Wall clock time and date at job start Tue Mar 31 2020 21:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 114.00211 * 2 1 4 4 C 1.52996 * 109.47370 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47221 * 185.04329 * 4 3 2 6 6 C 1.50693 * 115.55007 * 294.17586 * 5 4 3 7 7 O 1.21283 * 120.00032 * 110.54108 * 6 5 4 8 8 N 1.34777 * 120.00448 * 290.54012 * 6 5 4 9 9 C 1.46982 * 120.71879 * 3.65090 * 8 6 5 10 10 C 1.53151 * 108.44985 * 125.43737 * 9 8 6 11 11 C 1.52687 * 110.65045 * 54.00319 * 10 9 8 12 12 H 1.09003 * 109.87063 * 181.38471 * 11 10 9 13 13 O 1.42696 * 109.79371 * 62.27388 * 11 10 9 14 14 C 1.43075 * 113.86320 * 175.29288 * 13 11 10 15 15 C 1.52815 * 109.52128 * 61.51838 * 14 13 11 16 16 N 1.47170 * 108.92009 * 308.65176 * 15 14 13 17 17 C 1.36939 * 121.22309 * 230.90938 * 16 15 14 18 18 H 1.07996 * 120.00311 * 152.79813 * 17 16 15 19 19 C 1.38815 * 119.99596 * 333.07212 * 17 16 15 20 20 N 1.31618 * 120.00267 * 344.41258 * 19 17 16 21 21 Si 1.86804 * 119.99649 * 164.40957 * 19 17 16 22 22 H 1.48502 * 109.47103 * 90.00327 * 21 19 17 23 23 H 1.48497 * 109.46949 * 209.99880 * 21 19 17 24 24 H 1.48497 * 109.47064 * 329.99851 * 21 19 17 25 25 C 1.47593 * 117.55329 * 50.63525 * 16 15 14 26 26 H 1.09000 * 110.31356 * 187.95438 * 25 16 15 27 27 C 1.46792 * 120.72189 * 183.61920 * 8 6 5 28 28 C 1.53001 * 117.49858 * 79.84946 * 5 4 3 29 29 C 1.53002 * 117.49769 * 148.51014 * 5 4 3 30 30 H 1.09006 * 109.46958 * 299.99988 * 1 2 3 31 31 H 1.09005 * 109.47350 * 59.99736 * 1 2 3 32 32 H 1.09001 * 109.47567 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47253 * 60.00228 * 3 2 1 34 34 H 1.08995 * 109.47148 * 300.00376 * 3 2 1 35 35 H 1.08999 * 109.47445 * 65.04116 * 4 3 2 36 36 H 1.08997 * 109.47115 * 305.04550 * 4 3 2 37 37 H 1.09003 * 109.63997 * 245.12438 * 9 8 6 38 38 H 1.08997 * 109.63960 * 5.74279 * 9 8 6 39 39 H 1.08997 * 109.41955 * 174.61844 * 10 9 8 40 40 H 1.09005 * 109.41515 * 294.47650 * 10 9 8 41 41 H 1.09011 * 109.46971 * 181.63622 * 14 13 11 42 42 H 1.08996 * 109.47788 * 301.64410 * 14 13 11 43 43 H 1.08993 * 109.52769 * 188.79231 * 15 14 13 44 44 H 1.08995 * 109.43850 * 68.45829 * 15 14 13 45 45 H 0.96997 * 119.99748 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.52256 * 114.42020 * 27 8 6 47 47 H 1.08991 * 109.57750 * 354.26192 * 27 8 6 48 48 H 1.08997 * 117.49753 * 215.00430 * 28 5 4 49 49 H 1.08995 * 117.50050 * 0.02562 * 28 5 4 50 50 H 1.08999 * 117.50030 * 359.97422 * 29 5 4 51 51 H 1.08996 * 117.50042 * 144.97737 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1573 2.5768 0.1262 6 6 3.9209 3.5028 -1.0389 7 8 3.1970 4.4674 -0.9098 8 7 4.5139 3.2594 -2.2245 9 6 5.3298 2.0529 -2.4222 10 6 4.7914 1.2980 -3.6411 11 6 4.7275 2.2171 -4.8587 12 1 4.3200 1.6744 -5.7116 13 8 6.0398 2.6650 -5.1954 14 6 6.0948 3.4489 -6.3911 15 6 5.2513 4.7107 -6.2137 16 7 3.9129 4.3269 -5.7371 17 6 2.7806 4.7820 -6.3584 18 1 1.8717 4.2000 -6.3185 19 6 2.8026 5.9886 -7.0443 20 7 3.7899 6.8374 -6.8515 21 14 1.4309 6.4077 -8.2412 22 1 0.3464 7.1218 -7.5208 23 1 1.9642 7.2771 -9.3205 24 1 0.8919 5.1573 -8.8338 25 6 3.8359 3.4285 -4.5686 26 1 2.8067 3.1097 -4.4035 27 6 4.3583 4.1929 -3.3466 28 6 4.2172 3.1993 1.5226 29 6 5.4972 2.6881 0.8564 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8630 0.7239 -0.9325 36 1 3.8513 0.5676 0.8404 37 1 6.3677 2.3370 -2.5963 38 1 5.2640 1.4174 -1.5391 39 1 5.4426 0.4518 -3.8600 40 1 3.7858 0.9355 -3.4277 41 1 7.1287 3.7272 -6.5958 42 1 5.7031 2.8671 -7.2254 43 1 5.1647 5.2283 -7.1690 44 1 5.7263 5.3647 -5.4825 45 1 3.8050 7.6806 -7.3306 46 1 5.3228 4.6422 -3.5830 47 1 3.6490 4.9748 -3.0754 48 1 4.0856 4.2786 1.5985 49 1 3.8140 2.6168 2.3509 50 1 5.9354 1.7696 1.2469 51 1 6.2078 3.4309 0.4940 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177024254.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:37 Heat of formation + Delta-G solvation = -86.728294 kcal Electronic energy + Delta-G solvation = -32064.110714 eV Core-core repulsion = 27964.699113 eV Total energy + Delta-G solvation = -4099.411601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.82958 -40.45205 -38.90127 -37.70752 -37.17957 -36.46450 -33.51198 -33.05010 -32.06649 -31.08186 -29.36373 -27.53809 -26.79566 -25.69817 -24.90185 -24.26014 -23.50054 -23.03847 -22.66712 -20.42329 -19.49661 -18.89094 -17.90801 -17.47415 -17.38500 -17.10420 -16.96867 -16.80837 -16.46771 -16.21468 -15.99335 -15.81892 -15.52220 -15.12401 -14.94109 -14.84744 -14.48229 -14.21326 -13.86767 -13.81572 -13.56164 -13.32982 -13.09330 -13.03678 -12.84762 -12.64978 -12.50451 -12.41307 -12.40484 -12.24308 -12.17783 -12.10187 -11.89746 -11.68907 -11.50644 -11.23296 -11.03853 -10.80191 -10.71520 -10.63368 -10.53176 -9.72480 -8.73348 -7.95902 -5.44185 1.41291 1.42049 1.51684 1.52983 1.90883 2.42994 2.51094 2.88824 2.92465 3.19281 3.39199 3.45707 3.70034 3.83902 3.85815 3.94284 3.99431 4.09666 4.15330 4.17732 4.22386 4.30229 4.42391 4.46615 4.49121 4.53434 4.54269 4.57940 4.61729 4.75582 4.77318 4.79883 4.83681 4.85830 4.86699 4.94452 4.98233 5.00960 5.03785 5.10406 5.21753 5.23497 5.30410 5.45855 5.54506 5.57134 6.13963 6.23419 6.33450 6.46469 7.01355 7.14602 7.67823 8.22316 9.09064 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.003717 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.179516 B = 7531.415433 C = 8179.920526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.064 3.936 4 C -0.069 4.069 5 C -0.167 4.167 6 C 0.538 3.462 7 O -0.596 6.596 8 N -0.598 5.598 9 C 0.109 3.891 10 C -0.117 4.117 11 C 0.088 3.912 12 H 0.052 0.948 13 O -0.382 6.382 14 C 0.052 3.948 15 C 0.146 3.854 16 N -0.603 5.603 17 C -0.269 4.269 18 H 0.064 0.936 19 C -0.043 4.043 20 N -0.931 5.931 21 Si 0.969 3.031 22 H -0.289 1.289 23 H -0.287 1.287 24 H -0.268 1.268 25 C 0.133 3.867 26 H 0.055 0.945 27 C 0.125 3.875 28 C -0.148 4.148 29 C -0.128 4.128 30 H 0.049 0.951 31 H 0.034 0.966 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.045 0.955 43 H 0.067 0.933 44 H 0.000 1.000 45 H 0.252 0.748 46 H 0.051 0.949 47 H 0.039 0.961 48 H 0.078 0.922 49 H 0.130 0.870 50 H 0.145 0.855 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.323 -17.400 14.722 23.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C -0.013 4.013 4 C -0.106 4.106 5 C -0.170 4.170 6 C 0.328 3.672 7 O -0.477 6.477 8 N -0.329 5.329 9 C -0.012 4.012 10 C -0.155 4.155 11 C 0.029 3.971 12 H 0.070 0.930 13 O -0.300 6.300 14 C -0.026 4.026 15 C 0.020 3.980 16 N -0.326 5.326 17 C -0.399 4.399 18 H 0.081 0.919 19 C -0.239 4.239 20 N -0.576 5.576 21 Si 0.796 3.204 22 H -0.216 1.216 23 H -0.213 1.213 24 H -0.193 1.193 25 C 0.025 3.975 26 H 0.074 0.926 27 C 0.000 4.000 28 C -0.185 4.185 29 C -0.165 4.165 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.124 0.876 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.108 0.892 36 H 0.133 0.867 37 H 0.096 0.904 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.102 0.898 41 H 0.128 0.872 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.018 0.982 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.096 0.904 49 H 0.148 0.852 50 H 0.163 0.837 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.235 -16.942 14.767 22.871 hybrid contribution -1.562 1.945 -1.350 2.837 sum 2.673 -14.997 13.417 20.300 Atomic orbital electron populations 1.22915 0.79898 1.04001 1.00295 1.87779 1.21037 1.27804 1.95503 1.22442 0.94989 0.84304 0.99582 1.21104 0.91783 0.91949 1.05751 1.21211 1.06841 0.96804 0.92119 1.20405 0.78249 0.84867 0.83727 1.90673 1.39826 1.33062 1.84116 1.48261 1.49771 1.24213 1.10697 1.22070 0.94659 0.84899 0.99621 1.21872 1.03602 0.97926 0.92110 1.22338 0.83641 0.93333 0.97822 0.93046 1.87755 1.27816 1.70419 1.44057 1.23092 1.00911 0.92032 0.86589 1.21208 0.84146 0.93828 0.98807 1.44497 1.02339 1.55789 1.29984 1.19430 0.91455 1.01143 1.27826 0.91859 1.25802 1.00292 0.94875 1.02961 1.70161 1.34772 1.08771 1.43893 0.85265 0.78657 0.77902 0.78544 1.21584 1.21257 1.19260 1.21712 0.97649 0.91766 0.86379 0.92634 1.21706 0.99751 0.92338 0.86192 1.23113 1.01402 1.00990 0.93002 1.23295 0.88755 1.04873 0.99568 0.93227 0.94735 0.87568 0.92793 0.96233 0.89213 0.86738 0.90371 0.85784 0.86655 0.89784 0.87237 0.93623 0.91435 0.98180 0.93852 0.93119 0.94206 0.90350 0.85155 0.83668 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.68 16 2 O -0.40 -8.78 10.70 -148.98 -1.59 -10.37 16 3 C 0.06 1.44 5.75 71.98 0.41 1.85 16 4 C -0.07 -1.20 5.02 30.59 0.15 -1.05 16 5 C -0.17 -3.58 0.75 -52.93 -0.04 -3.62 16 6 C 0.54 18.13 6.45 87.65 0.57 18.69 16 7 O -0.60 -26.57 16.22 -3.04 -0.05 -26.62 16 8 N -0.60 -19.81 2.96 -818.96 -2.43 -22.23 16 9 C 0.11 2.52 5.67 86.34 0.49 3.01 16 10 C -0.12 -2.76 5.75 30.54 0.18 -2.59 16 11 C 0.09 2.99 2.82 30.55 0.09 3.07 16 12 H 0.05 1.80 8.11 -2.39 -0.02 1.78 16 13 O -0.38 -13.39 9.71 -148.98 -1.45 -14.84 16 14 C 0.05 1.92 6.96 71.92 0.50 2.42 16 15 C 0.15 7.04 4.92 86.19 0.42 7.46 16 16 N -0.60 -30.89 2.71 -673.19 -1.82 -32.71 16 17 C -0.27 -15.17 9.69 84.03 0.81 -14.36 16 18 H 0.06 3.53 7.87 -2.91 -0.02 3.51 16 19 C -0.04 -2.45 4.98 84.86 0.42 -2.03 16 20 N -0.93 -55.53 11.11 21.65 0.24 -55.29 16 21 Si 0.97 45.61 29.58 68.60 2.03 47.64 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 C 0.13 5.74 2.96 44.95 0.13 5.87 16 26 H 0.06 2.54 7.99 -2.39 -0.02 2.52 16 27 C 0.13 5.46 5.67 86.43 0.49 5.95 16 28 C -0.15 -2.75 9.79 30.62 0.30 -2.45 16 29 C -0.13 -1.91 9.63 30.62 0.29 -1.61 16 30 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.02 0.56 7.88 -2.39 -0.02 0.54 16 35 H 0.09 1.48 5.91 -2.39 -0.01 1.46 16 36 H 0.11 1.35 8.09 -2.39 -0.02 1.33 16 37 H 0.08 1.83 8.00 -2.39 -0.02 1.81 16 38 H 0.12 2.01 4.23 -2.39 -0.01 2.00 16 39 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.11 3.46 8.14 -2.38 -0.02 3.44 16 42 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 43 H 0.07 3.63 6.14 -2.39 -0.01 3.62 16 44 H 0.00 0.01 7.21 -2.39 -0.02 -0.01 16 45 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 46 H 0.05 2.36 6.69 -2.39 -0.02 2.34 16 47 H 0.04 2.09 7.00 -2.39 -0.02 2.08 16 48 H 0.08 1.87 8.07 -2.39 -0.02 1.85 16 49 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -75.50 393.18 2.31 -73.18 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.91 Total: 18.91 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: 6.47 Total: 22.32 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -4.01 Total: -110.23 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -3.09 Total: -51.83 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -75.50 2.31 -73.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177024254.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.548 kcal (2) G-P(sol) polarization free energy of solvation -75.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds