Wall clock time and date at job start Tue Mar 31 2020 21:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99947 * 2 1 4 4 C 1.52998 * 109.47087 * 180.02562 * 3 2 1 5 5 C 1.53002 * 115.54723 * 293.76694 * 4 3 2 6 6 C 1.50696 * 109.47554 * 276.48657 * 5 4 3 7 7 O 1.21290 * 119.99526 * 5.30576 * 6 5 4 8 8 N 1.34772 * 120.00406 * 185.30279 * 6 5 4 9 9 C 1.46984 * 120.72263 * 0.02562 * 8 6 5 10 10 C 1.53161 * 108.43523 * 234.52890 * 9 8 6 11 11 C 1.52503 * 109.79515 * 305.45626 * 10 9 8 12 12 H 1.08993 * 108.93846 * 179.01481 * 11 10 9 13 13 O 1.42692 * 110.61852 * 298.71668 * 11 10 9 14 14 C 1.43062 * 113.88635 * 185.33210 * 13 11 10 15 15 C 1.53230 * 109.44875 * 298.36122 * 14 13 11 16 16 N 1.47171 * 108.69615 * 51.58359 * 15 14 13 17 17 C 1.36932 * 121.22574 * 129.04331 * 16 15 14 18 18 H 1.08008 * 119.99933 * 206.76937 * 17 16 15 19 19 C 1.38810 * 120.00241 * 26.77542 * 17 16 15 20 20 N 1.31616 * 120.00028 * 204.59057 * 19 17 16 21 21 Si 1.86803 * 119.99998 * 24.58458 * 19 17 16 22 22 H 1.48497 * 109.47187 * 276.63437 * 21 19 17 23 23 H 1.48500 * 109.46989 * 36.63218 * 21 19 17 24 24 H 1.48498 * 109.46933 * 156.63316 * 21 19 17 25 25 C 1.47598 * 117.54598 * 309.31758 * 16 15 14 26 26 H 1.09004 * 110.31011 * 172.03331 * 25 16 15 27 27 C 1.46797 * 120.72148 * 179.97438 * 8 6 5 28 28 C 1.53001 * 117.52361 * 79.46832 * 4 3 2 29 29 C 1.52999 * 60.00075 * 107.48274 * 28 4 3 30 30 H 1.09001 * 109.47427 * 300.00423 * 1 2 3 31 31 H 1.09001 * 109.47117 * 60.00389 * 1 2 3 32 32 H 1.08995 * 109.46922 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47903 * 59.99699 * 3 2 1 34 34 H 1.09001 * 109.46774 * 299.99153 * 3 2 1 35 35 H 1.09005 * 109.47196 * 156.48555 * 5 4 3 36 36 H 1.08998 * 109.46918 * 36.49030 * 5 4 3 37 37 H 1.08996 * 109.64712 * 114.84268 * 9 8 6 38 38 H 1.09007 * 109.81657 * 354.31314 * 9 8 6 39 39 H 1.09004 * 109.41170 * 185.35754 * 10 9 8 40 40 H 1.08999 * 109.41608 * 65.55656 * 10 9 8 41 41 H 1.08994 * 109.48142 * 178.36052 * 14 13 11 42 42 H 1.09007 * 109.47819 * 58.35002 * 14 13 11 43 43 H 1.09004 * 109.59826 * 291.81839 * 15 14 13 44 44 H 1.09004 * 109.73365 * 171.42725 * 15 14 13 45 45 H 0.96997 * 120.00132 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.51743 * 245.64660 * 27 8 6 47 47 H 1.08993 * 109.51771 * 5.76614 * 27 8 6 48 48 H 1.09002 * 117.50029 * 214.97271 * 28 4 3 49 49 H 1.09000 * 117.49336 * 359.97438 * 28 4 3 50 50 H 1.08994 * 117.50341 * 252.51356 * 29 28 4 51 51 H 1.09007 * 117.50011 * 107.48915 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1498 0.5777 1.2624 6 6 4.3072 1.6498 2.3096 7 8 3.8748 2.7646 2.1059 8 7 4.9284 1.3700 3.4725 9 6 5.4588 0.0247 3.7357 10 6 4.8689 -0.4786 5.0565 11 6 5.1465 0.5319 6.1644 12 1 4.7062 0.1687 7.0930 13 8 6.5512 0.6984 6.3524 14 6 6.8920 1.5412 7.4571 15 6 6.3296 2.9465 7.2191 16 7 4.8991 2.8332 6.8926 17 6 3.9590 3.5786 7.5526 18 1 2.9453 3.2159 7.6389 19 6 4.3088 4.8005 8.1107 20 7 3.6147 5.2869 9.1176 21 14 5.7647 5.7546 7.4326 22 1 7.0190 5.2406 8.0389 23 1 5.8228 5.5871 5.9582 24 1 5.6095 7.1943 7.7615 25 6 4.5144 1.8819 5.8317 26 1 3.4295 1.7880 5.7828 27 6 5.0909 2.4025 4.5032 28 6 4.2201 0.8818 -1.3350 29 6 4.3304 2.2775 -0.7179 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6886 1.8465 0.8899 34 1 1.6887 1.8462 -0.8901 35 1 5.1263 0.1557 1.0247 36 1 3.4971 -0.2083 1.6422 37 1 6.5452 0.0677 3.8124 38 1 5.1749 -0.6492 2.9273 39 1 5.3241 -1.4346 5.3156 40 1 3.7924 -0.6089 4.9463 41 1 7.9764 1.5950 7.5522 42 1 6.4668 1.1299 8.3727 43 1 6.8580 3.4162 6.3894 44 1 6.4526 3.5494 8.1189 45 1 3.8593 6.1406 9.5079 46 1 6.1499 2.6275 4.6294 47 1 4.5601 3.3052 4.2013 48 1 5.1082 0.2502 -1.3130 49 1 3.5839 0.7682 -2.2127 50 1 3.7669 3.0824 -1.1897 51 1 5.2911 2.5642 -0.2900 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177013245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:53 Heat of formation + Delta-G solvation = -81.805923 kcal Electronic energy + Delta-G solvation = -31675.451108 eV Core-core repulsion = 27576.252957 eV Total energy + Delta-G solvation = -4099.198151 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.67086 -40.52273 -39.19812 -37.58276 -37.04030 -36.58469 -33.86233 -33.24755 -31.70473 -30.49328 -29.37727 -28.77829 -26.47443 -25.97916 -25.56164 -24.71029 -23.28610 -23.00439 -21.53470 -20.23984 -19.47853 -19.01051 -18.15816 -17.53336 -17.40360 -17.15046 -16.98409 -16.88213 -16.70026 -16.26941 -16.04530 -15.87518 -15.59724 -15.26099 -14.85083 -14.67822 -14.50154 -14.42815 -14.13260 -13.94374 -13.78300 -13.33213 -13.31017 -13.15689 -12.91690 -12.85660 -12.52028 -12.43300 -12.32417 -12.28127 -12.07840 -11.97715 -11.87723 -11.58380 -11.35255 -11.25642 -11.10085 -11.03698 -10.68454 -10.49878 -10.39700 -9.71671 -8.94834 -8.27719 -5.57666 1.20095 1.35283 1.43121 1.68961 1.95574 2.32255 2.57574 2.76775 2.93649 3.09190 3.17011 3.63227 3.67233 3.79514 3.85066 3.95882 4.01856 4.03721 4.13301 4.17359 4.20124 4.25833 4.33849 4.38808 4.42144 4.49462 4.54961 4.59130 4.60246 4.63956 4.73041 4.77200 4.81461 4.82424 4.85369 4.85747 4.90905 4.95668 4.99297 5.07288 5.09777 5.14816 5.26485 5.27018 5.49090 5.72736 6.01956 6.18725 6.22560 6.52081 6.75287 7.25126 7.47281 7.88415 8.91898 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.003426 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.960796 B = 8171.112083 C = 8706.378353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.104 3.896 4 C -0.126 4.126 5 C -0.088 4.088 6 C 0.504 3.496 7 O -0.583 6.583 8 N -0.609 5.609 9 C 0.109 3.891 10 C -0.116 4.116 11 C 0.085 3.915 12 H 0.048 0.952 13 O -0.375 6.375 14 C 0.058 3.942 15 C 0.085 3.915 16 N -0.614 5.614 17 C -0.254 4.254 18 H 0.051 0.949 19 C -0.020 4.020 20 N -0.945 5.945 21 Si 0.932 3.068 22 H -0.253 1.253 23 H -0.283 1.283 24 H -0.306 1.306 25 C 0.134 3.866 26 H 0.063 0.937 27 C 0.118 3.882 28 C -0.138 4.138 29 C -0.161 4.161 30 H 0.035 0.965 31 H 0.049 0.951 32 H 0.104 0.896 33 H 0.032 0.968 34 H 0.056 0.944 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.122 0.878 42 H 0.050 0.950 43 H 0.030 0.970 44 H 0.067 0.933 45 H 0.264 0.736 46 H 0.057 0.943 47 H 0.046 0.954 48 H 0.116 0.884 49 H 0.105 0.895 50 H 0.090 0.910 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.002 -17.541 -19.102 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.027 3.973 4 C -0.127 4.127 5 C -0.128 4.128 6 C 0.294 3.706 7 O -0.463 6.463 8 N -0.342 5.342 9 C -0.012 4.012 10 C -0.154 4.154 11 C 0.026 3.974 12 H 0.066 0.934 13 O -0.293 6.293 14 C -0.020 4.020 15 C -0.040 4.040 16 N -0.338 5.338 17 C -0.383 4.383 18 H 0.069 0.931 19 C -0.216 4.216 20 N -0.590 5.590 21 Si 0.760 3.240 22 H -0.178 1.178 23 H -0.209 1.209 24 H -0.235 1.235 25 C 0.027 3.973 26 H 0.081 0.919 27 C -0.007 4.007 28 C -0.175 4.175 29 C -0.198 4.198 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.099 0.901 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.140 0.860 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.134 0.866 49 H 0.123 0.877 50 H 0.108 0.892 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.989 -17.081 -19.189 25.998 hybrid contribution -0.371 2.153 0.696 2.292 sum 3.618 -14.928 -18.493 24.040 Atomic orbital electron populations 1.22908 0.79963 1.03956 1.00278 1.87807 1.20792 1.27741 1.95456 1.21848 0.91358 0.84382 0.99696 1.20977 0.92181 1.05664 0.93835 1.21216 1.04266 0.96100 0.91185 1.21479 0.76342 0.89878 0.82869 1.90677 1.50423 1.25803 1.79434 1.48314 1.57347 1.12803 1.15775 1.21984 0.99462 0.81451 0.98329 1.21847 1.02622 0.98366 0.92599 1.22163 0.82124 0.94065 0.99073 0.93391 1.87759 1.22561 1.68136 1.50869 1.23009 1.01110 0.88888 0.88968 1.22155 0.84371 0.98417 0.99023 1.44681 1.02498 1.47024 1.39599 1.18746 0.92801 0.99079 1.27711 0.93076 1.25766 1.00567 0.97631 0.97662 1.69974 1.44543 1.21095 1.23399 0.86203 0.81293 0.77401 0.79116 1.17825 1.20872 1.23460 1.21802 0.97927 0.90844 0.86722 0.91899 1.21810 1.00007 0.91145 0.87744 1.23193 1.02452 0.97438 0.94419 1.22853 1.01007 0.92888 1.03093 0.94643 0.93195 0.87751 0.94986 0.92588 0.85856 0.86567 0.90069 0.85885 0.86753 0.89413 0.86011 0.93118 0.95203 0.91515 0.92650 0.92443 0.93545 0.86558 0.87684 0.89198 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -8.49 10.48 -148.98 -1.56 -10.05 16 3 C 0.10 2.38 5.74 71.98 0.41 2.79 16 4 C -0.13 -2.65 1.29 -52.18 -0.07 -2.72 16 5 C -0.09 -1.75 4.03 29.85 0.12 -1.63 16 6 C 0.50 15.13 7.54 87.66 0.66 15.79 16 7 O -0.58 -23.17 14.55 -3.06 -0.04 -23.21 16 8 N -0.61 -17.85 2.96 -817.80 -2.42 -20.27 16 9 C 0.11 2.12 6.13 86.34 0.53 2.65 16 10 C -0.12 -2.40 5.82 30.48 0.18 -2.22 16 11 C 0.09 2.64 2.71 30.34 0.08 2.72 16 12 H 0.05 1.59 8.12 -2.39 -0.02 1.57 16 13 O -0.37 -11.60 9.59 -148.98 -1.43 -13.03 16 14 C 0.06 1.90 6.97 72.06 0.50 2.40 16 15 C 0.08 3.58 3.88 86.33 0.33 3.91 16 16 N -0.61 -29.38 2.46 -672.12 -1.66 -31.03 16 17 C -0.25 -14.72 10.08 84.03 0.85 -13.87 16 18 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 19 C -0.02 -1.18 5.16 84.86 0.44 -0.75 16 20 N -0.95 -59.63 13.97 21.65 0.30 -59.33 16 21 Si 0.93 47.18 24.69 68.60 1.69 48.88 16 22 H -0.25 -11.47 6.20 99.48 0.62 -10.86 16 23 H -0.28 -14.65 7.11 99.48 0.71 -13.94 16 24 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 25 C 0.13 5.37 3.03 44.99 0.14 5.51 16 26 H 0.06 2.73 7.99 -2.39 -0.02 2.72 16 27 C 0.12 4.60 5.64 86.62 0.49 5.09 16 28 C -0.14 -2.12 9.90 30.59 0.30 -1.81 16 29 C -0.16 -3.41 8.93 30.59 0.27 -3.13 16 30 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.03 0.91 7.91 -2.39 -0.02 0.89 16 34 H 0.06 1.16 8.08 -2.39 -0.02 1.14 16 35 H 0.12 1.66 7.44 -2.38 -0.02 1.64 16 36 H 0.12 2.05 7.71 -2.39 -0.02 2.03 16 37 H 0.08 1.56 7.94 -2.39 -0.02 1.54 16 38 H 0.12 1.43 5.98 -2.38 -0.01 1.42 16 39 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.03 1.26 6.33 -2.39 -0.02 1.25 16 44 H 0.07 3.04 4.79 -2.39 -0.01 3.03 16 45 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 46 H 0.06 2.29 6.56 -2.39 -0.02 2.27 16 47 H 0.05 2.19 7.00 -2.39 -0.02 2.18 16 48 H 0.12 1.32 8.06 -2.39 -0.02 1.30 16 49 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -76.49 388.70 2.19 -74.30 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.82 Total: 17.35 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 6.49 Total: 16.39 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -3.78 Total: -110.63 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -3.03 Total: -46.29 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.69 Total: 48.88 kcal Total: -76.49 2.19 -74.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177013245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.503 kcal (2) G-P(sol) polarization free energy of solvation -76.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds