Wall clock time and date at job start Tue Mar 31 2020 21:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00136 * 2 1 4 4 C 1.52997 * 109.47009 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47145 * 175.70670 * 4 3 2 6 6 C 1.50700 * 115.54895 * 294.54151 * 5 4 3 7 7 O 1.21282 * 119.99706 * 100.88332 * 6 5 4 8 8 N 1.34774 * 120.00115 * 280.88322 * 6 5 4 9 9 C 1.46833 * 120.40982 * 355.00053 * 8 6 5 10 10 C 1.53365 * 109.28883 * 127.70784 * 9 8 6 11 11 C 1.52885 * 108.77416 * 53.81007 * 10 9 8 12 12 H 1.09002 * 108.96055 * 56.96884 * 11 10 9 13 13 O 1.42595 * 111.10064 * 177.50023 * 11 10 9 14 14 C 1.43150 * 113.63576 * 183.61569 * 13 11 10 15 15 C 1.53189 * 109.74442 * 298.31484 * 14 13 11 16 16 N 1.47351 * 108.79891 * 51.20851 * 15 14 13 17 17 C 1.36938 * 121.30856 * 129.75704 * 16 15 14 18 18 H 1.08001 * 120.00132 * 212.57428 * 17 16 15 19 19 C 1.38812 * 119.99810 * 32.57806 * 17 16 15 20 20 N 1.31622 * 120.00194 * 7.21140 * 19 17 16 21 21 Si 1.86799 * 120.00252 * 187.21214 * 19 17 16 22 22 H 1.48494 * 109.47148 * 89.99604 * 21 19 17 23 23 H 1.48496 * 109.47500 * 210.00312 * 21 19 17 24 24 H 1.48505 * 109.46893 * 330.00072 * 21 19 17 25 25 C 1.46870 * 117.38873 * 309.75965 * 16 15 14 26 26 H 1.09002 * 110.19942 * 292.03335 * 25 16 15 27 27 C 1.47129 * 120.40890 * 174.97092 * 8 6 5 28 28 C 1.52998 * 117.51862 * 80.23961 * 5 4 3 29 29 C 1.52993 * 117.49892 * 148.87039 * 5 4 3 30 30 H 1.09000 * 109.47227 * 59.99836 * 1 2 3 31 31 H 1.09001 * 109.47128 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47191 * 299.99912 * 1 2 3 33 33 H 1.09003 * 109.46956 * 60.00371 * 3 2 1 34 34 H 1.09001 * 109.47366 * 300.00484 * 3 2 1 35 35 H 1.09002 * 109.47225 * 55.71025 * 4 3 2 36 36 H 1.08998 * 109.47252 * 295.70729 * 4 3 2 37 37 H 1.09006 * 109.50156 * 247.65667 * 9 8 6 38 38 H 1.08994 * 109.50905 * 7.75041 * 9 8 6 39 39 H 1.09005 * 109.57661 * 173.64965 * 10 9 8 40 40 H 1.08997 * 109.58057 * 294.04252 * 10 9 8 41 41 H 1.08994 * 109.42335 * 58.40040 * 14 13 11 42 42 H 1.08999 * 109.42371 * 178.28793 * 14 13 11 43 43 H 1.09003 * 109.57968 * 171.00117 * 15 14 13 44 44 H 1.08993 * 109.58380 * 291.41009 * 15 14 13 45 45 H 0.96990 * 120.00481 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.73431 * 352.92102 * 27 8 6 47 47 H 1.08997 * 109.72670 * 113.59615 * 27 8 6 48 48 H 1.08996 * 117.50389 * 214.96994 * 28 5 4 49 49 H 1.09010 * 117.49821 * 359.97438 * 28 5 4 50 50 H 1.09004 * 117.49902 * 359.97438 * 29 5 4 51 51 H 1.08998 * 117.49789 * 144.97601 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1575 2.5783 -0.1086 6 6 3.8980 3.3074 -1.4017 7 8 3.0447 4.1679 -1.4519 8 7 4.6140 3.0034 -2.5023 9 6 5.7218 2.0426 -2.4263 10 6 5.5323 0.9649 -3.5009 11 6 5.3639 1.6479 -4.8583 12 1 6.2324 2.2788 -5.0475 13 8 5.2411 0.6870 -5.9047 14 6 5.1628 1.2677 -7.2108 15 6 3.9181 2.1552 -7.3088 16 7 3.9089 3.0878 -6.1680 17 6 3.7284 4.4330 -6.3499 18 1 4.2125 5.1370 -5.6893 19 6 2.9233 4.8917 -7.3834 20 7 2.2213 4.0387 -8.0991 21 14 2.8359 6.7195 -7.7587 22 1 3.8833 7.0718 -8.7506 23 1 1.4982 7.0476 -8.3136 24 1 3.0570 7.4923 -6.5100 25 6 4.1009 2.5180 -4.8280 26 1 3.2413 1.9071 -4.5520 27 6 4.2950 3.6296 -3.7948 28 6 4.2432 3.4151 1.1693 29 6 5.5104 2.8025 0.5696 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8516 0.5788 -0.8499 36 1 3.8628 0.7113 0.9251 37 1 6.6657 2.5615 -2.5936 38 1 5.7323 1.5763 -1.4411 39 1 6.4067 0.3145 -3.5241 40 1 4.6430 0.3765 -3.2754 41 1 6.0527 1.8698 -7.3938 42 1 5.1016 0.4753 -7.9568 43 1 3.9439 2.7190 -8.2413 44 1 3.0231 1.5338 -7.2799 45 1 1.6584 4.3592 -8.8210 46 1 3.3783 4.2125 -3.7051 47 1 5.1155 4.2781 -4.1020 48 1 4.1119 4.4930 1.0749 49 1 3.8559 2.9729 2.0874 50 1 5.9572 1.9573 1.0931 51 1 6.2130 3.4771 0.0804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177024256.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:46 Heat of formation + Delta-G solvation = -69.428423 kcal Electronic energy + Delta-G solvation = -31975.063425 eV Core-core repulsion = 27876.402003 eV Total energy + Delta-G solvation = -4098.661422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.60534 -38.95089 -37.89631 -36.78815 -36.01901 -34.66940 -31.70967 -31.39390 -31.16972 -29.87822 -27.24744 -26.64182 -25.56245 -23.99153 -23.82688 -22.73709 -22.47120 -21.78805 -20.76393 -19.66888 -18.43120 -16.94719 -16.75860 -16.51949 -16.21111 -15.81948 -15.38367 -15.29769 -15.12228 -14.93641 -14.78183 -14.31857 -14.04775 -13.85048 -13.58122 -13.34044 -13.05557 -12.87505 -12.71599 -12.53850 -12.37476 -12.13897 -11.85779 -11.74707 -11.60575 -11.33729 -11.29582 -11.01227 -10.96775 -10.81777 -10.70770 -10.59431 -10.24482 -10.21472 -10.20273 -10.06345 -9.73545 -9.60986 -9.45472 -8.96314 -8.56037 -8.34739 -6.66678 -5.85006 -3.37306 2.71628 3.05328 3.34191 3.34537 3.41531 3.43107 3.74928 4.24526 4.40870 4.42070 4.52248 4.64707 4.78700 4.92997 5.04829 5.13337 5.22283 5.27073 5.32248 5.34644 5.36753 5.38763 5.39411 5.43389 5.55615 5.57636 5.61926 5.70135 5.72139 5.75613 5.83163 5.86691 5.91391 5.93461 5.97834 6.12017 6.15907 6.27862 6.34076 6.48072 6.65199 6.71759 6.88784 7.05364 7.14069 7.52766 7.61213 7.71002 7.90469 8.34073 8.37212 9.10370 9.71073 10.31657 11.22675 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011025 B = 0.003835 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.038854 B = 7299.970901 C = 7655.357485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.394 6.394 3 C 0.062 3.938 4 C -0.071 4.071 5 C -0.154 4.154 6 C 0.548 3.452 7 O -0.533 6.533 8 N -0.604 5.604 9 C 0.110 3.890 10 C -0.125 4.125 11 C 0.077 3.923 12 H 0.051 0.949 13 O -0.389 6.389 14 C 0.038 3.962 15 C 0.144 3.856 16 N -0.587 5.587 17 C -0.260 4.260 18 H 0.069 0.931 19 C 0.012 3.988 20 N -0.902 5.902 21 Si 0.904 3.096 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.277 1.277 25 C 0.138 3.862 26 H 0.036 0.964 27 C 0.124 3.876 28 C -0.145 4.145 29 C -0.160 4.160 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.028 0.972 45 H 0.256 0.744 46 H 0.101 0.899 47 H 0.071 0.929 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.106 0.894 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.450 -7.363 16.345 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.313 6.313 3 C -0.014 4.014 4 C -0.109 4.109 5 C -0.157 4.157 6 C 0.335 3.665 7 O -0.410 6.410 8 N -0.337 5.337 9 C -0.013 4.013 10 C -0.164 4.164 11 C 0.018 3.982 12 H 0.069 0.931 13 O -0.308 6.308 14 C -0.039 4.039 15 C 0.019 3.981 16 N -0.312 5.312 17 C -0.389 4.389 18 H 0.087 0.913 19 C -0.188 4.188 20 N -0.545 5.545 21 Si 0.734 3.266 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.202 1.202 25 C 0.030 3.970 26 H 0.053 0.947 27 C 0.003 3.997 28 C -0.182 4.182 29 C -0.198 4.198 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.046 0.954 45 H 0.066 0.934 46 H 0.119 0.881 47 H 0.090 0.910 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.124 0.876 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.960 -7.186 16.178 18.679 hybrid contribution -0.385 1.361 -0.561 1.522 sum 5.575 -5.825 15.617 17.576 Atomic orbital electron populations 1.22730 0.80871 1.02592 1.00203 1.87808 1.19883 1.28079 1.95524 1.22471 0.93430 0.84459 1.01085 1.20933 0.93497 0.92620 1.03859 1.21319 1.03275 0.97829 0.93278 1.19446 0.80895 0.82381 0.83767 1.90714 1.33381 1.32274 1.84582 1.48213 1.32708 1.43600 1.09213 1.21769 0.89501 0.90140 0.99875 1.21892 1.03187 0.97877 0.93465 1.22433 0.98309 0.90450 0.87036 0.93117 1.87741 1.94744 1.33050 1.15285 1.23347 0.99981 0.97347 0.83262 1.21432 0.92534 0.90973 0.93186 1.43950 1.84984 1.03792 0.98448 1.19095 1.23373 0.81660 1.14786 0.91328 1.25235 0.95907 0.97719 0.99922 1.69951 1.29390 1.32978 1.22213 0.86261 0.77101 0.84943 0.78320 1.21304 1.21523 1.20193 1.21289 0.94938 0.93174 0.87564 0.94657 1.21773 1.03021 0.95255 0.79668 1.23025 1.00216 1.00048 0.94950 1.23172 0.90173 1.03687 1.02719 0.93783 0.89670 0.94205 0.93085 0.92686 0.89946 0.90092 0.91341 0.89013 0.90262 0.90807 0.94191 0.90126 0.88770 0.95395 0.93421 0.88091 0.91036 0.87959 0.87880 0.87608 0.88077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.17 10.70 -35.23 -0.38 -5.54 16 3 C 0.06 0.79 5.86 37.16 0.22 1.01 16 4 C -0.07 -0.78 5.22 -26.73 -0.14 -0.92 16 5 C -0.15 -1.76 0.74 -155.66 -0.11 -1.87 16 6 C 0.55 8.79 6.18 -10.99 -0.07 8.72 16 7 O -0.53 -10.76 16.41 5.56 0.09 -10.66 16 8 N -0.60 -9.55 2.98 -172.70 -0.51 -10.07 16 9 C 0.11 1.34 5.91 -3.67 -0.02 1.31 16 10 C -0.13 -1.74 5.83 -26.60 -0.16 -1.89 16 11 C 0.08 1.41 2.47 -26.58 -0.07 1.34 16 12 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 13 O -0.39 -7.70 10.49 -35.23 -0.37 -8.07 16 14 C 0.04 0.76 6.96 37.26 0.26 1.02 16 15 C 0.14 3.45 5.36 -3.48 -0.02 3.43 16 16 N -0.59 -14.62 3.03 -164.36 -0.50 -15.12 16 17 C -0.26 -6.95 8.77 -15.06 -0.13 -7.08 16 18 H 0.07 1.79 6.38 -52.49 -0.33 1.46 16 19 C 0.01 0.32 5.14 -17.43 -0.09 0.23 16 20 N -0.90 -25.86 11.07 55.49 0.61 -25.24 16 21 Si 0.90 21.62 29.56 -169.99 -5.02 16.59 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 25 C 0.14 2.96 3.03 -67.52 -0.20 2.75 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 27 C 0.12 2.45 4.53 -3.70 -0.02 2.44 16 28 C -0.15 -1.40 9.87 -26.73 -0.26 -1.66 16 29 C -0.16 -1.34 8.24 -26.74 -0.22 -1.56 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.84 7.59 -51.93 -0.39 0.45 16 35 H 0.08 0.94 7.58 -51.93 -0.39 0.55 16 36 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.88 4.65 -51.93 -0.24 0.64 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 43 H 0.09 2.45 6.36 -51.93 -0.33 2.11 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 46 H 0.10 2.32 6.85 -51.93 -0.36 1.97 16 47 H 0.07 1.41 7.34 -51.93 -0.38 1.03 16 48 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 50 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 394.10 15.07 5.94 5.94 Total: -1.00 -32.22 394.10 -8.81 -41.03 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -8.75 Total: 2.42 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 0.08 Total: 8.72 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.40 Total: -50.43 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.66 Total: -24.28 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.22 -8.81 -41.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177024256.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.393 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds