Wall clock time and date at job start Tue Mar 31 2020 22:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00322 * 2 1 4 4 H 1.48502 * 109.47248 * 240.00269 * 3 2 1 5 5 H 1.48505 * 109.46936 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47370 * 119.99685 * 3 2 1 7 7 C 1.38955 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00005 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00071 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00050 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99867 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47199 * 180.02562 * 12 10 9 14 14 C 1.46905 * 111.00171 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.46987 * 180.02562 * 14 13 12 16 16 C 1.53002 * 109.46969 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.47035 * 179.97438 * 16 15 14 18 18 C 1.34777 * 119.99873 * 179.97438 * 17 16 15 19 19 O 1.21284 * 119.99754 * 0.02562 * 18 17 16 20 20 C 1.50696 * 120.00137 * 180.02562 * 18 17 16 21 21 C 1.54989 * 113.20143 * 64.17268 * 20 18 17 22 22 C 1.54054 * 104.76835 * 146.46678 * 21 20 18 23 23 N 1.48238 * 106.69504 * 1.02195 * 22 21 20 24 24 C 1.48806 * 105.17712 * 332.50908 * 23 22 21 25 25 C 1.47670 * 108.91537 * 88.16108 * 23 22 21 26 26 C 1.52992 * 109.28802 * 312.91240 * 25 23 22 27 27 C 1.54015 * 113.03120 * 301.17787 * 20 18 17 28 28 H 0.96994 * 120.00070 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99377 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47213 * 60.00024 * 12 10 9 31 31 H 1.09001 * 109.47086 * 299.99779 * 12 10 9 32 32 H 1.00902 * 111.00271 * 303.94964 * 13 12 10 33 33 H 1.08992 * 109.46864 * 59.99773 * 14 13 12 34 34 H 1.08996 * 109.46646 * 299.99677 * 14 13 12 35 35 H 1.09004 * 109.47298 * 59.99949 * 15 14 13 36 36 H 1.09004 * 109.47552 * 299.99821 * 15 14 13 37 37 H 1.09004 * 109.46930 * 59.99996 * 16 15 14 38 38 H 1.09000 * 109.47312 * 299.99939 * 16 15 14 39 39 H 0.96999 * 120.00080 * 0.02562 * 17 16 15 40 40 H 1.08999 * 110.38058 * 265.29331 * 21 20 18 41 41 H 1.09003 * 110.37967 * 27.64227 * 21 20 18 42 42 H 1.08998 * 110.01672 * 241.70621 * 22 21 20 43 43 H 1.09004 * 110.04694 * 120.34482 * 22 21 20 44 44 H 1.08999 * 110.93158 * 284.57093 * 24 23 22 45 45 H 1.08998 * 110.96327 * 160.91197 * 24 23 22 46 46 H 1.09005 * 109.50438 * 72.85721 * 25 23 22 47 47 H 1.09005 * 109.50558 * 192.96899 * 25 23 22 48 48 H 1.08997 * 109.37170 * 64.97966 * 26 25 23 49 49 H 1.09007 * 109.36895 * 184.72208 * 26 25 23 50 50 H 1.08996 * 109.63130 * 291.83238 * 27 20 18 51 51 H 1.09002 * 109.63293 * 52.42386 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0011 12 6 1.2437 -4.8630 0.0022 13 7 2.1983 -5.9795 0.0027 14 6 1.4980 -7.2709 0.0026 15 6 2.5229 -8.4068 0.0038 16 6 1.7935 -9.7518 0.0044 17 7 2.7749 -10.8396 0.0049 18 6 2.3597 -12.1218 0.0060 19 8 1.1736 -12.3751 0.0061 20 6 3.3691 -13.2407 0.0071 21 6 4.2388 -13.2772 1.2895 22 6 4.5154 -14.7728 1.5339 23 7 3.8562 -15.5135 0.4320 24 6 2.7198 -14.6513 0.0082 25 6 4.7966 -15.6222 -0.7014 26 6 5.4276 -14.2541 -0.9676 27 6 4.3177 -13.1976 -1.2055 28 1 -0.4850 0.8400 -0.0004 29 1 0.3533 -2.3906 0.0016 30 1 0.6167 -4.9209 -0.8876 31 1 0.6175 -4.9205 0.8925 32 1 2.8331 -5.9129 -0.7787 33 1 0.8734 -7.3454 -0.8875 34 1 0.8729 -7.3451 0.8924 35 1 3.1472 -8.3321 0.8943 36 1 3.1485 -8.3328 -0.8858 37 1 1.1689 -9.8268 -0.8858 38 1 1.1682 -9.8257 0.8942 39 1 3.7235 -10.6369 0.0052 40 1 5.1734 -12.7394 1.1298 41 1 3.6930 -12.8497 2.1306 42 1 4.0955 -15.0782 2.4923 43 1 5.5890 -14.9614 1.5202 44 1 1.9024 -14.7031 0.7274 45 1 2.3757 -14.9224 -0.9899 46 1 5.5780 -16.3423 -0.4582 47 1 4.2590 -15.9540 -1.5898 48 1 6.0362 -13.9640 -0.1112 49 1 6.0575 -14.3131 -1.8553 50 1 3.7600 -13.4214 -2.1148 51 1 4.7683 -12.2082 -1.2830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174768583.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:50 Heat of formation + Delta-G solvation = -70.308269 kcal Electronic energy + Delta-G solvation = -28556.101768 eV Core-core repulsion = 24489.694943 eV Total energy + Delta-G solvation = -4066.406824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.73692 -39.33222 -38.33298 -36.58423 -34.94311 -33.87406 -32.99993 -32.53100 -31.35744 -31.00220 -29.74712 -27.25126 -25.39974 -24.88791 -23.81258 -22.94475 -22.03514 -21.75749 -20.72118 -19.65416 -19.20404 -17.90841 -17.60473 -16.77111 -16.57691 -16.22777 -15.90975 -15.58998 -15.33113 -14.71720 -14.62662 -14.46214 -14.35117 -14.24016 -13.57255 -13.55981 -13.47572 -13.36099 -13.20702 -13.14886 -12.82689 -12.18931 -12.14148 -12.05503 -11.87558 -11.83373 -11.56000 -11.47564 -11.45234 -11.29201 -11.28036 -11.09923 -11.03912 -10.96233 -10.45310 -10.22729 -10.04235 -9.51482 -9.39866 -9.03756 -8.49486 -8.10110 -7.97584 -6.42862 -3.83928 2.25198 2.76532 3.19134 3.24976 3.29259 3.44023 3.89166 3.92892 4.05003 4.08349 4.17486 4.27984 4.42977 4.48338 4.49411 4.57659 4.77098 4.84180 4.89620 4.94007 4.98929 5.01221 5.09820 5.15514 5.19410 5.24467 5.30647 5.33894 5.39049 5.42228 5.46134 5.47323 5.54802 5.58982 5.62816 5.67688 5.76894 5.92676 5.95833 5.99276 6.11599 6.24615 6.25019 6.42527 7.13402 7.16281 7.53690 7.61218 7.87054 8.04628 8.59789 9.16303 9.52778 10.04144 10.74756 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.035204 B = 0.001397 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.174779 B =20031.023728 C =20420.185807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.585 6.585 12 C 0.050 3.950 13 N -0.669 5.669 14 C 0.062 3.938 15 C -0.129 4.129 16 C 0.120 3.880 17 N -0.725 5.725 18 C 0.537 3.463 19 O -0.535 6.535 20 C -0.121 4.121 21 C -0.135 4.135 22 C 0.030 3.970 23 N -0.495 5.495 24 C 0.057 3.943 25 C 0.030 3.970 26 C -0.155 4.155 27 C -0.105 4.105 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.349 0.651 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.401 0.599 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.079 -30.600 -1.166 31.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.068 4.068 15 C -0.167 4.167 16 C -0.004 4.004 17 N -0.377 5.377 18 C 0.322 3.678 19 O -0.412 6.412 20 C -0.126 4.126 21 C -0.174 4.174 22 C -0.098 4.098 23 N -0.215 5.215 24 C -0.072 4.072 25 C -0.099 4.099 26 C -0.194 4.194 27 C -0.143 4.143 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.168 0.832 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.235 0.765 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.090 0.910 50 H 0.092 0.908 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.796 -31.196 -0.304 31.929 hybrid contribution 0.180 1.963 -1.206 2.311 sum 6.976 -29.233 -1.510 30.092 Atomic orbital electron populations 1.69602 1.05942 1.28298 1.50417 1.25267 0.95637 0.99732 0.97250 0.85908 0.78755 0.80420 0.79064 1.19931 1.20959 1.19873 1.19664 0.93360 0.82260 1.47819 0.87965 1.41859 1.09217 1.04597 1.64270 1.19799 0.88378 0.84730 0.84544 1.90514 1.13777 1.87078 1.55524 1.21672 0.94336 0.90913 1.01296 1.60063 1.18926 0.99907 1.51281 1.21825 0.95320 0.88794 1.00841 1.21741 0.98974 0.92353 1.03620 1.21356 0.91351 0.85088 1.02629 1.46012 1.10604 1.05668 1.75395 1.19945 0.89041 0.83162 0.75671 1.90721 1.17410 1.83919 1.49119 1.22664 0.95932 0.96231 0.97769 1.22927 0.99626 0.98693 0.96184 1.23087 0.99747 0.90633 0.96374 1.66434 1.06933 1.41805 1.06342 1.23400 0.94458 0.86883 1.02458 1.22643 0.96316 0.96165 0.94731 1.22595 0.98111 0.95870 1.02804 1.22167 0.95886 0.99885 0.96375 0.91795 0.77429 0.93808 0.89538 0.83220 0.95229 0.90756 0.90138 0.91295 0.91388 0.91141 0.76497 0.90250 0.90691 0.89814 0.90538 0.88866 0.89762 0.90170 0.90458 0.90783 0.90960 0.90822 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.49 13.05 55.50 0.72 -23.76 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 9 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 10 C 0.44 10.38 7.82 -10.99 -0.09 10.30 16 11 O -0.58 -15.84 15.78 5.55 0.09 -15.75 16 12 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 13 N -0.67 -10.47 6.13 -115.06 -0.70 -11.17 16 14 C 0.06 0.71 5.68 -3.82 -0.02 0.69 16 15 C -0.13 -1.17 5.59 -26.73 -0.15 -1.32 16 16 C 0.12 1.07 5.67 -4.04 -0.02 1.04 16 17 N -0.73 -5.73 5.50 -60.29 -0.33 -6.06 16 18 C 0.54 5.16 6.78 -10.99 -0.07 5.09 16 19 O -0.54 -7.28 16.15 5.55 0.09 -7.19 16 20 C -0.12 -0.84 0.95 -152.87 -0.14 -0.98 16 21 C -0.14 -0.76 5.50 -25.13 -0.14 -0.90 16 22 C 0.03 0.17 6.20 -2.54 -0.02 0.15 16 23 N -0.50 -3.40 6.07 -228.99 -1.39 -4.79 16 24 C 0.06 0.45 5.46 -1.55 -0.01 0.44 16 25 C 0.03 0.16 5.84 -3.40 -0.02 0.14 16 26 C -0.16 -0.68 5.56 -25.64 -0.14 -0.82 16 27 C -0.11 -0.57 5.13 -25.11 -0.13 -0.70 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.35 5.57 8.43 -39.29 -0.33 5.24 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.40 2.31 8.03 -40.82 -0.33 1.98 16 40 H 0.08 0.35 6.95 -51.93 -0.36 -0.01 16 41 H 0.07 0.48 8.00 -51.93 -0.42 0.06 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.34 6.94 -51.93 -0.36 -0.02 16 44 H 0.09 0.88 7.90 -51.93 -0.41 0.46 16 45 H 0.08 0.66 7.68 -51.93 -0.40 0.26 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.08 0.40 7.87 -51.93 -0.41 -0.01 16 48 H 0.07 0.30 5.37 -51.93 -0.28 0.02 16 49 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 50 H 0.07 0.44 8.06 -51.93 -0.42 0.02 16 51 H 0.07 0.33 7.69 -51.93 -0.40 -0.07 16 LS Contribution 402.22 15.07 6.06 6.06 Total: -1.00 -33.22 402.22 -10.36 -43.58 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -8.59 Total: 11.52 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -1.22 Total: 5.94 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -1.76 Total: -60.13 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.18 Total: -22.94 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.22 -10.36 -43.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174768583.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.730 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds