Wall clock time and date at job start Tue Mar 31 2020 22:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00322 * 2 1 4 4 H 1.48502 * 109.47248 * 240.00269 * 3 2 1 5 5 H 1.48505 * 109.46936 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47370 * 119.99685 * 3 2 1 7 7 C 1.38955 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00005 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00071 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00050 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99867 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47199 * 180.02562 * 12 10 9 14 14 C 1.46905 * 111.00171 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.46987 * 180.02562 * 14 13 12 16 16 C 1.53002 * 109.46969 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.47035 * 179.97438 * 16 15 14 18 18 C 1.34777 * 119.99873 * 179.97438 * 17 16 15 19 19 O 1.21284 * 119.99754 * 0.02562 * 18 17 16 20 20 C 1.50696 * 120.00137 * 180.02562 * 18 17 16 21 21 C 1.54989 * 113.20143 * 64.17268 * 20 18 17 22 22 C 1.54054 * 104.76835 * 146.46678 * 21 20 18 23 23 N 1.48238 * 106.69504 * 1.02195 * 22 21 20 24 24 C 1.48806 * 105.17712 * 332.50908 * 23 22 21 25 25 C 1.47670 * 108.91537 * 88.16108 * 23 22 21 26 26 C 1.52992 * 109.28802 * 312.91240 * 25 23 22 27 27 C 1.54015 * 113.03120 * 301.17787 * 20 18 17 28 28 H 0.96994 * 120.00070 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99377 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47213 * 60.00024 * 12 10 9 31 31 H 1.09001 * 109.47086 * 299.99779 * 12 10 9 32 32 H 1.00902 * 111.00271 * 303.94964 * 13 12 10 33 33 H 1.08992 * 109.46864 * 59.99773 * 14 13 12 34 34 H 1.08996 * 109.46646 * 299.99677 * 14 13 12 35 35 H 1.09004 * 109.47298 * 59.99949 * 15 14 13 36 36 H 1.09004 * 109.47552 * 299.99821 * 15 14 13 37 37 H 1.09004 * 109.46930 * 59.99996 * 16 15 14 38 38 H 1.09000 * 109.47312 * 299.99939 * 16 15 14 39 39 H 0.96999 * 120.00080 * 0.02562 * 17 16 15 40 40 H 1.08999 * 110.38058 * 265.29331 * 21 20 18 41 41 H 1.09003 * 110.37967 * 27.64227 * 21 20 18 42 42 H 1.08998 * 110.01672 * 241.70621 * 22 21 20 43 43 H 1.09004 * 110.04694 * 120.34482 * 22 21 20 44 44 H 1.08999 * 110.93158 * 284.57093 * 24 23 22 45 45 H 1.08998 * 110.96327 * 160.91197 * 24 23 22 46 46 H 1.09005 * 109.50438 * 72.85721 * 25 23 22 47 47 H 1.09005 * 109.50558 * 192.96899 * 25 23 22 48 48 H 1.08997 * 109.37170 * 64.97966 * 26 25 23 49 49 H 1.09007 * 109.36895 * 184.72208 * 26 25 23 50 50 H 1.08996 * 109.63130 * 291.83238 * 27 20 18 51 51 H 1.09002 * 109.63293 * 52.42386 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0011 12 6 1.2437 -4.8630 0.0022 13 7 2.1983 -5.9795 0.0027 14 6 1.4980 -7.2709 0.0026 15 6 2.5229 -8.4068 0.0038 16 6 1.7935 -9.7518 0.0044 17 7 2.7749 -10.8396 0.0049 18 6 2.3597 -12.1218 0.0060 19 8 1.1736 -12.3751 0.0061 20 6 3.3691 -13.2407 0.0071 21 6 4.2388 -13.2772 1.2895 22 6 4.5154 -14.7728 1.5339 23 7 3.8562 -15.5135 0.4320 24 6 2.7198 -14.6513 0.0082 25 6 4.7966 -15.6222 -0.7014 26 6 5.4276 -14.2541 -0.9676 27 6 4.3177 -13.1976 -1.2055 28 1 -0.4850 0.8400 -0.0004 29 1 0.3533 -2.3906 0.0016 30 1 0.6167 -4.9209 -0.8876 31 1 0.6175 -4.9205 0.8925 32 1 2.8331 -5.9129 -0.7787 33 1 0.8734 -7.3454 -0.8875 34 1 0.8729 -7.3451 0.8924 35 1 3.1472 -8.3321 0.8943 36 1 3.1485 -8.3328 -0.8858 37 1 1.1689 -9.8268 -0.8858 38 1 1.1682 -9.8257 0.8942 39 1 3.7235 -10.6369 0.0052 40 1 5.1734 -12.7394 1.1298 41 1 3.6930 -12.8497 2.1306 42 1 4.0955 -15.0782 2.4923 43 1 5.5890 -14.9614 1.5202 44 1 1.9024 -14.7031 0.7274 45 1 2.3757 -14.9224 -0.9899 46 1 5.5780 -16.3423 -0.4582 47 1 4.2590 -15.9540 -1.5898 48 1 6.0362 -13.9640 -0.1112 49 1 6.0575 -14.3131 -1.8553 50 1 3.7600 -13.4214 -2.1148 51 1 4.7683 -12.2082 -1.2830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174768583.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:49 Heat of formation + Delta-G solvation = -97.911637 kcal Electronic energy + Delta-G solvation = -28557.298740 eV Core-core repulsion = 24489.694943 eV Total energy + Delta-G solvation = -4067.603796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.28670 -40.19582 -40.02025 -37.65199 -36.14164 -35.67150 -33.64003 -33.26875 -32.94658 -32.01563 -30.25807 -28.62125 -26.65275 -25.66832 -24.90271 -23.73554 -22.65025 -22.59327 -21.25168 -21.06434 -20.21858 -19.89315 -18.22269 -17.88349 -17.30590 -17.19182 -17.08214 -16.60192 -16.33376 -16.18189 -15.92640 -15.48620 -15.33272 -15.06846 -14.93216 -14.74860 -14.36085 -13.99181 -13.89839 -13.69160 -13.60099 -13.53451 -13.35044 -13.19311 -12.86965 -12.76248 -12.69245 -12.54047 -12.43436 -12.40525 -12.12209 -12.04499 -11.87314 -11.79119 -11.67471 -11.50893 -11.50346 -10.79033 -10.36111 -10.15968 -10.02426 -9.51604 -9.35108 -8.46886 -5.96067 1.40094 1.42130 1.50921 1.53144 2.04387 2.06067 2.29596 2.91248 2.96310 3.20331 3.43404 3.51351 3.55206 3.66039 3.93387 3.98193 4.05379 4.09200 4.12043 4.14033 4.20489 4.32819 4.39020 4.44494 4.47501 4.54179 4.55044 4.57701 4.62534 4.68463 4.75976 4.79976 4.89585 4.93408 4.95412 5.01937 5.10193 5.13615 5.15722 5.18706 5.27254 5.39079 5.40283 5.76043 5.87261 5.98507 6.08528 6.39576 6.47533 6.59300 7.11727 7.16128 7.55412 8.10354 8.70191 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.035204 B = 0.001397 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.174779 B =20031.023728 C =20420.185807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.064 3.936 13 N -0.683 5.683 14 C 0.062 3.938 15 C -0.114 4.114 16 C 0.126 3.874 17 N -0.714 5.714 18 C 0.534 3.466 19 O -0.582 6.582 20 C -0.116 4.116 21 C -0.129 4.129 22 C 0.029 3.971 23 N -0.508 5.508 24 C 0.056 3.944 25 C 0.028 3.972 26 C -0.148 4.148 27 C -0.103 4.103 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.345 0.655 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.414 0.586 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.066 0.934 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.316 -30.874 -1.408 32.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.467 4.467 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.315 5.315 14 C -0.067 4.067 15 C -0.152 4.152 16 C 0.002 3.998 17 N -0.365 5.365 18 C 0.320 3.680 19 O -0.461 6.461 20 C -0.121 4.121 21 C -0.168 4.168 22 C -0.099 4.099 23 N -0.228 5.228 24 C -0.073 4.073 25 C -0.100 4.100 26 C -0.187 4.187 27 C -0.141 4.141 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.164 0.836 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.251 0.749 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.109 0.891 47 H 0.092 0.908 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.084 0.916 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.042 -31.482 -0.545 32.497 hybrid contribution -0.224 1.968 -1.125 2.278 sum 7.818 -29.513 -1.670 30.577 Atomic orbital electron populations 1.69665 1.06865 1.29399 1.50146 1.26054 0.96543 1.02454 0.96167 0.84974 0.77745 0.76554 0.78968 1.19626 1.19519 1.19716 1.19661 0.92776 0.84059 1.50178 0.90214 1.41938 1.09350 1.04743 1.64969 1.20876 0.88274 0.86174 0.82253 1.90480 1.15810 1.87971 1.56726 1.21535 0.94062 0.88141 1.03109 1.60063 1.19142 1.00890 1.51428 1.21905 0.95852 0.87369 1.01561 1.21578 0.98304 0.91311 1.04033 1.21209 0.91393 0.85268 1.01963 1.45910 1.11217 1.05013 1.74368 1.20423 0.88879 0.84012 0.74644 1.90700 1.19460 1.84608 1.51364 1.22599 0.95641 0.94423 0.99468 1.22920 1.00007 0.98957 0.94943 1.23132 1.00627 0.90373 0.95746 1.66408 1.07234 1.41833 1.07354 1.23280 0.94534 0.88077 1.01409 1.22707 0.96180 0.97129 0.94025 1.22556 0.97661 0.94691 1.03764 1.22189 0.95741 1.01080 0.95064 0.91279 0.76972 0.91546 0.87885 0.83588 0.94087 0.90383 0.90239 0.90346 0.91965 0.92028 0.74943 0.88175 0.91668 0.90373 0.88745 0.91220 0.90333 0.89117 0.90781 0.89847 0.89720 0.91565 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.34 -19.13 9.68 84.04 0.81 -18.31 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.57 -29.34 5.29 -306.99 -1.62 -30.96 16 10 C 0.44 20.62 7.82 87.66 0.69 21.31 16 11 O -0.62 -34.20 15.78 -3.04 -0.05 -34.25 16 12 C 0.06 2.15 6.17 85.56 0.53 2.67 16 13 N -0.68 -20.32 6.13 -517.95 -3.17 -23.49 16 14 C 0.06 1.30 5.68 86.30 0.49 1.80 16 15 C -0.11 -1.85 5.59 30.59 0.17 -1.68 16 16 C 0.13 2.10 5.67 86.38 0.49 2.59 16 17 N -0.71 -10.39 5.50 -463.04 -2.55 -12.93 16 18 C 0.53 10.12 6.78 87.66 0.59 10.72 16 19 O -0.58 -16.30 16.15 -3.04 -0.05 -16.35 16 20 C -0.12 -1.52 0.95 -51.12 -0.05 -1.57 16 21 C -0.13 -1.26 5.50 31.63 0.17 -1.08 16 22 C 0.03 0.29 6.20 86.40 0.54 0.83 16 23 N -0.51 -6.62 6.07 -878.40 -5.33 -11.95 16 24 C 0.06 0.91 5.46 86.72 0.47 1.38 16 25 C 0.03 0.24 5.84 86.15 0.50 0.75 16 26 C -0.15 -0.91 5.56 31.30 0.17 -0.74 16 27 C -0.10 -0.92 5.13 31.65 0.16 -0.76 16 28 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 29 H 0.40 19.27 7.90 -92.70 -0.73 18.54 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 32 H 0.35 10.62 8.43 -89.69 -0.76 9.87 16 33 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.41 3.86 8.03 -92.71 -0.74 3.11 16 40 H 0.10 0.57 6.95 -2.39 -0.02 0.55 16 41 H 0.06 0.78 8.00 -2.39 -0.02 0.76 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.09 0.60 6.94 -2.38 -0.02 0.58 16 44 H 0.07 1.43 7.90 -2.39 -0.02 1.41 16 45 H 0.08 1.30 7.68 -2.39 -0.02 1.28 16 46 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 47 H 0.07 0.69 7.87 -2.38 -0.02 0.67 16 48 H 0.08 0.39 5.37 -2.39 -0.01 0.38 16 49 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 50 H 0.07 0.71 8.06 -2.39 -0.02 0.69 16 51 H 0.08 0.54 7.69 -2.39 -0.02 0.52 16 Total: -1.00 -72.77 402.22 -5.52 -78.29 By element: Atomic # 1 Polarization: 39.78 SS G_CDS: -1.28 Total: 38.51 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 6.21 Total: 17.71 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -12.39 Total: -128.58 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -0.10 Total: -50.61 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -72.77 -5.52 -78.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174768583.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.626 kcal (2) G-P(sol) polarization free energy of solvation -72.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds