Wall clock time and date at job start Tue Mar 31 2020 21:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99897 * 2 1 4 4 C 1.52994 * 112.85332 * 299.21958 * 3 2 1 5 5 C 1.50698 * 109.47328 * 294.60792 * 4 3 2 6 6 O 1.21288 * 119.99635 * 355.44613 * 5 4 3 7 7 N 1.34775 * 120.00244 * 175.45034 * 5 4 3 8 8 C 1.46506 * 120.86406 * 358.78380 * 7 5 4 9 9 C 1.53376 * 108.79088 * 127.37533 * 8 7 5 10 10 C 1.52781 * 108.81615 * 54.89023 * 9 8 7 11 11 H 1.09002 * 109.34700 * 57.15520 * 10 9 8 12 12 O 1.42604 * 111.11051 * 177.47414 * 10 9 8 13 13 C 1.43148 * 113.63144 * 183.61146 * 12 10 9 14 14 C 1.53196 * 109.73834 * 298.30494 * 13 12 10 15 15 N 1.47343 * 108.79939 * 51.21495 * 14 13 12 16 16 C 1.36937 * 121.30589 * 129.73616 * 15 14 13 17 17 H 1.07998 * 120.00133 * 207.80216 * 16 15 14 18 18 C 1.38817 * 119.99890 * 27.80088 * 16 15 14 19 19 N 1.31614 * 120.00076 * 25.34028 * 18 16 15 20 20 Si 1.86794 * 119.99867 * 205.33813 * 18 16 15 21 21 H 1.48497 * 109.47199 * 94.99164 * 20 18 16 22 22 H 1.48505 * 109.47282 * 214.99004 * 20 18 16 23 23 H 1.48498 * 109.47434 * 334.98702 * 20 18 16 24 24 C 1.46876 * 117.39398 * 309.75870 * 15 14 13 25 25 H 1.09006 * 109.65081 * 292.34939 * 24 15 14 26 26 C 1.47131 * 120.41081 * 180.02562 * 7 5 4 27 27 C 1.53786 * 113.61509 * 70.41933 * 3 2 1 28 28 C 1.53957 * 87.02037 * 89.22244 * 27 3 2 29 29 C 1.53782 * 113.61026 * 168.02263 * 3 2 1 30 30 H 1.09001 * 109.47279 * 185.52320 * 1 2 3 31 31 H 1.09006 * 109.47283 * 305.52344 * 1 2 3 32 32 H 1.08997 * 109.47327 * 65.52163 * 1 2 3 33 33 H 1.08999 * 109.47168 * 174.60925 * 4 3 2 34 34 H 1.09002 * 109.47161 * 54.60936 * 4 3 2 35 35 H 1.09001 * 108.86845 * 8.09742 * 8 7 5 36 36 H 1.09001 * 110.59607 * 247.68610 * 8 7 5 37 37 H 1.08997 * 109.57784 * 295.08361 * 9 8 7 38 38 H 1.09002 * 109.57827 * 174.68791 * 9 8 7 39 39 H 1.08999 * 109.42502 * 178.22703 * 13 12 10 40 40 H 1.08997 * 109.38802 * 58.36124 * 13 12 10 41 41 H 1.09004 * 109.58111 * 291.41842 * 14 13 12 42 42 H 1.08999 * 109.69467 * 171.07952 * 14 13 12 43 43 H 0.96996 * 120.00395 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.72864 * 113.54574 * 26 7 5 45 45 H 1.09001 * 109.72665 * 352.87293 * 26 7 5 46 46 H 1.08992 * 113.61442 * 203.74841 * 27 3 2 47 47 H 1.09003 * 113.61232 * 334.64464 * 27 3 2 48 48 H 1.08993 * 113.53733 * 270.81283 * 28 27 3 49 49 H 1.09003 * 113.66097 * 139.93296 * 28 27 3 50 50 H 1.09000 * 113.61727 * 25.35071 * 29 3 2 51 51 H 1.09003 * 113.61404 * 156.25643 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.6231 2.1281 -1.2304 5 6 2.2018 1.4873 -2.4656 6 8 2.9270 0.5205 -2.3641 7 7 1.9135 1.9887 -3.6830 8 6 1.0188 3.1395 -3.8292 9 6 1.7230 4.2086 -4.6740 10 6 2.1621 3.5815 -5.9962 11 1 1.2929 3.1628 -6.5035 12 8 2.7728 4.5501 -6.8462 13 6 3.1317 4.0384 -8.1340 14 6 4.1587 2.9128 -7.9758 15 7 3.6482 1.9387 -6.9952 16 6 3.6197 0.5980 -7.2726 17 1 2.8823 -0.0353 -6.8019 18 6 4.5385 0.0530 -8.1591 19 7 5.6998 0.6427 -8.3484 20 14 4.1266 -1.5173 -9.0831 21 1 3.5743 -1.1755 -10.4185 22 1 5.3577 -2.3308 -9.2501 23 1 3.1205 -2.2940 -8.3153 24 6 3.1706 2.4620 -5.7086 25 1 4.0108 2.8622 -5.1410 26 6 2.4730 1.3698 -4.8948 27 6 1.8294 2.0603 1.3276 28 6 3.1517 1.4156 1.7816 29 6 3.5200 1.3075 0.2924 30 1 -0.3634 -1.0229 0.0989 31 1 -0.3634 0.5971 0.8364 32 1 -0.3634 0.4258 -0.9353 33 1 2.0149 3.1402 -1.1287 34 1 0.5371 2.1658 -1.3154 35 1 0.7990 3.5431 -2.8408 36 1 0.0900 2.8436 -4.3171 37 1 2.5962 4.5807 -4.1382 38 1 1.0348 5.0308 -4.8703 39 1 3.5616 4.8395 -8.7354 40 1 2.2420 3.6504 -8.6299 41 1 5.1029 3.3268 -7.6219 42 1 4.3130 2.4188 -8.9351 43 1 6.3420 0.2617 -8.9675 44 1 1.6713 0.9262 -5.4852 45 1 3.1940 0.6013 -4.6162 46 1 1.8846 3.1439 1.2247 47 1 0.9628 1.7323 1.9018 48 1 3.0200 0.4501 2.2700 49 1 3.7974 2.0907 2.3432 50 1 4.0164 0.3726 0.0322 51 1 4.0384 2.1850 -0.0939 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177005643.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:49 Heat of formation + Delta-G solvation = -64.028425 kcal Electronic energy + Delta-G solvation = -31835.578035 eV Core-core repulsion = 27737.150774 eV Total energy + Delta-G solvation = -4098.427261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.65766 -39.57364 -38.24291 -35.99128 -35.65564 -34.69428 -32.02448 -31.40161 -30.56430 -29.59651 -27.22729 -27.00619 -25.63957 -25.14443 -23.94428 -23.22736 -21.95292 -21.32069 -19.78506 -19.53114 -18.80642 -17.09619 -16.88270 -16.42438 -15.97228 -15.63690 -15.37715 -15.18146 -15.07304 -14.83892 -14.59472 -14.29049 -14.09234 -13.90432 -13.57513 -13.47076 -13.05923 -12.91110 -12.68160 -12.57572 -12.46215 -12.19622 -11.88844 -11.69540 -11.47916 -11.35464 -11.12748 -11.07275 -10.92225 -10.90350 -10.82230 -10.64821 -10.28515 -10.22978 -10.20949 -9.97723 -9.65264 -9.58681 -9.31930 -9.02288 -8.48442 -8.30166 -6.76381 -5.86915 -3.26483 2.90007 3.15356 3.36165 3.44731 3.46207 3.61646 4.19064 4.27163 4.44021 4.46442 4.55966 4.74403 4.80467 4.89451 5.10985 5.13495 5.16531 5.20932 5.24140 5.32152 5.35793 5.37265 5.39022 5.51112 5.55935 5.58038 5.62533 5.69037 5.73072 5.74320 5.90859 5.93110 6.06385 6.09114 6.13289 6.18479 6.19164 6.21869 6.29079 6.43790 6.68084 6.74066 6.85586 7.04632 7.20517 7.37073 7.67995 7.76182 7.84496 8.30126 8.48492 9.07129 9.73298 10.32274 11.21167 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013318 B = 0.003518 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.850305 B = 7958.191808 C = 9124.217006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.346 6.346 3 C 0.110 3.890 4 C -0.159 4.159 5 C 0.514 3.486 6 O -0.517 6.517 7 N -0.615 5.615 8 C 0.113 3.887 9 C -0.124 4.124 10 C 0.077 3.923 11 H 0.052 0.948 12 O -0.389 6.389 13 C 0.041 3.959 14 C 0.144 3.856 15 N -0.585 5.585 16 C -0.266 4.266 17 H 0.072 0.928 18 C 0.013 3.987 19 N -0.889 5.889 20 Si 0.895 3.105 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.276 1.276 24 C 0.138 3.862 25 H 0.035 0.965 26 C 0.125 3.875 27 C -0.164 4.164 28 C -0.137 4.137 29 C -0.113 4.113 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.029 0.971 42 H 0.083 0.917 43 H 0.255 0.745 44 H 0.069 0.931 45 H 0.102 0.898 46 H 0.089 0.911 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.068 0.932 50 H 0.085 0.915 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.967 7.821 15.503 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.264 6.264 3 C 0.070 3.930 4 C -0.199 4.199 5 C 0.301 3.699 6 O -0.392 6.392 7 N -0.350 5.350 8 C -0.011 4.011 9 C -0.163 4.163 10 C 0.017 3.983 11 H 0.070 0.930 12 O -0.309 6.309 13 C -0.037 4.037 14 C 0.018 3.982 15 N -0.310 5.310 16 C -0.395 4.395 17 H 0.090 0.910 18 C -0.188 4.188 19 N -0.531 5.531 20 Si 0.725 3.275 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.201 1.201 24 C 0.031 3.969 25 H 0.053 0.947 26 C 0.003 3.997 27 C -0.202 4.202 28 C -0.175 4.175 29 C -0.150 4.150 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.060 0.940 41 H 0.047 0.953 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.120 0.880 46 H 0.107 0.893 47 H 0.089 0.911 48 H 0.101 0.899 49 H 0.086 0.914 50 H 0.104 0.896 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.261 7.224 15.516 20.487 hybrid contribution -0.436 -0.667 -0.913 1.211 sum -11.697 6.557 14.603 19.826 Atomic orbital electron populations 1.22740 0.81944 1.02612 0.99725 1.88047 1.18806 1.25108 1.94445 1.22233 0.96000 0.83584 0.91216 1.22253 1.02537 1.01097 0.94024 1.20334 0.81447 0.84173 0.83932 1.90745 1.36389 1.26103 1.85915 1.48209 1.48234 1.31832 1.06760 1.21603 0.92882 0.86182 1.00415 1.21858 1.01171 0.97850 0.95412 1.22443 0.95456 0.90093 0.90298 0.93021 1.87736 1.80523 1.36442 1.26157 1.23276 0.98747 0.97919 0.83721 1.21335 0.93091 0.88551 0.95248 1.44038 1.74218 1.03136 1.09603 1.19080 1.11130 0.83799 1.25499 0.91049 1.24996 0.94076 0.97699 1.02039 1.70154 1.04695 1.41675 1.36588 0.86381 0.77652 0.83130 0.80363 1.21391 1.21732 1.20141 1.21273 0.94463 0.92389 0.88811 0.94735 1.21690 0.98555 0.96127 0.83316 1.23600 0.99034 1.00250 0.97266 1.22830 0.96617 1.01050 0.96967 1.22881 0.93600 1.03806 0.94757 0.89669 0.94073 0.94233 0.87895 0.89105 0.89951 0.91238 0.90864 0.90385 0.90012 0.94008 0.95251 0.89866 0.93533 0.91287 0.87982 0.89276 0.91058 0.89910 0.91375 0.89630 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.47 101.05 1.06 1.32 16 2 O -0.35 -4.71 10.09 -42.84 -0.43 -5.14 16 3 C 0.11 1.28 0.38 -89.81 -0.03 1.25 16 4 C -0.16 -1.74 3.31 -27.89 -0.09 -1.83 16 5 C 0.51 8.16 7.48 -10.99 -0.08 8.07 16 6 O -0.52 -10.47 14.21 -2.06 -0.03 -10.50 16 7 N -0.62 -9.61 2.95 -172.93 -0.51 -10.13 16 8 C 0.11 1.30 6.32 -3.84 -0.02 1.28 16 9 C -0.12 -1.65 5.81 -26.65 -0.15 -1.80 16 10 C 0.08 1.37 2.49 -26.63 -0.07 1.31 16 11 H 0.05 0.94 8.13 -51.93 -0.42 0.52 16 12 O -0.39 -7.55 10.49 -35.23 -0.37 -7.92 16 13 C 0.04 0.80 6.95 37.26 0.26 1.06 16 14 C 0.14 3.39 5.51 -3.48 -0.02 3.37 16 15 N -0.59 -14.57 3.03 -164.33 -0.50 -15.07 16 16 C -0.27 -7.19 8.82 -15.06 -0.13 -7.32 16 17 H 0.07 1.90 6.41 -52.49 -0.34 1.56 16 18 C 0.01 0.35 4.70 -17.43 -0.08 0.26 16 19 N -0.89 -25.79 11.87 55.49 0.66 -25.13 16 20 Si 0.90 21.62 29.62 -169.99 -5.04 16.58 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.14 2.95 3.00 -67.50 -0.20 2.75 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 C 0.12 2.47 4.50 -3.68 -0.02 2.46 16 27 C -0.16 -1.41 7.21 -25.82 -0.19 -1.60 16 28 C -0.14 -1.31 8.02 -25.82 -0.21 -1.52 16 29 C -0.11 -1.38 6.28 -25.92 -0.16 -1.55 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.32 6.86 -51.93 -0.36 -0.04 16 32 H 0.04 0.38 6.89 -51.93 -0.36 0.02 16 33 H 0.10 0.91 7.84 -51.93 -0.41 0.50 16 34 H 0.09 0.80 6.31 -51.93 -0.33 0.48 16 35 H 0.08 0.68 5.91 -51.93 -0.31 0.38 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 2.12 6.58 -51.93 -0.34 1.78 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.07 1.37 7.42 -51.93 -0.39 0.99 16 45 H 0.10 2.38 6.83 -51.93 -0.35 2.03 16 46 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 47 H 0.07 0.57 7.01 -51.93 -0.36 0.20 16 48 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.08 1.27 8.06 -51.93 -0.42 0.85 16 51 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 384.97 15.07 5.80 5.80 Total: -1.00 -33.11 384.97 -9.14 -42.25 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -8.58 Total: 1.76 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -0.15 Total: 7.50 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.35 Total: -50.33 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.83 Total: -23.57 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.04 Total: 16.58 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.11 -9.14 -42.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177005643.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.777 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds