Wall clock time and date at job start Tue Mar 31 2020 21:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99911 * 2 1 4 4 C 1.53002 * 109.47016 * 180.02562 * 3 2 1 5 5 C 1.50694 * 112.85086 * 304.29255 * 4 3 2 6 6 O 1.21287 * 120.00148 * 112.88932 * 5 4 3 7 7 N 1.34776 * 120.00042 * 293.17078 * 5 4 3 8 8 C 1.46842 * 120.40785 * 3.95267 * 7 5 4 9 9 C 1.53371 * 109.24205 * 232.26280 * 8 7 5 10 10 C 1.52778 * 108.81590 * 306.15966 * 9 8 7 11 11 H 1.08997 * 109.34698 * 303.33275 * 10 9 8 12 12 O 1.42609 * 111.11766 * 182.54738 * 10 9 8 13 13 C 1.43140 * 113.62780 * 176.35890 * 12 10 9 14 14 C 1.53191 * 109.74050 * 61.68896 * 13 12 10 15 15 N 1.47355 * 108.80888 * 308.79692 * 14 13 12 16 16 C 1.36939 * 121.30553 * 230.23696 * 15 14 13 17 17 H 1.07999 * 119.99908 * 148.02931 * 16 15 14 18 18 C 1.38808 * 119.99733 * 328.02459 * 16 15 14 19 19 N 1.31621 * 119.99730 * 166.34855 * 18 16 15 20 20 Si 1.86798 * 120.00172 * 346.35319 * 18 16 15 21 21 H 1.48502 * 109.47074 * 86.45950 * 20 18 16 22 22 H 1.48498 * 109.47099 * 206.46066 * 20 18 16 23 23 H 1.48501 * 109.47156 * 326.46215 * 20 18 16 24 24 C 1.46879 * 117.38711 * 50.22864 * 15 14 13 25 25 H 1.09000 * 109.65865 * 67.66132 * 24 15 14 26 26 C 1.47132 * 120.40878 * 183.68484 * 7 5 4 27 27 C 1.53780 * 113.61309 * 75.48532 * 4 3 2 28 28 C 1.53959 * 87.01941 * 89.22885 * 27 4 3 29 29 C 1.53774 * 113.61477 * 173.09430 * 4 3 2 30 30 H 1.09000 * 109.47259 * 59.99992 * 1 2 3 31 31 H 1.08995 * 109.47109 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46762 * 299.99930 * 1 2 3 33 33 H 1.08996 * 109.47264 * 60.00381 * 3 2 1 34 34 H 1.08994 * 109.47025 * 299.99980 * 3 2 1 35 35 H 1.08994 * 109.50983 * 352.19781 * 8 7 5 36 36 H 1.09001 * 109.50432 * 112.28623 * 8 7 5 37 37 H 1.08998 * 109.57811 * 65.96551 * 9 8 7 38 38 H 1.09001 * 109.57669 * 186.36146 * 9 8 7 39 39 H 1.09000 * 109.42792 * 181.77121 * 13 12 10 40 40 H 1.09004 * 109.42996 * 301.66330 * 13 12 10 41 41 H 1.08997 * 109.58125 * 68.58769 * 14 13 12 42 42 H 1.08998 * 109.58607 * 188.86692 * 14 13 12 43 43 H 0.97005 * 119.99727 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.72660 * 246.42599 * 26 7 5 45 45 H 1.08995 * 109.72641 * 7.10142 * 26 7 5 46 46 H 1.08995 * 113.61793 * 203.74671 * 27 4 3 47 47 H 1.09007 * 113.61754 * 334.65431 * 27 4 3 48 48 H 1.08995 * 113.53890 * 270.80896 * 28 27 4 49 49 H 1.09004 * 113.74082 * 139.94205 * 28 27 4 50 50 H 1.09005 * 113.61847 * 25.35030 * 29 4 3 51 51 H 1.08996 * 113.61528 * 156.25485 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.0575 0.3583 1.1463 6 8 4.5866 -0.7117 0.9313 7 7 3.9315 0.8056 2.4114 8 6 3.2110 2.0544 2.6898 9 6 4.0985 2.9710 3.5410 10 6 4.5559 2.2024 4.7796 11 1 3.6829 1.8421 5.3238 12 8 5.3389 3.0297 5.6376 13 6 5.7273 2.3871 6.8563 14 6 6.5977 1.1661 6.5428 15 7 5.9039 0.3315 5.5461 16 6 5.7360 -1.0140 5.7377 17 1 4.8606 -1.5102 5.3455 18 6 6.6910 -1.7401 6.4360 19 7 6.4161 -2.9574 6.8543 20 14 8.3661 -0.9895 6.7822 21 1 8.3035 -0.1961 8.0360 22 1 9.3722 -2.0715 6.9308 23 1 8.7543 -0.1040 5.6550 24 6 5.3994 0.9993 4.3391 25 1 6.2375 1.3415 3.7319 26 6 4.5090 0.0456 3.5310 27 6 4.1211 0.7842 -1.3650 28 6 4.1889 2.2882 -1.6871 29 6 4.2599 2.5304 -0.1701 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 2.9686 2.5520 1.7508 36 1 2.2917 1.8313 3.2314 37 1 4.9680 3.2793 2.9606 38 1 3.5300 3.8497 3.8456 39 1 6.2930 3.0873 7.4710 40 1 4.8368 2.0672 7.3974 41 1 7.5562 1.4943 6.1407 42 1 6.7614 0.5905 7.4538 43 1 7.0837 -3.4649 7.3419 44 1 3.7103 -0.3415 4.1637 45 1 5.1069 -0.7802 3.1455 46 1 5.0990 0.3077 -1.2976 47 1 3.4230 0.2329 -1.9951 48 1 3.2810 2.6758 -2.1492 49 1 5.0936 2.5827 -2.2192 50 1 3.6738 3.3869 0.1632 51 1 5.2759 2.5321 0.2246 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177050209.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:46 Heat of formation + Delta-G solvation = -57.223895 kcal Electronic energy + Delta-G solvation = -32431.693962 eV Core-core repulsion = 28333.561768 eV Total energy + Delta-G solvation = -4098.132194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.04827 -39.37029 -37.91487 -37.16116 -36.08639 -34.90359 -31.89523 -31.61279 -30.47634 -29.18940 -27.47544 -26.44219 -25.84574 -25.41840 -24.04062 -23.99473 -22.17849 -21.61402 -20.17704 -19.65492 -18.51698 -17.40642 -16.95488 -16.31965 -16.25767 -15.78494 -15.63227 -15.58807 -15.43218 -15.11376 -14.61017 -14.32149 -14.12251 -14.00064 -13.78314 -13.40947 -13.12926 -12.96712 -12.63939 -12.57491 -12.48857 -12.24438 -12.02111 -11.91794 -11.89343 -11.50603 -11.40383 -11.35914 -11.10768 -10.87011 -10.67262 -10.61508 -10.47622 -10.37037 -10.25373 -9.87301 -9.77514 -9.57594 -9.30632 -9.23504 -8.57803 -8.32623 -6.95416 -5.97502 -3.43261 2.89431 3.14322 3.27139 3.43246 3.46060 3.49133 4.04358 4.20046 4.44267 4.48860 4.51893 4.61005 4.67936 4.74757 4.96485 4.98202 5.06650 5.09089 5.16984 5.18568 5.28279 5.29529 5.32249 5.42122 5.49580 5.50208 5.58966 5.60556 5.62345 5.67504 5.74450 5.81678 5.86159 5.89698 5.96707 5.96983 6.02116 6.14002 6.21588 6.24203 6.37663 6.52614 6.66290 6.69046 6.88243 6.93482 7.62167 7.68972 7.88491 8.29111 8.49458 8.83087 9.64778 10.02250 11.17730 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.003859 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.238721 B = 7253.118630 C = 7799.642540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.084 3.916 4 C -0.107 4.107 5 C 0.537 3.463 6 O -0.528 6.528 7 N -0.610 5.610 8 C 0.106 3.894 9 C -0.123 4.123 10 C 0.075 3.925 11 H 0.057 0.943 12 O -0.385 6.385 13 C 0.050 3.950 14 C 0.089 3.911 15 N -0.603 5.603 16 C -0.267 4.267 17 H 0.092 0.908 18 C 0.030 3.970 19 N -0.907 5.907 20 Si 0.890 3.110 21 H -0.286 1.286 22 H -0.302 1.302 23 H -0.271 1.271 24 C 0.141 3.859 25 H 0.041 0.959 26 C 0.127 3.873 27 C -0.106 4.106 28 C -0.143 4.143 29 C -0.120 4.120 30 H 0.040 0.960 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.033 0.967 42 H 0.083 0.917 43 H 0.264 0.736 44 H 0.074 0.926 45 H 0.104 0.896 46 H 0.093 0.907 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.077 0.923 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.587 15.607 -13.414 23.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C 0.007 3.993 4 C -0.111 4.111 5 C 0.324 3.676 6 O -0.403 6.403 7 N -0.344 5.344 8 C -0.017 4.017 9 C -0.162 4.162 10 C 0.015 3.985 11 H 0.075 0.925 12 O -0.304 6.304 13 C -0.028 4.028 14 C -0.037 4.037 15 N -0.329 5.329 16 C -0.395 4.395 17 H 0.109 0.891 18 C -0.169 4.169 19 N -0.550 5.550 20 Si 0.721 3.279 21 H -0.214 1.214 22 H -0.230 1.230 23 H -0.197 1.197 24 C 0.033 3.967 25 H 0.059 0.941 26 C 0.006 3.994 27 C -0.144 4.144 28 C -0.181 4.181 29 C -0.158 4.158 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.122 0.878 46 H 0.112 0.888 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.092 0.908 50 H 0.096 0.904 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.081 14.830 -13.484 22.436 hybrid contribution 0.710 0.311 0.653 1.014 sum -9.371 15.142 -12.831 21.948 Atomic orbital electron populations 1.22755 0.80901 1.03056 0.99753 1.88014 1.19599 1.26810 1.95301 1.22401 0.90353 0.85658 1.00911 1.22100 0.94748 0.98060 0.96179 1.20040 0.78731 0.85910 0.82916 1.90704 1.43872 1.21808 1.83936 1.48187 1.55309 1.24176 1.06717 1.21896 0.94799 0.84933 1.00109 1.21856 1.00333 0.98252 0.95743 1.22466 0.93771 0.91448 0.90789 0.92509 1.87760 1.71986 1.39624 1.31055 1.23048 0.98673 0.95388 0.85714 1.22093 0.94670 0.92376 0.94513 1.44308 1.67769 1.05179 1.15651 1.18861 1.04521 0.81292 1.34798 0.89084 1.25368 0.97590 0.95027 0.98952 1.69766 1.34815 1.11077 1.39296 0.86904 0.85433 0.77524 0.78052 1.21409 1.23034 1.19660 1.21436 0.94699 0.91767 0.88796 0.94125 1.21803 0.97176 0.94419 0.86011 1.22793 1.02221 0.96014 0.93348 1.22928 1.02412 0.96897 0.95815 1.22999 1.01229 0.94480 0.97067 0.94170 0.89439 0.94005 0.92167 0.92206 0.89167 0.91440 0.90737 0.90206 0.89630 0.93091 0.94871 0.89865 0.92595 0.90740 0.87756 0.88843 0.90576 0.90024 0.90762 0.90409 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.83 10.35 -35.23 -0.36 -5.19 16 3 C 0.08 0.84 4.81 37.16 0.18 1.02 16 4 C -0.11 -1.28 0.46 -154.85 -0.07 -1.35 16 5 C 0.54 9.02 6.34 -10.99 -0.07 8.95 16 6 O -0.53 -11.34 15.60 5.55 0.09 -11.25 16 7 N -0.61 -9.78 2.97 -172.40 -0.51 -10.30 16 8 C 0.11 1.25 5.06 -3.66 -0.02 1.23 16 9 C -0.12 -1.55 5.82 -26.65 -0.16 -1.71 16 10 C 0.07 1.27 2.47 -26.64 -0.07 1.21 16 11 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 12 O -0.39 -6.96 10.49 -35.23 -0.37 -7.33 16 13 C 0.05 0.90 6.95 37.26 0.26 1.16 16 14 C 0.09 1.94 4.36 -3.48 -0.02 1.93 16 15 N -0.60 -14.41 2.77 -164.07 -0.45 -14.87 16 16 C -0.27 -7.38 9.25 -15.06 -0.14 -7.51 16 17 H 0.09 2.67 6.58 -52.49 -0.35 2.33 16 18 C 0.03 0.88 5.34 -17.43 -0.09 0.79 16 19 N -0.91 -27.82 13.97 55.49 0.78 -27.04 16 20 Si 0.89 22.66 24.25 -169.99 -4.12 18.54 16 21 H -0.29 -6.88 6.46 56.52 0.37 -6.51 16 22 H -0.30 -7.86 7.11 56.52 0.40 -7.45 16 23 H -0.27 -6.94 6.60 56.52 0.37 -6.56 16 24 C 0.14 2.87 3.04 -67.27 -0.20 2.67 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 26 C 0.13 2.55 4.53 -3.45 -0.02 2.53 16 27 C -0.11 -1.21 6.90 -25.83 -0.18 -1.38 16 28 C -0.14 -1.15 7.74 -25.82 -0.20 -1.35 16 29 C -0.12 -1.09 6.00 -25.92 -0.16 -1.24 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.52 5.63 -51.93 -0.29 0.23 16 34 H 0.06 0.46 7.31 -51.93 -0.38 0.08 16 35 H 0.09 0.81 3.11 -51.93 -0.16 0.65 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.03 0.74 6.75 -51.93 -0.35 0.39 16 42 H 0.08 1.92 4.86 -51.93 -0.25 1.67 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.07 1.55 7.37 -51.93 -0.38 1.16 16 45 H 0.10 2.46 6.85 -51.93 -0.36 2.11 16 46 H 0.09 1.23 7.74 -51.93 -0.40 0.83 16 47 H 0.08 0.85 8.10 -51.92 -0.42 0.43 16 48 H 0.08 0.52 7.61 -51.93 -0.40 0.13 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.08 0.53 7.21 -51.93 -0.37 0.15 16 51 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -34.55 375.73 -7.51 -42.06 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -8.38 Total: 1.40 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 0.17 Total: 8.32 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.19 Total: -52.20 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.65 Total: -23.78 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.12 Total: 18.54 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.55 -7.51 -42.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177050209.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.163 kcal (2) G-P(sol) polarization free energy of solvation -34.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds