Wall clock time and date at job start Tue Mar 31 2020 21:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 114.00211 * 2 1 4 4 C 1.52996 * 109.47370 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47221 * 185.04329 * 4 3 2 6 6 C 1.50693 * 115.55007 * 294.17586 * 5 4 3 7 7 O 1.21283 * 120.00032 * 110.54108 * 6 5 4 8 8 N 1.34777 * 120.00448 * 290.54012 * 6 5 4 9 9 C 1.46982 * 120.71879 * 3.65090 * 8 6 5 10 10 C 1.53151 * 108.44985 * 125.43737 * 9 8 6 11 11 C 1.52687 * 110.65045 * 54.00319 * 10 9 8 12 12 H 1.09003 * 109.87063 * 181.38471 * 11 10 9 13 13 O 1.42696 * 109.79371 * 62.27388 * 11 10 9 14 14 C 1.43075 * 113.86320 * 175.29288 * 13 11 10 15 15 C 1.52815 * 109.52128 * 61.51838 * 14 13 11 16 16 N 1.47170 * 108.92009 * 308.65176 * 15 14 13 17 17 C 1.36939 * 121.22309 * 230.90938 * 16 15 14 18 18 H 1.07996 * 120.00311 * 152.79813 * 17 16 15 19 19 C 1.38815 * 119.99596 * 333.07212 * 17 16 15 20 20 N 1.31618 * 120.00267 * 344.41258 * 19 17 16 21 21 Si 1.86804 * 119.99649 * 164.40957 * 19 17 16 22 22 H 1.48502 * 109.47103 * 90.00327 * 21 19 17 23 23 H 1.48497 * 109.46949 * 209.99880 * 21 19 17 24 24 H 1.48497 * 109.47064 * 329.99851 * 21 19 17 25 25 C 1.47593 * 117.55329 * 50.63525 * 16 15 14 26 26 H 1.09000 * 110.31356 * 187.95438 * 25 16 15 27 27 C 1.46792 * 120.72189 * 183.61920 * 8 6 5 28 28 C 1.53001 * 117.49858 * 79.84946 * 5 4 3 29 29 C 1.53002 * 117.49769 * 148.51014 * 5 4 3 30 30 H 1.09006 * 109.46958 * 299.99988 * 1 2 3 31 31 H 1.09005 * 109.47350 * 59.99736 * 1 2 3 32 32 H 1.09001 * 109.47567 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47253 * 60.00228 * 3 2 1 34 34 H 1.08995 * 109.47148 * 300.00376 * 3 2 1 35 35 H 1.08999 * 109.47445 * 65.04116 * 4 3 2 36 36 H 1.08997 * 109.47115 * 305.04550 * 4 3 2 37 37 H 1.09003 * 109.63997 * 245.12438 * 9 8 6 38 38 H 1.08997 * 109.63960 * 5.74279 * 9 8 6 39 39 H 1.08997 * 109.41955 * 174.61844 * 10 9 8 40 40 H 1.09005 * 109.41515 * 294.47650 * 10 9 8 41 41 H 1.09011 * 109.46971 * 181.63622 * 14 13 11 42 42 H 1.08996 * 109.47788 * 301.64410 * 14 13 11 43 43 H 1.08993 * 109.52769 * 188.79231 * 15 14 13 44 44 H 1.08995 * 109.43850 * 68.45829 * 15 14 13 45 45 H 0.96997 * 119.99748 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.52256 * 114.42020 * 27 8 6 47 47 H 1.08991 * 109.57750 * 354.26192 * 27 8 6 48 48 H 1.08997 * 117.49753 * 215.00430 * 28 5 4 49 49 H 1.08995 * 117.50050 * 0.02562 * 28 5 4 50 50 H 1.08999 * 117.50030 * 359.97422 * 29 5 4 51 51 H 1.08996 * 117.50042 * 144.97737 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1573 2.5768 0.1262 6 6 3.9209 3.5028 -1.0389 7 8 3.1970 4.4674 -0.9098 8 7 4.5139 3.2594 -2.2245 9 6 5.3298 2.0529 -2.4222 10 6 4.7914 1.2980 -3.6411 11 6 4.7275 2.2171 -4.8587 12 1 4.3200 1.6744 -5.7116 13 8 6.0398 2.6650 -5.1954 14 6 6.0948 3.4489 -6.3911 15 6 5.2513 4.7107 -6.2137 16 7 3.9129 4.3269 -5.7371 17 6 2.7806 4.7820 -6.3584 18 1 1.8717 4.2000 -6.3185 19 6 2.8026 5.9886 -7.0443 20 7 3.7899 6.8374 -6.8515 21 14 1.4309 6.4077 -8.2412 22 1 0.3464 7.1218 -7.5208 23 1 1.9642 7.2771 -9.3205 24 1 0.8919 5.1573 -8.8338 25 6 3.8359 3.4285 -4.5686 26 1 2.8067 3.1097 -4.4035 27 6 4.3583 4.1929 -3.3466 28 6 4.2172 3.1993 1.5226 29 6 5.4972 2.6881 0.8564 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8630 0.7239 -0.9325 36 1 3.8513 0.5676 0.8404 37 1 6.3677 2.3370 -2.5963 38 1 5.2640 1.4174 -1.5391 39 1 5.4426 0.4518 -3.8600 40 1 3.7858 0.9355 -3.4277 41 1 7.1287 3.7272 -6.5958 42 1 5.7031 2.8671 -7.2254 43 1 5.1647 5.2283 -7.1690 44 1 5.7263 5.3647 -5.4825 45 1 3.8050 7.6806 -7.3306 46 1 5.3228 4.6422 -3.5830 47 1 3.6490 4.9748 -3.0754 48 1 4.0856 4.2786 1.5985 49 1 3.8140 2.6168 2.3509 50 1 5.9354 1.7696 1.2469 51 1 6.2078 3.4309 0.4940 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177024254.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:38 Heat of formation + Delta-G solvation = -65.759480 kcal Electronic energy + Delta-G solvation = -32063.201438 eV Core-core repulsion = 27964.699113 eV Total energy + Delta-G solvation = -4098.502325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.53990 -39.02718 -37.92868 -36.66544 -35.73326 -34.64032 -31.72452 -31.53291 -31.16041 -29.53201 -27.55547 -26.69017 -25.41258 -24.14453 -23.56594 -22.78549 -22.59819 -21.90604 -21.21992 -18.93416 -18.15280 -16.97918 -16.77068 -16.50030 -16.27471 -15.72145 -15.46479 -15.33204 -15.09097 -14.92886 -14.79439 -14.44316 -14.00393 -13.86421 -13.56111 -13.51314 -13.08416 -12.72392 -12.50452 -12.42589 -12.25757 -12.12801 -11.95084 -11.68508 -11.58378 -11.36105 -11.30638 -11.07283 -10.90502 -10.79089 -10.61171 -10.57611 -10.28842 -10.26884 -10.11769 -9.98422 -9.78675 -9.62881 -9.39165 -8.99636 -8.60278 -8.22804 -6.76005 -5.87088 -3.31784 2.79826 3.17407 3.33524 3.38516 3.40623 3.42733 3.77202 4.32968 4.40797 4.48251 4.60886 4.70109 4.76505 4.98436 5.04303 5.13279 5.16536 5.22279 5.29127 5.31539 5.34123 5.37691 5.45875 5.49962 5.50316 5.62660 5.64483 5.73117 5.76278 5.78219 5.84976 5.90137 5.99324 6.01880 6.06015 6.10283 6.19493 6.31387 6.36364 6.44306 6.67886 6.75358 6.96092 6.99472 7.08328 7.47679 7.69635 7.76969 7.88770 8.29657 8.47562 9.07968 9.69324 10.26902 11.20553 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.003717 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.179516 B = 7531.415433 C = 8179.920526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.063 3.937 4 C -0.077 4.077 5 C -0.155 4.155 6 C 0.545 3.455 7 O -0.540 6.540 8 N -0.599 5.599 9 C 0.110 3.890 10 C -0.124 4.124 11 C 0.083 3.917 12 H 0.054 0.946 13 O -0.388 6.388 14 C 0.039 3.961 15 C 0.138 3.862 16 N -0.585 5.585 17 C -0.255 4.255 18 H 0.068 0.932 19 C 0.007 3.993 20 N -0.901 5.901 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.135 3.865 26 H 0.072 0.928 27 C 0.106 3.894 28 C -0.146 4.146 29 C -0.155 4.155 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.040 0.960 43 H 0.096 0.904 44 H 0.028 0.972 45 H 0.256 0.744 46 H 0.068 0.932 47 H 0.088 0.912 48 H 0.103 0.897 49 H 0.102 0.898 50 H 0.104 0.896 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 -13.633 13.218 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.313 6.313 3 C -0.014 4.014 4 C -0.115 4.115 5 C -0.159 4.159 6 C 0.331 3.669 7 O -0.417 6.417 8 N -0.331 5.331 9 C -0.013 4.013 10 C -0.162 4.162 11 C 0.023 3.977 12 H 0.072 0.928 13 O -0.308 6.308 14 C -0.039 4.039 15 C 0.012 3.988 16 N -0.307 5.307 17 C -0.384 4.384 18 H 0.085 0.915 19 C -0.193 4.193 20 N -0.544 5.544 21 Si 0.735 3.265 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.204 1.204 25 C 0.026 3.974 26 H 0.090 0.910 27 C -0.017 4.017 28 C -0.183 4.183 29 C -0.192 4.192 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.114 0.886 44 H 0.046 0.954 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.107 0.893 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.123 0.877 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.949 -13.113 13.247 18.872 hybrid contribution -1.103 0.727 -0.950 1.627 sum 1.846 -12.386 12.298 17.551 Atomic orbital electron populations 1.22728 0.80911 1.02547 1.00235 1.87804 1.19838 1.28137 1.95530 1.22478 0.93507 0.84357 1.01056 1.21104 0.93402 0.92872 1.04111 1.21320 1.03739 0.97002 0.93807 1.19444 0.79691 0.84925 0.82804 1.90704 1.37472 1.30315 1.83184 1.48221 1.49296 1.23838 1.11758 1.21763 0.95322 0.86178 0.98047 1.21823 1.02001 0.98048 0.94358 1.22313 0.84854 0.94728 0.95795 0.92840 1.87738 1.27632 1.70973 1.44414 1.23255 1.00270 0.94233 0.86125 1.21373 0.84028 0.92088 1.01274 1.44270 1.02492 1.55382 1.28555 1.19150 0.90655 1.01021 1.27624 0.91452 1.25065 0.97964 0.94947 1.01276 1.70006 1.32979 1.08540 1.42898 0.86257 0.81515 0.78015 0.80752 1.21243 1.21458 1.20429 1.21580 0.97426 0.90934 0.87461 0.91005 1.22323 1.02350 0.92515 0.84505 1.23016 1.00200 1.01926 0.93157 1.23115 0.90166 1.03702 1.02222 0.94152 0.93851 0.89693 0.92933 0.92938 0.89705 0.90030 0.90766 0.89539 0.90340 0.90662 0.90149 0.94176 0.88626 0.95427 0.93442 0.91369 0.89318 0.87834 0.87990 0.87734 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -4.73 10.70 -35.23 -0.38 -5.10 16 3 C 0.06 0.75 5.75 37.16 0.21 0.96 16 4 C -0.08 -0.82 5.02 -26.73 -0.13 -0.95 16 5 C -0.16 -1.84 0.75 -155.66 -0.12 -1.96 16 6 C 0.54 9.02 6.45 -10.99 -0.07 8.95 16 7 O -0.54 -11.26 16.22 5.56 0.09 -11.17 16 8 N -0.60 -9.86 2.96 -172.79 -0.51 -10.37 16 9 C 0.11 1.44 5.67 -3.70 -0.02 1.41 16 10 C -0.12 -1.66 5.75 -26.81 -0.15 -1.82 16 11 C 0.08 1.45 2.82 -26.80 -0.08 1.38 16 12 H 0.05 0.98 8.11 -51.93 -0.42 0.56 16 13 O -0.39 -7.15 9.71 -35.23 -0.34 -7.49 16 14 C 0.04 0.74 6.96 37.06 0.26 1.00 16 15 C 0.14 3.20 4.92 -3.77 -0.02 3.18 16 16 N -0.58 -14.29 2.71 -164.13 -0.44 -14.74 16 17 C -0.26 -6.90 9.69 -15.06 -0.15 -7.04 16 18 H 0.07 1.80 7.87 -52.49 -0.41 1.39 16 19 C 0.01 0.18 4.98 -17.43 -0.09 0.09 16 20 N -0.90 -25.61 11.11 55.49 0.62 -24.99 16 21 Si 0.91 21.50 29.58 -169.99 -5.03 16.48 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.13 2.80 2.96 -67.08 -0.20 2.60 16 26 H 0.07 1.55 7.99 -51.93 -0.42 1.14 16 27 C 0.11 2.18 5.67 -3.72 -0.02 2.16 16 28 C -0.15 -1.52 9.79 -26.69 -0.26 -1.78 16 29 C -0.15 -1.46 9.63 -26.69 -0.26 -1.72 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.74 7.88 -51.93 -0.41 0.33 16 35 H 0.08 0.89 5.91 -51.93 -0.31 0.58 16 36 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 37 H 0.07 1.00 8.00 -51.93 -0.42 0.58 16 38 H 0.09 0.91 4.23 -51.93 -0.22 0.69 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 42 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 43 H 0.10 2.45 6.14 -51.93 -0.32 2.13 16 44 H 0.03 0.68 7.21 -51.93 -0.37 0.31 16 45 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.07 1.49 6.69 -51.93 -0.35 1.14 16 47 H 0.09 2.13 7.00 -51.93 -0.36 1.76 16 48 H 0.10 1.24 8.07 -51.93 -0.42 0.82 16 49 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 50 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 393.18 15.07 5.93 5.93 Total: -1.00 -31.53 393.18 -8.68 -40.21 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -8.63 Total: 3.35 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 0.02 Total: 7.90 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.34 Total: -50.10 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.63 Total: -23.76 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.53 -8.68 -40.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177024254.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.553 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds