5341 3.0881 1.1667 33 1 3.8006 1.6068 2.1174 34 1 5.7961 2.3639 3.1716 35 1 5.5442 4.9649 1.5941 36 1 4.2554 4.2084 2.5612 37 1 5.6610 4.4138 4.5939 38 1 5.3909 6.0036 3.8405 39 1 7.7688 5.7156 4.4825 40 1 6.0738 8.7358 3.2319 41 1 7.8482 3.2440 4.2937 42 1 9.1366 4.0005 3.3258 43 1 8.0011 2.2053 2.0471 44 1 7.7310 3.7950 1.2937 45 1 5.3176 4.0332 -0.1158 46 1 6.9214 3.2606 -0.1261 47 1 5.6054 2.8753 -2.2492 48 1 6.0521 1.3663 -1.4100 49 1 4.4077 2.0553 -3.9862 50 1 2.8452 2.8691 -4.2394 51 1 4.1500 3.7013 -3.3596 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173339305.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:17 Heat of formation + Delta-G solvation = -125.627488 kcal Electronic energy + Delta-G solvation = -32252.114286 eV Core-core repulsion = 28151.015889 eV Total energy + Delta-G solvation = -4101.098397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.33535 -40.70259 -40.13229 -38.17981 -37.36660 -35.76209 -34.00832 -33.17470 -31.43243 -30.87199 -30.11020 -28.95815 -27.57878 -26.45315 -25.40451 -23.61069 -23.10836 -22.46459 -21.59601 -20.45419 -19.69221 -18.95187 -18.20561 -17.88076 -17.60570 -17.10928 -16.87254 -16.60844 -16.51409 -16.27370 -15.81870 -15.50828 -15.23678 -15.01123 -14.73529 -14.56011 -14.38811 -14.27525 -14.02015 -13.60812 -13.28697 -13.22041 -13.10299 -13.08345 -12.88190 -12.85336 -12.82391 -12.57208 -12.47581 -12.46216 -12.37814 -11.91926 -11.77304 -11.58816 -11.51088 -11.41016 -10.97541 -10.79319 -10.68600 -10.50965 -10.31235 -9.96054 -9.22816 -8.01481 -6.11604 1.04628 1.39648 1.41173 1.42409 1.48405 1.64927 2.00151 2.45894 2.90472 3.27531 3.42289 3.72511 3.79056 3.85573 3.98777 4.04319 4.17651 4.25829 4.27551 4.32301 4.36445 4.38655 4.41534 4.52905 4.56950 4.62905 4.65262 4.73916 4.74509 4.77154 4.88789 4.91405 4.99988 5.02786 5.07986 5.12263 5.20226 5.31036 5.41429 5.45844 5.56680 5.62586 5.65678 5.73120 5.91121 6.04230 6.08956 6.22423 6.23714 6.47494 6.76519 7.00101 7.00140 7.54780 9.02874 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013769 B = 0.003717 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.104093 B = 7531.696983 C = 8171.229392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.363 6.363 3 C 0.478 3.522 4 O -0.531 6.531 5 C 0.163 3.837 6 H 0.135 0.865 7 C 0.057 3.943 8 N -0.510 5.510 9 C 0.100 3.900 10 C -0.117 4.117 11 C -0.100 4.100 12 C 0.039 3.961 13 C -0.500 4.500 14 H 0.062 0.938 15 C 0.010 3.990 16 N -0.923 5.923 17 Si 0.937 3.063 18 H -0.267 1.267 19 H -0.298 1.298 20 H -0.269 1.269 21 C -0.101 4.101 22 C -0.089 4.089 23 C 0.024 3.976 24 C 0.119 3.881 25 N -0.605 5.605 26 C 0.495 3.505 27 C -0.161 4.161 28 O -0.574 6.574 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.136 0.864 32 H 0.022 0.978 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.025 0.975 37 H 0.024 0.976 38 H 0.048 0.952 39 H -0.016 1.016 40 H 0.253 0.747 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.017 0.983 46 H 0.111 0.889 47 H 0.122 0.878 48 H 0.112 0.888 49 H 0.126 0.874 50 H 0.089 0.911 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 -17.992 -11.368 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.279 6.279 3 C 0.321 3.679 4 O -0.419 6.419 5 C 0.057 3.943 6 H 0.153 0.847 7 C -0.073 4.073 8 N -0.233 5.233 9 C -0.007 4.007 10 C -0.156 4.156 11 C -0.139 4.139 12 C 0.020 3.980 13 C -0.538 4.538 14 H 0.080 0.920 15 C -0.187 4.187 16 N -0.564 5.564 17 Si 0.763 3.237 18 H -0.192 1.192 19 H -0.224 1.224 20 H -0.194 1.194 21 C -0.139 4.139 22 C -0.126 4.126 23 C -0.105 4.105 24 C -0.001 4.001 25 N -0.342 5.342 26 C 0.286 3.714 27 C -0.219 4.219 28 O -0.454 6.454 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.154 0.846 32 H 0.041 0.959 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.066 0.934 39 H 0.003 0.997 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.035 0.965 46 H 0.129 0.871 47 H 0.140 0.860 48 H 0.131 0.869 49 H 0.144 0.856 50 H 0.108 0.892 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.902 -18.139 -11.314 21.574 hybrid contribution -1.013 2.475 -0.014 2.674 sum -3.915 -15.665 -11.328 19.724 Atomic orbital electron populations 1.23379 0.75084 1.05257 1.01665 1.86391 1.24758 1.32531 1.84271 1.23147 0.91704 0.81659 0.71386 1.90635 1.67565 1.37610 1.46122 1.20792 0.86575 1.00517 0.86371 0.84698 1.22223 0.89895 0.98054 0.97100 1.62313 1.09706 1.48349 1.02898 1.21649 0.95623 0.91825 0.91636 1.21829 0.96646 0.97737 0.99397 1.21311 0.99345 0.98659 0.94567 1.18687 0.91900 0.92586 0.94804 1.21421 1.29954 0.97844 1.04564 0.92000 1.25659 0.95549 0.99354 0.98151 1.70031 1.36124 1.16634 1.33591 0.85931 0.78524 0.78057 0.81143 1.19228 1.22427 1.19423 1.21447 0.99055 0.96070 0.97335 1.21425 0.92790 1.00012 0.98402 1.22744 1.03083 0.94553 0.90071 1.22266 0.77743 1.01637 0.98479 1.48410 1.11360 1.60849 1.13533 1.21918 0.85383 0.76983 0.87081 1.21948 1.04713 1.03604 0.91653 1.90717 1.18435 1.54577 1.81717 0.92352 0.93529 0.84630 0.95926 0.88236 0.89929 0.93426 0.95642 0.95712 0.93365 0.99740 0.93769 0.93180 0.92942 0.90219 0.91854 0.96493 0.87075 0.85985 0.86949 0.85574 0.89192 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.88 10.56 113.37 1.20 2.07 16 2 O -0.36 -10.01 10.56 -49.47 -0.52 -10.54 16 3 C 0.48 15.14 4.52 71.23 0.32 15.46 16 4 O -0.53 -21.16 14.36 29.76 0.43 -20.74 16 5 C 0.16 4.14 3.51 44.21 0.16 4.30 16 6 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 7 C 0.06 1.58 4.23 86.38 0.37 1.94 16 8 N -0.51 -13.30 4.65 -870.02 -4.05 -17.34 16 9 C 0.10 3.13 2.29 44.92 0.10 3.23 16 10 C -0.12 -4.72 4.30 30.59 0.13 -4.59 16 11 C -0.10 -4.65 5.23 30.59 0.16 -4.49 16 12 C 0.04 1.83 2.59 -11.54 -0.03 1.80 16 13 C -0.50 -25.29 6.61 25.60 0.17 -25.12 16 14 H 0.06 2.98 6.71 -2.91 -0.02 2.96 16 15 C 0.01 0.55 5.30 84.65 0.45 1.00 16 16 N -0.92 -53.38 11.32 21.45 0.24 -53.14 16 17 Si 0.94 42.31 29.54 68.60 2.03 44.34 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 19 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 C -0.10 -3.68 5.41 30.59 0.17 -3.52 16 22 C -0.09 -2.73 4.62 30.60 0.14 -2.58 16 23 C 0.02 0.58 4.81 86.38 0.42 1.00 16 24 C 0.12 1.97 6.49 86.35 0.56 2.53 16 25 N -0.61 -14.01 3.01 -798.26 -2.40 -16.41 16 26 C 0.49 12.76 7.66 87.66 0.67 13.43 16 27 C -0.16 -2.39 8.73 71.24 0.62 -1.77 16 28 O -0.57 -20.26 12.76 22.57 0.29 -19.97 16 29 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 30 H 0.05 1.20 8.13 -2.38 -0.02 1.18 16 31 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.02 0.81 6.45 -2.39 -0.02 0.79 16 33 H 0.10 2.53 8.11 -2.39 -0.02 2.52 16 34 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.05 2.16 5.74 -2.39 -0.01 2.15 16 36 H 0.02 1.03 6.57 -2.39 -0.02 1.01 16 37 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 2.64 6.07 -2.39 -0.01 2.62 16 39 H -0.02 -0.85 8.14 -2.38 -0.02 -0.87 16 40 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 41 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.06 2.09 4.66 -2.39 -0.01 2.07 16 45 H 0.02 0.53 6.79 -2.39 -0.02 0.51 16 46 H 0.11 2.56 5.83 -2.38 -0.01 2.55 16 47 H 0.12 1.35 6.04 -2.38 -0.01 1.34 16 48 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 49 H 0.13 0.99 8.12 -2.39 -0.02 0.97 16 50 H 0.09 1.41 8.12 -2.39 -0.02 1.39 16 51 H 0.10 1.33 7.50 -2.39 -0.02 1.31 16 Total: -1.00 -74.43 378.96 2.54 -71.90 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.93 Total: 17.21 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 5.60 Total: 4.70 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -6.21 Total: -86.90 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: 0.19 Total: -51.24 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -74.43 2.54 -71.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339305.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.732 kcal (2) G-P(sol) polarization free energy of solvation -74.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds