Wall clock time and date at job start Tue Mar 31 2020 21:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00087 * 2 1 4 4 C 1.53002 * 109.47133 * 180.02562 * 3 2 1 5 5 C 1.52996 * 115.54967 * 304.12806 * 4 3 2 6 6 C 1.50700 * 109.46998 * 294.50334 * 5 4 3 7 7 O 1.21280 * 120.00103 * 4.28600 * 6 5 4 8 8 N 1.34777 * 119.99774 * 184.28831 * 6 5 4 9 9 C 1.46981 * 120.72430 * 0.02562 * 8 6 5 10 10 C 1.53156 * 108.43698 * 125.46864 * 9 8 6 11 11 C 1.52508 * 109.79615 * 54.53827 * 10 9 8 12 12 H 1.09001 * 108.93544 * 180.98713 * 11 10 9 13 13 O 1.42695 * 110.61628 * 61.28768 * 11 10 9 14 14 C 1.43069 * 113.88111 * 174.66398 * 13 11 10 15 15 C 1.53233 * 109.44479 * 61.64444 * 14 13 11 16 16 N 1.47179 * 108.69008 * 308.40473 * 15 14 13 17 17 C 1.36928 * 121.22451 * 230.96248 * 16 15 14 18 18 H 1.08005 * 119.99853 * 145.16453 * 17 16 15 19 19 C 1.38817 * 120.00479 * 325.43898 * 17 16 15 20 20 N 1.31625 * 119.99778 * 2.43512 * 19 17 16 21 21 Si 1.86799 * 120.00129 * 182.42950 * 19 17 16 22 22 H 1.48490 * 109.47097 * 60.00596 * 21 19 17 23 23 H 1.48506 * 109.46768 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47256 * 299.99993 * 21 19 17 25 25 C 1.47593 * 117.54777 * 51.23875 * 16 15 14 26 26 H 1.08998 * 110.31229 * 187.41880 * 25 16 15 27 27 C 1.46790 * 120.71776 * 180.02562 * 8 6 5 28 28 C 1.53001 * 117.49456 * 89.79506 * 4 3 2 29 29 C 1.52997 * 117.49685 * 158.45254 * 4 3 2 30 30 H 1.08998 * 109.47029 * 59.99893 * 1 2 3 31 31 H 1.08998 * 109.47380 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46600 * 300.00038 * 1 2 3 33 33 H 1.08995 * 109.47301 * 60.00200 * 3 2 1 34 34 H 1.09004 * 109.46793 * 300.00310 * 3 2 1 35 35 H 1.09004 * 109.46898 * 174.50419 * 5 4 3 36 36 H 1.09002 * 109.47328 * 54.50601 * 5 4 3 37 37 H 1.08999 * 109.64257 * 5.78278 * 9 8 6 38 38 H 1.08997 * 109.64295 * 245.15231 * 9 8 6 39 39 H 1.08997 * 109.41762 * 294.43552 * 10 9 8 40 40 H 1.09001 * 109.41589 * 174.63625 * 10 9 8 41 41 H 1.08996 * 109.47710 * 301.64878 * 14 13 11 42 42 H 1.08999 * 109.47606 * 181.63352 * 14 13 11 43 43 H 1.09004 * 109.59664 * 188.64597 * 15 14 13 44 44 H 1.08998 * 109.73889 * 68.25024 * 15 14 13 45 45 H 0.96994 * 120.00118 * 180.02562 * 20 19 17 46 46 H 1.09007 * 109.52517 * 354.17956 * 27 8 6 47 47 H 1.09004 * 109.52088 * 114.35909 * 27 8 6 48 48 H 1.09007 * 117.49662 * 215.00234 * 28 4 3 49 49 H 1.08996 * 117.50340 * 0.02728 * 28 4 3 50 50 H 1.09003 * 117.50336 * 359.97438 * 29 4 3 51 51 H 1.09004 * 117.49309 * 144.97388 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1326 0.3603 1.1416 6 6 3.8723 1.0562 2.4527 7 8 3.2023 2.0667 2.4803 8 7 4.3841 0.5555 3.5946 9 6 5.1988 -0.6678 3.5794 10 6 6.5379 -0.3664 4.2588 11 6 6.2934 0.2061 5.6511 12 1 7.2539 0.4316 6.1145 13 8 5.5959 -0.7349 6.4660 14 6 5.4353 -0.3173 7.8249 15 6 4.6079 0.9717 7.8681 16 7 5.2075 1.9482 6.9444 17 6 5.4996 3.2228 7.3504 18 1 6.3692 3.7288 6.9577 19 6 4.6812 3.8627 8.2712 20 7 3.6519 3.2273 8.7901 21 14 5.0408 5.6255 8.7738 22 1 4.9876 6.5023 7.5766 23 1 4.0276 6.0748 9.7623 24 1 6.3931 5.7006 9.3828 25 6 5.4767 1.5047 5.5627 26 1 6.0356 2.2686 5.0222 27 6 4.1401 1.2201 4.8804 28 6 4.2387 1.1242 -1.3581 29 6 4.3392 2.3873 -0.4992 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.6887 1.8463 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 5.2074 0.2572 0.9920 36 1 3.6716 -0.6273 1.1566 37 1 5.3724 -0.9796 2.5495 38 1 4.6821 -1.4589 4.1228 39 1 7.0925 0.3573 3.6616 40 1 7.1171 -1.2861 4.3419 41 1 6.4146 -0.1356 8.2674 42 1 4.9218 -1.0977 8.3866 43 1 4.6127 1.3754 8.8806 44 1 3.5828 0.7616 7.5631 45 1 3.0798 3.6745 9.4332 46 1 3.6129 2.1591 4.7109 47 1 3.5366 0.5725 5.5165 48 1 5.1269 0.4972 -1.4374 49 1 3.6149 1.1710 -2.2507 50 1 3.7814 3.2644 -0.8271 51 1 5.2932 2.5914 -0.0130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177013244.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:49 Heat of formation + Delta-G solvation = -86.339720 kcal Electronic energy + Delta-G solvation = -31670.898274 eV Core-core repulsion = 27571.503523 eV Total energy + Delta-G solvation = -4099.394751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.57885 -40.39737 -39.11657 -37.56850 -37.00319 -36.43077 -33.57650 -33.03575 -31.46364 -30.35288 -29.21512 -28.68537 -26.45604 -25.93427 -25.60630 -24.36465 -23.26290 -22.88225 -21.43446 -20.12038 -19.44760 -18.90342 -18.12734 -17.44020 -17.14731 -17.04730 -16.86529 -16.79179 -16.49848 -16.35208 -16.14183 -15.57912 -15.35744 -15.10282 -14.86264 -14.69441 -14.46637 -14.30088 -13.92328 -13.77914 -13.37488 -13.25065 -13.07921 -12.97591 -12.86811 -12.63736 -12.52286 -12.42218 -12.32960 -12.23836 -12.15159 -11.95310 -11.86641 -11.66606 -11.30658 -11.20811 -11.03023 -10.74026 -10.67311 -10.55316 -10.28529 -9.62392 -8.60008 -7.94313 -5.52357 1.40950 1.44576 1.50216 1.73530 2.00797 2.42944 2.62660 2.91564 3.08715 3.21776 3.48298 3.65550 3.71417 3.84434 3.93914 4.00015 4.06737 4.16663 4.19660 4.23566 4.30630 4.39516 4.44966 4.48821 4.53455 4.55873 4.61197 4.61876 4.65561 4.78444 4.81264 4.82598 4.85720 4.89674 4.93553 4.96255 5.00726 5.07195 5.10995 5.15225 5.26844 5.29202 5.32616 5.51727 5.59198 5.64524 6.19860 6.29709 6.39059 6.57505 7.05750 7.29454 7.68791 8.26973 9.08351 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.003429 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.870336 B = 8164.634127 C = 8986.491431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.098 3.902 4 C -0.128 4.128 5 C -0.086 4.086 6 C 0.505 3.495 7 O -0.587 6.587 8 N -0.609 5.609 9 C 0.109 3.891 10 C -0.115 4.115 11 C 0.084 3.916 12 H 0.047 0.953 13 O -0.383 6.383 14 C 0.051 3.949 15 C 0.145 3.855 16 N -0.605 5.605 17 C -0.272 4.272 18 H 0.064 0.936 19 C -0.037 4.037 20 N -0.929 5.929 21 Si 0.968 3.032 22 H -0.282 1.282 23 H -0.291 1.291 24 H -0.270 1.270 25 C 0.133 3.867 26 H 0.061 0.939 27 C 0.129 3.871 28 C -0.138 4.138 29 C -0.168 4.168 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.028 0.972 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.044 0.956 42 H 0.106 0.894 43 H 0.073 0.927 44 H -0.003 1.003 45 H 0.253 0.747 46 H 0.039 0.961 47 H 0.043 0.957 48 H 0.119 0.881 49 H 0.104 0.896 50 H 0.090 0.910 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.524 -11.567 -18.866 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C 0.021 3.979 4 C -0.128 4.128 5 C -0.125 4.125 6 C 0.296 3.704 7 O -0.467 6.467 8 N -0.342 5.342 9 C -0.012 4.012 10 C -0.153 4.153 11 C 0.024 3.976 12 H 0.065 0.935 13 O -0.303 6.303 14 C -0.027 4.027 15 C 0.019 3.981 16 N -0.328 5.328 17 C -0.402 4.402 18 H 0.082 0.918 19 C -0.234 4.234 20 N -0.574 5.574 21 Si 0.795 3.205 22 H -0.208 1.208 23 H -0.217 1.217 24 H -0.195 1.195 25 C 0.025 3.975 26 H 0.080 0.920 27 C 0.003 3.997 28 C -0.175 4.175 29 C -0.205 4.205 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.142 0.858 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.130 0.870 41 H 0.063 0.937 42 H 0.124 0.876 43 H 0.091 0.909 44 H 0.015 0.985 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.138 0.862 49 H 0.122 0.878 50 H 0.108 0.892 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.106 -11.311 -18.760 22.125 hybrid contribution -0.780 2.057 1.326 2.568 sum 2.326 -9.254 -17.434 19.874 Atomic orbital electron populations 1.22870 0.80145 1.03787 1.00084 1.87772 1.20701 1.28191 1.95476 1.21998 0.91738 0.84331 0.99811 1.20962 0.92075 1.03259 0.96537 1.21170 1.03817 0.99671 0.87850 1.21475 0.78304 0.84288 0.86351 1.90635 1.41217 1.27515 1.87325 1.48355 1.52030 1.27729 1.06088 1.21957 0.90559 0.85199 1.03478 1.21855 0.97883 1.03583 0.92020 1.22380 0.93492 0.88665 0.93029 0.93472 1.87725 1.78053 1.43393 1.21079 1.23185 0.99345 0.97334 0.82856 1.21347 0.92624 0.88120 0.95959 1.44412 1.73672 1.09631 1.05131 1.19366 1.05906 0.91211 1.23699 0.91796 1.26053 0.95399 1.01372 1.00527 1.70063 1.18223 1.37231 1.31868 0.85349 0.77516 0.80238 0.77370 1.20801 1.21664 1.19541 1.21729 0.94049 0.95731 0.85981 0.92042 1.21478 0.98686 0.95868 0.83643 1.23205 1.02517 0.99317 0.92415 1.23007 1.01282 0.92574 1.03670 0.92799 0.87912 0.95326 0.94462 0.92572 0.85768 0.86828 0.85778 0.91015 0.88873 0.87025 0.93745 0.87625 0.90881 0.98496 0.93811 0.94224 0.93859 0.86230 0.87759 0.89160 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.40 -10.06 10.26 -148.98 -1.53 -11.59 16 3 C 0.10 2.51 5.54 71.98 0.40 2.91 16 4 C -0.13 -2.84 1.38 -52.18 -0.07 -2.91 16 5 C -0.09 -1.86 3.85 29.85 0.11 -1.74 16 6 C 0.51 16.58 7.59 87.66 0.67 17.24 16 7 O -0.59 -24.89 13.71 -3.03 -0.04 -24.93 16 8 N -0.61 -19.92 2.96 -820.04 -2.43 -22.35 16 9 C 0.11 2.48 6.18 86.34 0.53 3.01 16 10 C -0.12 -2.60 5.82 30.48 0.18 -2.42 16 11 C 0.08 2.83 2.74 30.65 0.08 2.91 16 12 H 0.05 1.65 8.12 -2.39 -0.02 1.63 16 13 O -0.38 -13.78 9.59 -148.98 -1.43 -15.20 16 14 C 0.05 1.94 6.98 72.06 0.50 2.44 16 15 C 0.14 7.12 4.86 86.33 0.42 7.54 16 16 N -0.60 -31.05 2.71 -672.53 -1.82 -32.87 16 17 C -0.27 -15.27 9.66 84.04 0.81 -14.45 16 18 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 19 C -0.04 -2.10 5.31 84.86 0.45 -1.65 16 20 N -0.93 -55.24 10.73 21.65 0.23 -55.01 16 21 Si 0.97 45.63 29.55 68.60 2.03 47.65 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 C 0.13 5.69 3.02 44.92 0.14 5.83 16 26 H 0.06 2.73 7.99 -2.39 -0.02 2.71 16 27 C 0.13 5.59 5.60 86.24 0.48 6.08 16 28 C -0.14 -2.09 9.91 30.62 0.30 -1.79 16 29 C -0.17 -3.41 9.97 30.62 0.31 -3.11 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.04 1.23 6.40 -2.39 -0.02 1.22 16 34 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 35 H 0.12 1.83 7.44 -2.38 -0.02 1.81 16 36 H 0.11 2.24 7.79 -2.39 -0.02 2.23 16 37 H 0.12 1.74 5.92 -2.39 -0.01 1.72 16 38 H 0.07 1.73 7.94 -2.39 -0.02 1.72 16 39 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 43 H 0.07 4.00 6.14 -2.39 -0.01 3.99 16 44 H 0.00 -0.16 7.17 -2.39 -0.02 -0.18 16 45 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 46 H 0.04 2.07 7.00 -2.38 -0.02 2.05 16 47 H 0.04 2.05 6.56 -2.38 -0.02 2.04 16 48 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 49 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -74.24 392.53 2.48 -71.76 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.91 Total: 20.87 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 6.56 Total: 21.67 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -4.02 Total: -110.23 kcal Atomic # 8 Polarization: -48.73 SS G_CDS: -3.00 Total: -51.72 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -74.24 2.48 -71.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177013244.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.583 kcal (2) G-P(sol) polarization free energy of solvation -74.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds