Wall clock time and date at job start Tue Mar 31 2020 21:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99976 * 2 1 4 4 C 1.52998 * 109.46752 * 180.02562 * 3 2 1 5 5 C 1.53001 * 115.54966 * 294.76748 * 4 3 2 6 6 C 1.50700 * 109.47367 * 278.61251 * 5 4 3 7 7 O 1.21287 * 119.99745 * 4.56602 * 6 5 4 8 8 N 1.34768 * 120.00264 * 184.56168 * 6 5 4 9 9 C 1.46847 * 120.41016 * 359.73002 * 8 6 5 10 10 C 1.52916 * 109.49428 * 232.19047 * 9 8 6 11 11 C 1.52784 * 108.89521 * 306.41253 * 10 9 8 12 12 H 1.09001 * 109.34366 * 302.70508 * 11 10 9 13 13 O 1.42603 * 111.11307 * 182.39174 * 11 10 9 14 14 C 1.43143 * 113.63415 * 176.38588 * 13 11 10 15 15 C 1.53192 * 109.73904 * 61.68986 * 14 13 11 16 16 N 1.47351 * 108.80080 * 308.78647 * 15 14 13 17 17 C 1.36943 * 121.30861 * 230.25757 * 16 15 14 18 18 H 1.08004 * 119.99320 * 151.12469 * 17 16 15 19 19 C 1.38804 * 119.99968 * 331.12928 * 17 16 15 20 20 N 1.31619 * 120.00294 * 348.14611 * 19 17 16 21 21 Si 1.86799 * 119.99883 * 168.14150 * 19 17 16 22 22 H 1.48493 * 109.47264 * 90.00221 * 21 19 17 23 23 H 1.48502 * 109.47077 * 210.00181 * 21 19 17 24 24 H 1.48500 * 109.47153 * 329.99906 * 21 19 17 25 25 C 1.46880 * 117.38749 * 50.24599 * 16 15 14 26 26 H 1.08996 * 110.20450 * 67.96588 * 25 16 15 27 27 C 1.47129 * 120.41444 * 180.02562 * 8 6 5 28 28 C 1.53003 * 117.51934 * 80.47404 * 4 3 2 29 29 C 1.53000 * 60.00116 * 107.47735 * 28 4 3 30 30 H 1.09005 * 109.47609 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47179 * 299.99792 * 1 2 3 32 32 H 1.08999 * 109.47476 * 59.99383 * 1 2 3 33 33 H 1.08997 * 109.47217 * 60.00479 * 3 2 1 34 34 H 1.08999 * 109.47165 * 299.99900 * 3 2 1 35 35 H 1.09002 * 109.47214 * 38.61978 * 5 4 3 36 36 H 1.09005 * 109.46773 * 158.61761 * 5 4 3 37 37 H 1.08995 * 109.50856 * 352.17819 * 9 8 6 38 38 H 1.08999 * 109.51249 * 112.31847 * 9 8 6 39 39 H 1.09005 * 109.65231 * 186.52028 * 10 9 8 40 40 H 1.08998 * 109.53492 * 66.23623 * 10 9 8 41 41 H 1.08997 * 109.42636 * 181.76888 * 14 13 11 42 42 H 1.08997 * 109.42904 * 301.66114 * 14 13 11 43 43 H 1.08995 * 109.58480 * 68.58908 * 15 14 13 44 44 H 1.09005 * 109.58432 * 188.99751 * 15 14 13 45 45 H 0.97003 * 120.00301 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.72716 * 246.43365 * 27 8 6 47 47 H 1.08997 * 109.72655 * 7.05655 * 27 8 6 48 48 H 1.08997 * 117.49734 * 214.97127 * 28 4 3 49 49 H 1.09004 * 117.49468 * 359.97438 * 28 4 3 50 50 H 1.08999 * 117.49905 * 252.50980 * 29 28 4 51 51 H 1.08998 * 117.49421 * 107.49146 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 4.1481 0.5557 1.2524 6 6 4.2559 1.5975 2.3360 7 8 3.8047 2.7088 2.1558 8 7 4.8536 1.2943 3.5052 9 6 5.3977 -0.0501 3.7352 10 6 4.8468 -0.6056 5.0490 11 6 5.1222 0.4001 6.1657 12 1 6.1934 0.5938 6.2210 13 8 4.6754 -0.0962 7.4257 14 6 4.9809 0.7691 8.5243 15 6 4.2789 2.1170 8.3321 16 7 4.5872 2.6249 6.9837 17 6 5.0449 3.9013 6.7914 18 1 5.6848 4.1245 5.9505 19 6 4.6864 4.9079 7.6774 20 7 3.7314 4.6996 8.5588 21 14 5.5596 6.5582 7.6189 22 1 4.8427 7.4648 6.6866 23 1 5.5765 7.1577 8.9774 24 1 6.9540 6.3639 7.1463 25 6 4.3847 1.7085 5.8538 26 1 3.3222 1.5073 5.7181 27 6 4.9634 2.3043 4.5694 28 6 4.2219 0.9051 -1.3392 29 6 4.3314 2.2898 -0.6977 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.5139 -0.2616 1.5959 36 1 5.1408 0.1714 1.0178 37 1 5.1075 -0.7056 2.9143 38 1 6.4849 0.0022 3.7933 39 1 5.3359 -1.5518 5.2807 40 1 3.7722 -0.7631 4.9560 41 1 4.6387 0.3113 9.4524 42 1 6.0584 0.9261 8.5734 43 1 3.2018 1.9861 8.4358 44 1 4.6365 2.8251 9.0797 45 1 3.4806 5.4032 9.1777 46 1 6.0107 2.5638 4.7238 47 1 4.4009 3.1953 4.2905 48 1 5.1099 0.2731 -1.3271 49 1 3.5868 0.8069 -2.2196 50 1 3.7684 3.1028 -1.1562 51 1 5.2915 2.5688 -0.2637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177013243.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:46 Heat of formation + Delta-G solvation = -87.037348 kcal Electronic energy + Delta-G solvation = -31472.896203 eV Core-core repulsion = 27373.471200 eV Total energy + Delta-G solvation = -4099.425003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.59385 -40.39983 -39.21979 -37.66769 -37.16585 -36.55381 -33.59611 -33.00571 -31.67715 -30.47560 -29.09516 -28.58451 -26.64009 -26.27308 -25.45745 -23.74091 -23.26110 -22.87510 -21.52839 -20.82612 -19.53132 -18.70102 -18.29108 -17.38426 -17.17788 -17.04052 -16.95721 -16.85598 -16.52702 -16.18406 -16.12374 -15.58649 -15.48803 -15.24464 -14.85999 -14.70404 -14.52529 -14.42477 -13.98964 -13.86953 -13.34454 -13.30236 -13.04452 -12.96177 -12.84443 -12.69740 -12.53386 -12.41355 -12.35262 -12.29189 -12.08617 -11.98401 -11.92018 -11.74470 -11.28601 -11.23687 -11.02942 -10.75966 -10.69120 -10.55547 -10.43829 -9.65205 -8.74279 -7.93522 -5.44972 1.42236 1.43657 1.52539 1.67591 1.92328 2.44107 2.58498 2.82476 3.10016 3.22598 3.43509 3.65035 3.68093 3.80781 3.87799 3.96824 4.02575 4.09390 4.17673 4.19084 4.28344 4.38441 4.40135 4.47999 4.49997 4.53535 4.55215 4.57513 4.59053 4.69050 4.74037 4.82684 4.83766 4.84409 4.85656 4.94336 5.00626 5.08133 5.10055 5.12232 5.15343 5.28966 5.30709 5.45973 5.53744 5.59726 6.18038 6.24434 6.33072 6.47428 7.02826 7.23672 7.69637 8.25545 9.12437 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012076 B = 0.003461 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.080302 B = 8087.671394 C = 9094.484772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.103 3.897 4 C -0.128 4.128 5 C -0.089 4.089 6 C 0.506 3.494 7 O -0.580 6.580 8 N -0.614 5.614 9 C 0.109 3.891 10 C -0.117 4.117 11 C 0.081 3.919 12 H 0.057 0.943 13 O -0.393 6.393 14 C 0.052 3.948 15 C 0.147 3.853 16 N -0.606 5.606 17 C -0.262 4.262 18 H 0.074 0.926 19 C -0.047 4.047 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.290 1.290 23 H -0.288 1.288 24 H -0.265 1.265 25 C 0.135 3.865 26 H 0.000 1.000 27 C 0.140 3.860 28 C -0.137 4.137 29 C -0.160 4.160 30 H 0.104 0.896 31 H 0.032 0.968 32 H 0.051 0.949 33 H 0.029 0.971 34 H 0.057 0.943 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.050 0.950 43 H -0.006 1.006 44 H 0.072 0.928 45 H 0.251 0.749 46 H 0.069 0.931 47 H 0.057 0.943 48 H 0.118 0.882 49 H 0.104 0.896 50 H 0.089 0.911 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.931 -15.205 -17.248 23.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.026 3.974 4 C -0.128 4.128 5 C -0.128 4.128 6 C 0.296 3.704 7 O -0.459 6.459 8 N -0.348 5.348 9 C -0.012 4.012 10 C -0.156 4.156 11 C 0.021 3.979 12 H 0.075 0.925 13 O -0.313 6.313 14 C -0.026 4.026 15 C 0.021 3.979 16 N -0.331 5.331 17 C -0.391 4.391 18 H 0.091 0.909 19 C -0.242 4.242 20 N -0.582 5.582 21 Si 0.795 3.205 22 H -0.217 1.217 23 H -0.214 1.214 24 H -0.189 1.189 25 C 0.027 3.973 26 H 0.017 0.983 27 C 0.017 3.983 28 C -0.174 4.174 29 C -0.198 4.198 30 H 0.122 0.878 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.111 0.889 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.069 0.931 43 H 0.012 0.988 44 H 0.090 0.910 45 H 0.060 0.940 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.136 0.864 49 H 0.123 0.877 50 H 0.108 0.892 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.667 -14.844 -17.209 22.882 hybrid contribution -0.519 2.234 0.913 2.468 sum 2.148 -12.610 -16.296 20.717 Atomic orbital electron populations 1.22904 0.80020 1.03940 1.00226 1.87803 1.20759 1.27834 1.95451 1.21867 0.91570 0.84333 0.99621 1.20964 0.92051 1.05704 0.94111 1.21233 1.04537 0.96363 0.90712 1.21492 0.76087 0.89512 0.83337 1.90680 1.48921 1.25459 1.80836 1.48397 1.58403 1.13693 1.14305 1.21972 0.99681 0.81544 0.98002 1.21819 1.02692 0.98853 0.92209 1.22533 0.96960 0.93504 0.84865 0.92541 1.87744 1.81773 1.45999 1.15735 1.23179 0.98974 0.90987 0.89443 1.21306 0.95250 0.93526 0.87777 1.44313 1.77324 1.10543 1.00934 1.19438 1.22913 0.85060 1.11719 0.90879 1.25885 0.97635 1.00982 0.99728 1.70148 1.30756 1.33937 1.23377 0.85281 0.78821 0.79734 0.76683 1.21731 1.21405 1.18936 1.21422 0.95454 0.91787 0.88601 0.98251 1.21196 1.00417 0.91132 0.85559 1.23195 1.02443 0.97701 0.94065 1.22879 1.01073 0.92781 1.03032 0.87758 0.94886 0.93035 0.95234 0.92465 0.86827 0.85419 0.85336 0.88932 0.86684 0.91777 0.87340 0.93150 0.98806 0.91015 0.93954 0.91254 0.92416 0.86391 0.87746 0.89205 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.40 -9.00 10.44 -148.98 -1.56 -10.56 16 3 C 0.10 2.46 5.73 71.98 0.41 2.87 16 4 C -0.13 -2.74 1.27 -52.18 -0.07 -2.80 16 5 C -0.09 -1.81 3.98 29.85 0.12 -1.69 16 6 C 0.51 15.57 7.55 87.66 0.66 16.23 16 7 O -0.58 -23.43 14.42 -3.05 -0.04 -23.47 16 8 N -0.61 -18.57 2.99 -819.60 -2.45 -21.02 16 9 C 0.11 2.16 6.25 86.29 0.54 2.70 16 10 C -0.12 -2.83 5.81 30.49 0.18 -2.65 16 11 C 0.08 2.82 2.48 30.66 0.08 2.89 16 12 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 13 O -0.39 -15.02 10.49 -148.98 -1.56 -16.58 16 14 C 0.05 2.02 6.95 72.05 0.50 2.52 16 15 C 0.15 7.35 5.40 86.28 0.47 7.82 16 16 N -0.61 -31.52 3.04 -673.96 -2.05 -33.57 16 17 C -0.26 -14.57 8.86 84.03 0.74 -13.82 16 18 H 0.07 3.95 6.29 -2.91 -0.02 3.93 16 19 C -0.05 -2.66 5.06 84.86 0.43 -2.23 16 20 N -0.94 -56.33 11.05 21.65 0.24 -56.09 16 21 Si 0.97 45.73 29.57 68.60 2.03 47.76 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 24 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 25 C 0.13 5.94 3.02 45.04 0.14 6.08 16 26 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 27 C 0.14 5.68 4.50 86.24 0.39 6.07 16 28 C -0.14 -2.09 9.90 30.60 0.30 -1.79 16 29 C -0.16 -3.35 9.06 30.60 0.28 -3.08 16 30 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.03 0.89 7.73 -2.39 -0.02 0.87 16 34 H 0.06 1.22 8.09 -2.39 -0.02 1.20 16 35 H 0.11 2.13 7.60 -2.39 -0.02 2.12 16 36 H 0.13 1.68 7.53 -2.38 -0.02 1.66 16 37 H 0.13 1.55 5.93 -2.39 -0.01 1.53 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 43 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 44 H 0.07 3.92 6.22 -2.38 -0.01 3.90 16 45 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 46 H 0.07 2.78 7.36 -2.39 -0.02 2.76 16 47 H 0.06 2.82 6.81 -2.39 -0.02 2.80 16 48 H 0.12 1.29 8.07 -2.39 -0.02 1.28 16 49 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 50 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 51 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -75.65 394.07 1.92 -73.72 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.90 Total: 19.02 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 6.41 Total: 20.79 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -4.26 Total: -110.68 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -3.16 Total: -50.61 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -75.65 1.92 -73.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177013243.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.313 kcal (2) G-P(sol) polarization free energy of solvation -75.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds