Wall clock time and date at job start Tue Mar 31 2020 21:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42908 * 114.00009 * 2 1 4 4 C 1.52998 * 112.84676 * 295.01877 * 3 2 1 5 5 C 1.50698 * 109.47082 * 292.41379 * 4 3 2 6 6 O 1.21279 * 120.00102 * 6.49483 * 5 4 3 7 7 N 1.34781 * 120.00037 * 186.50143 * 5 4 3 8 8 C 1.46843 * 120.40244 * 359.97438 * 7 5 4 9 9 C 1.53369 * 109.25245 * 232.25702 * 8 7 5 10 10 C 1.52793 * 108.81222 * 306.17599 * 9 8 7 11 11 H 1.08991 * 109.34681 * 303.33658 * 10 9 8 12 12 O 1.42601 * 111.11345 * 182.54598 * 10 9 8 13 13 C 1.43150 * 113.63839 * 176.40702 * 12 10 9 14 14 C 1.53205 * 109.73518 * 61.69143 * 13 12 10 15 15 N 1.47354 * 108.79350 * 308.77887 * 14 13 12 16 16 C 1.36934 * 121.29731 * 230.22801 * 15 14 13 17 17 H 1.08007 * 119.99841 * 151.26976 * 16 15 14 18 18 C 1.38813 * 120.00238 * 331.53881 * 16 15 14 19 19 N 1.31620 * 120.00035 * 345.89201 * 18 16 15 20 20 Si 1.86799 * 120.00018 * 165.89188 * 18 16 15 21 21 H 1.48500 * 109.47420 * 89.99903 * 20 18 16 22 22 H 1.48503 * 109.47204 * 210.00340 * 20 18 16 23 23 H 1.48506 * 109.47043 * 329.99983 * 20 18 16 24 24 C 1.46867 * 117.39444 * 50.50102 * 15 14 13 25 25 H 1.09000 * 109.65546 * 67.41253 * 24 15 14 26 26 C 1.47122 * 120.40728 * 180.02562 * 7 5 4 27 27 C 1.53774 * 113.68732 * 66.28733 * 3 2 1 28 28 C 1.53783 * 87.08365 * 89.13005 * 27 3 2 29 29 C 1.53775 * 87.08174 * 25.42866 * 28 27 3 30 30 H 1.09008 * 109.46728 * 305.26685 * 1 2 3 31 31 H 1.08997 * 109.47292 * 65.26846 * 1 2 3 32 32 H 1.08999 * 109.46800 * 185.27296 * 1 2 3 33 33 H 1.09005 * 109.46649 * 172.41773 * 4 3 2 34 34 H 1.08994 * 109.47342 * 52.41841 * 4 3 2 35 35 H 1.09003 * 109.50286 * 112.32796 * 8 7 5 36 36 H 1.08997 * 109.54595 * 352.21870 * 8 7 5 37 37 H 1.09004 * 109.58181 * 186.37869 * 9 8 7 38 38 H 1.09003 * 109.68839 * 66.04330 * 9 8 7 39 39 H 1.09001 * 109.42491 * 301.61406 * 13 12 10 40 40 H 1.08992 * 109.38501 * 181.74474 * 13 12 10 41 41 H 1.09001 * 109.58038 * 188.98647 * 14 13 12 42 42 H 1.09000 * 109.69604 * 68.64085 * 14 13 12 43 43 H 0.96999 * 119.99654 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.73155 * 246.41380 * 26 7 5 45 45 H 1.08994 * 109.73254 * 7.04911 * 26 7 5 46 46 H 1.09003 * 113.61542 * 203.67467 * 27 3 2 47 47 H 1.09002 * 113.61968 * 334.57307 * 27 3 2 48 48 H 1.09000 * 113.60784 * 270.88103 * 28 27 3 49 49 H 1.08998 * 113.61466 * 139.98140 * 28 27 3 50 50 H 1.08993 * 113.61798 * 220.02679 * 29 28 27 51 51 H 1.09007 * 113.69132 * 89.12826 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7071 2.0907 -1.2777 5 6 2.4106 1.4445 -2.4432 6 8 2.9900 0.3898 -2.2928 7 7 2.3959 2.0388 -3.6529 8 6 1.6967 3.3157 -3.8451 9 6 0.7330 3.1909 -5.0316 10 6 1.5117 2.6940 -6.2487 11 1 2.3385 3.3748 -6.4509 12 8 0.6721 2.6158 -7.3987 13 6 1.3660 2.2334 -8.5910 14 6 1.9660 0.8348 -8.4143 15 7 2.7387 0.8048 -7.1599 16 6 4.0238 0.3329 -7.1272 17 1 4.7201 0.7128 -6.3941 18 6 4.4332 -0.6297 -8.0398 19 7 3.5396 -1.2890 -8.7464 20 14 6.2524 -0.9894 -8.2650 21 1 6.6650 -2.0622 -7.3247 22 1 6.5004 -1.4319 -9.6607 23 1 7.0380 0.2402 -7.9886 24 6 2.0746 1.2950 -5.9452 25 1 1.2622 0.6207 -5.6740 26 6 3.0793 1.4156 -4.7970 27 6 1.7442 2.1002 1.2893 28 6 3.0300 1.4699 1.8498 29 6 3.4971 1.3178 0.3926 30 1 -0.3633 0.5934 0.8391 31 1 -0.3634 0.4299 -0.9334 32 1 -0.3633 -1.0233 0.0944 33 1 2.0576 3.1168 -1.1652 34 1 0.6321 2.0916 -1.4572 35 1 2.4240 4.1019 -4.0480 36 1 1.1351 3.5631 -2.9443 37 1 0.2952 4.1648 -5.2507 38 1 -0.0580 2.4811 -4.7892 39 1 2.1646 2.9479 -8.7907 40 1 0.6688 2.2255 -9.4286 41 1 2.6238 0.6107 -9.2541 42 1 1.1666 0.0952 -8.3688 43 1 3.8258 -1.9613 -9.3843 44 1 3.9214 2.0353 -5.1048 45 1 3.4350 0.4240 -4.5176 46 1 1.8089 3.1803 1.1577 47 1 0.8409 1.7903 1.8148 48 1 2.8650 0.5193 2.3570 49 1 3.6373 2.1622 2.4330 50 1 4.0088 0.3762 0.1942 51 1 4.0413 2.1833 0.0145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177005640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:36 Heat of formation + Delta-G solvation = -86.132798 kcal Electronic energy + Delta-G solvation = -31850.371029 eV Core-core repulsion = 27750.985251 eV Total energy + Delta-G solvation = -4099.385779 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.73910 -40.80102 -39.59049 -37.32620 -36.55660 -36.47822 -33.63167 -33.00779 -31.84423 -30.88126 -28.85234 -27.95691 -26.77084 -26.29869 -25.46356 -24.34728 -23.41886 -22.70108 -21.44052 -20.46050 -19.91258 -18.71811 -18.31148 -17.44221 -17.16985 -17.03720 -16.89452 -16.43464 -16.31926 -16.11750 -15.94311 -15.56871 -15.44876 -15.01772 -14.96190 -14.74883 -14.57426 -14.49358 -13.94315 -13.86220 -13.34701 -13.23122 -13.10002 -12.97640 -12.84068 -12.71578 -12.51929 -12.41558 -12.34416 -12.22642 -12.07963 -11.93877 -11.89803 -11.74586 -11.65728 -11.26493 -11.07746 -10.77424 -10.68508 -10.54065 -10.27428 -9.63897 -8.75228 -7.94615 -5.44927 1.41321 1.43086 1.51887 1.70699 1.94641 2.44130 2.80488 2.84590 3.21072 3.39074 3.44084 3.69552 3.71130 3.76626 3.92688 3.96914 4.03958 4.10279 4.17295 4.26480 4.36827 4.40540 4.41108 4.46938 4.49223 4.53261 4.54941 4.59566 4.63839 4.70189 4.81161 4.83721 4.85074 4.87560 4.92002 5.00058 5.08934 5.10460 5.11329 5.20560 5.29642 5.30432 5.44102 5.46463 5.52180 5.59877 6.23848 6.32276 6.43787 6.49213 7.01974 7.28425 7.69236 8.25026 9.11475 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013118 B = 0.003573 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.018219 B = 7833.876509 C = 9119.283137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.385 6.385 3 C 0.094 3.906 4 C -0.148 4.148 5 C 0.504 3.496 6 O -0.574 6.574 7 N -0.616 5.616 8 C 0.109 3.891 9 C -0.117 4.117 10 C 0.080 3.920 11 H 0.057 0.943 12 O -0.392 6.392 13 C 0.053 3.947 14 C 0.147 3.853 15 N -0.606 5.606 16 C -0.263 4.263 17 H 0.072 0.928 18 C -0.047 4.047 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.291 1.291 22 H -0.287 1.287 23 H -0.264 1.264 24 C 0.134 3.866 25 H 0.000 1.000 26 C 0.142 3.858 27 C -0.142 4.142 28 C -0.131 4.131 29 C -0.129 4.129 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.143 0.857 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.109 0.891 41 H 0.069 0.931 42 H -0.006 1.006 43 H 0.251 0.749 44 H 0.069 0.931 45 H 0.053 0.947 46 H 0.121 0.879 47 H 0.082 0.918 48 H 0.069 0.931 49 H 0.088 0.912 50 H 0.040 0.960 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 16.504 18.065 25.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.304 6.304 3 C 0.054 3.946 4 C -0.187 4.187 5 C 0.294 3.706 6 O -0.453 6.453 7 N -0.350 5.350 8 C -0.012 4.012 9 C -0.155 4.155 10 C 0.021 3.979 11 H 0.075 0.925 12 O -0.311 6.311 13 C -0.025 4.025 14 C 0.021 3.979 15 N -0.332 5.332 16 C -0.392 4.392 17 H 0.090 0.910 18 C -0.242 4.242 19 N -0.581 5.581 20 Si 0.794 3.206 21 H -0.218 1.218 22 H -0.213 1.213 23 H -0.189 1.189 24 C 0.027 3.973 25 H 0.017 0.983 26 C 0.018 3.982 27 C -0.180 4.180 28 C -0.169 4.169 29 C -0.167 4.167 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.135 0.865 35 H 0.111 0.889 36 H 0.150 0.850 37 H 0.134 0.866 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.127 0.873 41 H 0.087 0.913 42 H 0.012 0.988 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.071 0.929 46 H 0.139 0.861 47 H 0.100 0.900 48 H 0.088 0.912 49 H 0.107 0.893 50 H 0.059 0.941 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.545 15.701 18.039 25.077 hybrid contribution 1.065 -1.512 -1.111 2.158 sum -6.480 14.189 16.929 23.020 Atomic orbital electron populations 1.22887 0.80467 1.03266 1.00822 1.88021 1.20644 1.26980 1.94752 1.22485 0.95594 0.83620 0.92878 1.22351 1.02797 1.02233 0.91353 1.21418 0.80275 0.84565 0.84374 1.90735 1.45873 1.24401 1.84273 1.48423 1.53918 1.24137 1.08550 1.22079 0.95368 0.84011 0.99726 1.21903 0.98117 1.03606 0.91909 1.22622 0.93181 0.94950 0.87154 0.92507 1.87742 1.36561 1.89255 1.17589 1.23166 0.96653 0.95542 0.87109 1.21292 0.93563 0.93197 0.89811 1.44351 1.12212 1.73927 1.02671 1.19421 0.87066 1.16047 1.16698 0.90992 1.25873 1.01669 0.95924 1.00774 1.70165 1.33638 1.25819 1.28516 0.85301 0.80388 0.78205 0.76740 1.21816 1.21299 1.18889 1.21557 0.93356 0.94663 0.87737 0.98275 1.21164 0.94087 0.98153 0.84784 1.23530 0.98750 1.01267 0.94424 1.22745 0.97705 1.01210 0.95216 1.22989 0.94503 1.01848 0.97319 0.91255 0.94258 0.89889 0.83962 0.86549 0.88949 0.85044 0.86637 0.91714 0.93081 0.87297 0.91269 0.98801 0.93949 0.91245 0.92871 0.86098 0.89972 0.91198 0.89310 0.94077 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.55 113.37 1.20 1.62 16 2 O -0.38 -10.78 9.98 -137.97 -1.38 -12.16 16 3 C 0.09 1.99 0.38 -10.27 0.00 1.99 16 4 C -0.15 -2.71 3.46 29.85 0.10 -2.61 16 5 C 0.50 15.65 7.42 87.66 0.65 16.30 16 6 O -0.57 -24.62 14.33 7.98 0.11 -24.50 16 7 N -0.62 -18.48 2.98 -818.57 -2.44 -20.92 16 8 C 0.11 2.02 6.27 86.44 0.54 2.56 16 9 C -0.12 -2.69 5.82 30.65 0.18 -2.51 16 10 C 0.08 2.77 2.48 30.80 0.08 2.84 16 11 H 0.06 1.94 8.13 -2.39 -0.02 1.92 16 12 O -0.39 -14.80 10.49 -148.98 -1.56 -16.36 16 13 C 0.05 2.05 6.96 72.05 0.50 2.55 16 14 C 0.15 7.36 5.40 86.28 0.47 7.83 16 15 N -0.61 -31.75 3.03 -672.98 -2.04 -33.79 16 16 C -0.26 -14.79 8.85 84.03 0.74 -14.05 16 17 H 0.07 3.95 6.30 -2.91 -0.02 3.93 16 18 C -0.05 -2.69 5.01 84.86 0.43 -2.26 16 19 N -0.94 -56.87 11.16 21.65 0.24 -56.63 16 20 Si 0.97 46.23 29.58 68.60 2.03 48.26 16 21 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 23 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 24 C 0.13 5.94 3.06 45.22 0.14 6.08 16 25 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 26 C 0.14 5.80 4.49 86.27 0.39 6.19 16 27 C -0.14 -1.79 7.18 31.12 0.22 -1.57 16 28 C -0.13 -2.14 8.02 31.12 0.25 -1.89 16 29 C -0.13 -2.95 6.39 31.12 0.20 -2.75 16 30 H 0.07 0.93 6.61 -2.38 -0.02 0.92 16 31 H 0.04 0.75 6.92 -2.39 -0.02 0.74 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.14 1.39 7.50 -2.38 -0.02 1.38 16 34 H 0.12 1.66 6.58 -2.39 -0.02 1.65 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.13 1.26 5.93 -2.39 -0.01 1.25 16 37 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.11 3.58 8.14 -2.39 -0.02 3.57 16 41 H 0.07 3.78 6.27 -2.39 -0.01 3.77 16 42 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 44 H 0.07 2.81 7.37 -2.39 -0.02 2.79 16 45 H 0.05 2.67 6.81 -2.39 -0.02 2.65 16 46 H 0.12 0.81 8.01 -2.39 -0.02 0.79 16 47 H 0.08 0.92 6.74 -2.39 -0.02 0.90 16 48 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.04 1.27 8.13 -2.39 -0.02 1.25 16 51 H 0.10 1.95 8.10 -2.38 -0.02 1.93 16 Total: -1.00 -81.50 383.73 1.96 -79.55 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.92 Total: 16.22 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 6.08 Total: 20.34 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -4.24 Total: -111.34 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -2.82 Total: -53.02 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -81.50 1.96 -79.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177005640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.586 kcal (2) G-P(sol) polarization free energy of solvation -81.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds