Wall clock time and date at job start Tue Mar 31 2020 21:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00087 * 2 1 4 4 C 1.53002 * 109.47133 * 180.02562 * 3 2 1 5 5 C 1.52996 * 115.54967 * 304.12806 * 4 3 2 6 6 C 1.50700 * 109.46998 * 294.50334 * 5 4 3 7 7 O 1.21280 * 120.00103 * 4.28600 * 6 5 4 8 8 N 1.34777 * 119.99774 * 184.28831 * 6 5 4 9 9 C 1.46981 * 120.72430 * 0.02562 * 8 6 5 10 10 C 1.53156 * 108.43698 * 125.46864 * 9 8 6 11 11 C 1.52508 * 109.79615 * 54.53827 * 10 9 8 12 12 H 1.09001 * 108.93544 * 180.98713 * 11 10 9 13 13 O 1.42695 * 110.61628 * 61.28768 * 11 10 9 14 14 C 1.43069 * 113.88111 * 174.66398 * 13 11 10 15 15 C 1.53233 * 109.44479 * 61.64444 * 14 13 11 16 16 N 1.47179 * 108.69008 * 308.40473 * 15 14 13 17 17 C 1.36928 * 121.22451 * 230.96248 * 16 15 14 18 18 H 1.08005 * 119.99853 * 145.16453 * 17 16 15 19 19 C 1.38817 * 120.00479 * 325.43898 * 17 16 15 20 20 N 1.31625 * 119.99778 * 2.43512 * 19 17 16 21 21 Si 1.86799 * 120.00129 * 182.42950 * 19 17 16 22 22 H 1.48490 * 109.47097 * 60.00596 * 21 19 17 23 23 H 1.48506 * 109.46768 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47256 * 299.99993 * 21 19 17 25 25 C 1.47593 * 117.54777 * 51.23875 * 16 15 14 26 26 H 1.08998 * 110.31229 * 187.41880 * 25 16 15 27 27 C 1.46790 * 120.71776 * 180.02562 * 8 6 5 28 28 C 1.53001 * 117.49456 * 89.79506 * 4 3 2 29 29 C 1.52997 * 117.49685 * 158.45254 * 4 3 2 30 30 H 1.08998 * 109.47029 * 59.99893 * 1 2 3 31 31 H 1.08998 * 109.47380 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46600 * 300.00038 * 1 2 3 33 33 H 1.08995 * 109.47301 * 60.00200 * 3 2 1 34 34 H 1.09004 * 109.46793 * 300.00310 * 3 2 1 35 35 H 1.09004 * 109.46898 * 174.50419 * 5 4 3 36 36 H 1.09002 * 109.47328 * 54.50601 * 5 4 3 37 37 H 1.08999 * 109.64257 * 5.78278 * 9 8 6 38 38 H 1.08997 * 109.64295 * 245.15231 * 9 8 6 39 39 H 1.08997 * 109.41762 * 294.43552 * 10 9 8 40 40 H 1.09001 * 109.41589 * 174.63625 * 10 9 8 41 41 H 1.08996 * 109.47710 * 301.64878 * 14 13 11 42 42 H 1.08999 * 109.47606 * 181.63352 * 14 13 11 43 43 H 1.09004 * 109.59664 * 188.64597 * 15 14 13 44 44 H 1.08998 * 109.73889 * 68.25024 * 15 14 13 45 45 H 0.96994 * 120.00118 * 180.02562 * 20 19 17 46 46 H 1.09007 * 109.52517 * 354.17956 * 27 8 6 47 47 H 1.09004 * 109.52088 * 114.35909 * 27 8 6 48 48 H 1.09007 * 117.49662 * 215.00234 * 28 4 3 49 49 H 1.08996 * 117.50340 * 0.02728 * 28 4 3 50 50 H 1.09003 * 117.50336 * 359.97438 * 29 4 3 51 51 H 1.09004 * 117.49309 * 144.97388 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1326 0.3603 1.1416 6 6 3.8723 1.0562 2.4527 7 8 3.2023 2.0667 2.4803 8 7 4.3841 0.5555 3.5946 9 6 5.1988 -0.6678 3.5794 10 6 6.5379 -0.3664 4.2588 11 6 6.2934 0.2061 5.6511 12 1 7.2539 0.4316 6.1145 13 8 5.5959 -0.7349 6.4660 14 6 5.4353 -0.3173 7.8249 15 6 4.6079 0.9717 7.8681 16 7 5.2075 1.9482 6.9444 17 6 5.4996 3.2228 7.3504 18 1 6.3692 3.7288 6.9577 19 6 4.6812 3.8627 8.2712 20 7 3.6519 3.2273 8.7901 21 14 5.0408 5.6255 8.7738 22 1 4.9876 6.5023 7.5766 23 1 4.0276 6.0748 9.7623 24 1 6.3931 5.7006 9.3828 25 6 5.4767 1.5047 5.5627 26 1 6.0356 2.2686 5.0222 27 6 4.1401 1.2201 4.8804 28 6 4.2387 1.1242 -1.3581 29 6 4.3392 2.3873 -0.4992 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.6887 1.8463 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 5.2074 0.2572 0.9920 36 1 3.6716 -0.6273 1.1566 37 1 5.3724 -0.9796 2.5495 38 1 4.6821 -1.4589 4.1228 39 1 7.0925 0.3573 3.6616 40 1 7.1171 -1.2861 4.3419 41 1 6.4146 -0.1356 8.2674 42 1 4.9218 -1.0977 8.3866 43 1 4.6127 1.3754 8.8806 44 1 3.5828 0.7616 7.5631 45 1 3.0798 3.6745 9.4332 46 1 3.6129 2.1591 4.7109 47 1 3.5366 0.5725 5.5165 48 1 5.1269 0.4972 -1.4374 49 1 3.6149 1.1710 -2.2507 50 1 3.7814 3.2644 -0.8271 51 1 5.2932 2.5914 -0.0130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177013244.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:50 Heat of formation + Delta-G solvation = -66.150174 kcal Electronic energy + Delta-G solvation = -31670.022790 eV Core-core repulsion = 27571.503523 eV Total energy + Delta-G solvation = -4098.519267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.24006 -39.10157 -37.93413 -36.63696 -35.59830 -34.60579 -31.83072 -31.49233 -30.04956 -29.06008 -28.02466 -27.14922 -25.52121 -24.58957 -23.80572 -22.71846 -22.48140 -21.42509 -20.13031 -18.81582 -18.13057 -17.04176 -16.76395 -16.43375 -16.02635 -15.80148 -15.40788 -15.26062 -15.15153 -14.99842 -14.51138 -14.32665 -14.15682 -13.67430 -13.52937 -13.38719 -13.11084 -12.68528 -12.53925 -12.32254 -12.22757 -12.03992 -11.83131 -11.72991 -11.55877 -11.30541 -11.14112 -10.96209 -10.86768 -10.77282 -10.54245 -10.41580 -10.23695 -10.12961 -10.10216 -10.07971 -9.71312 -9.60467 -9.13663 -8.90506 -8.56211 -8.16747 -6.62918 -5.86475 -3.40828 3.01669 3.24544 3.35286 3.40297 3.41582 3.55413 3.95925 4.36467 4.40964 4.58084 4.65786 4.81810 4.90412 5.00426 5.10231 5.19348 5.19580 5.30659 5.32646 5.38890 5.41876 5.48237 5.53201 5.55020 5.57421 5.68092 5.76337 5.80373 5.82738 5.83871 5.96172 6.02077 6.04634 6.06021 6.09901 6.14212 6.20260 6.35398 6.41742 6.48637 6.74497 6.80518 7.03199 7.12602 7.16376 7.58986 7.70915 7.85881 7.93901 8.38630 8.59625 9.11957 9.69099 10.31034 11.19301 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.003429 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.870336 B = 8164.634127 C = 8986.491431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.095 3.905 4 C -0.101 4.101 5 C -0.099 4.099 6 C 0.513 3.487 7 O -0.541 6.541 8 N -0.608 5.608 9 C 0.113 3.887 10 C -0.123 4.123 11 C 0.080 3.920 12 H 0.050 0.950 13 O -0.388 6.388 14 C 0.038 3.962 15 C 0.137 3.863 16 N -0.586 5.586 17 C -0.259 4.259 18 H 0.065 0.935 19 C 0.015 3.985 20 N -0.901 5.901 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.289 1.289 24 H -0.282 1.282 25 C 0.135 3.865 26 H 0.073 0.927 27 C 0.108 3.892 28 C -0.171 4.171 29 C -0.157 4.157 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.039 0.961 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.026 0.974 45 H 0.257 0.743 46 H 0.087 0.913 47 H 0.066 0.934 48 H 0.095 0.905 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -9.376 -16.234 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C 0.019 3.981 4 C -0.101 4.101 5 C -0.139 4.139 6 C 0.301 3.699 7 O -0.418 6.418 8 N -0.342 5.342 9 C -0.010 4.010 10 C -0.162 4.162 11 C 0.020 3.980 12 H 0.068 0.932 13 O -0.307 6.307 14 C -0.040 4.040 15 C 0.011 3.989 16 N -0.308 5.308 17 C -0.388 4.388 18 H 0.083 0.917 19 C -0.185 4.185 20 N -0.544 5.544 21 Si 0.735 3.265 22 H -0.207 1.207 23 H -0.215 1.215 24 H -0.209 1.209 25 C 0.026 3.974 26 H 0.091 0.909 27 C -0.015 4.015 28 C -0.208 4.208 29 C -0.194 4.194 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.057 0.943 42 H 0.097 0.903 43 H 0.120 0.880 44 H 0.044 0.956 45 H 0.067 0.933 46 H 0.105 0.895 47 H 0.085 0.915 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.113 0.887 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.831 -9.075 -16.097 18.497 hybrid contribution -0.012 1.353 0.551 1.461 sum 0.819 -7.722 -15.546 17.377 Atomic orbital electron populations 1.22696 0.81271 1.02448 0.99918 1.87809 1.19358 1.28286 1.95468 1.22099 0.90528 0.84418 1.01068 1.20876 0.92722 1.01922 0.94610 1.21151 1.01585 1.00065 0.91058 1.20510 0.79531 0.84749 0.85086 1.90643 1.39362 1.25190 1.86607 1.48293 1.51380 1.26760 1.07732 1.21634 0.91506 0.87268 1.00631 1.21800 0.97253 1.01784 0.95328 1.22307 0.94954 0.90351 0.90347 0.93210 1.87707 1.77921 1.43604 1.21501 1.23376 0.99795 0.98979 0.81857 1.21565 0.93148 0.86303 0.97852 1.44186 1.73570 1.09880 1.03207 1.19063 1.05858 0.90023 1.23865 0.91726 1.25334 0.95292 0.97821 1.00052 1.69880 1.17239 1.36088 1.31230 0.86336 0.77352 0.84831 0.78024 1.20679 1.21469 1.20857 1.21604 0.93747 0.94037 0.88010 0.90920 1.22110 0.99669 0.98161 0.81575 1.23115 1.02574 1.01189 0.93932 1.22959 1.01571 0.92139 1.02697 0.94439 0.89822 0.93982 0.90629 0.93837 0.89265 0.88032 0.90395 0.90670 0.90585 0.90521 0.94264 0.90282 0.87969 0.95553 0.93263 0.89457 0.91546 0.88631 0.88742 0.88659 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.10 10.26 -35.23 -0.36 -5.46 16 3 C 0.10 1.24 5.54 37.16 0.21 1.44 16 4 C -0.10 -1.22 1.38 -154.51 -0.21 -1.43 16 5 C -0.10 -1.21 3.85 -27.89 -0.11 -1.32 16 6 C 0.51 8.50 7.59 -10.99 -0.08 8.42 16 7 O -0.54 -10.92 13.71 5.56 0.08 -10.84 16 8 N -0.61 -10.12 2.96 -173.13 -0.51 -10.63 16 9 C 0.11 1.48 6.18 -3.70 -0.02 1.46 16 10 C -0.12 -1.64 5.82 -26.90 -0.16 -1.79 16 11 C 0.08 1.42 2.74 -26.64 -0.07 1.34 16 12 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 13 O -0.39 -7.28 9.59 -35.23 -0.34 -7.62 16 14 C 0.04 0.73 6.98 37.28 0.26 0.99 16 15 C 0.14 3.21 4.86 -3.55 -0.02 3.19 16 16 N -0.59 -14.42 2.71 -163.92 -0.44 -14.87 16 17 C -0.26 -7.00 9.66 -15.06 -0.15 -7.14 16 18 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 19 C 0.01 0.40 5.31 -17.43 -0.09 0.31 16 20 N -0.90 -25.51 10.73 55.49 0.60 -24.92 16 21 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.13 2.82 3.02 -67.12 -0.20 2.62 16 26 H 0.07 1.57 7.99 -51.93 -0.42 1.16 16 27 C 0.11 2.24 5.60 -4.02 -0.02 2.22 16 28 C -0.17 -1.63 9.91 -26.69 -0.26 -1.89 16 29 C -0.16 -1.73 9.97 -26.69 -0.27 -1.99 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.08 1.18 6.40 -51.93 -0.33 0.85 16 34 H 0.04 0.49 8.10 -51.93 -0.42 0.07 16 35 H 0.09 0.89 7.44 -51.93 -0.39 0.51 16 36 H 0.10 1.20 7.79 -51.93 -0.40 0.79 16 37 H 0.08 0.77 5.92 -51.93 -0.31 0.46 16 38 H 0.08 1.03 7.94 -51.93 -0.41 0.62 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.10 2.66 6.14 -51.93 -0.32 2.34 16 44 H 0.03 0.66 7.17 -51.93 -0.37 0.29 16 45 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.09 2.10 7.00 -51.93 -0.36 1.74 16 47 H 0.07 1.48 6.56 -51.93 -0.34 1.14 16 48 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 50 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 51 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 392.53 15.07 5.92 5.92 Total: -1.00 -31.20 392.53 -8.87 -40.08 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -8.69 Total: 3.96 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -0.09 Total: 7.87 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.36 Total: -50.42 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.62 Total: -23.92 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.20 -8.87 -40.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177013244.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.074 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds