Wall clock time and date at job start Tue Mar 31 2020 21:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99911 * 2 1 4 4 C 1.53002 * 109.47016 * 180.02562 * 3 2 1 5 5 C 1.50694 * 112.85086 * 304.29255 * 4 3 2 6 6 O 1.21287 * 120.00148 * 112.88932 * 5 4 3 7 7 N 1.34776 * 120.00042 * 293.17078 * 5 4 3 8 8 C 1.46842 * 120.40785 * 3.95267 * 7 5 4 9 9 C 1.53371 * 109.24205 * 232.26280 * 8 7 5 10 10 C 1.52778 * 108.81590 * 306.15966 * 9 8 7 11 11 H 1.08997 * 109.34698 * 303.33275 * 10 9 8 12 12 O 1.42609 * 111.11766 * 182.54738 * 10 9 8 13 13 C 1.43140 * 113.62780 * 176.35890 * 12 10 9 14 14 C 1.53191 * 109.74050 * 61.68896 * 13 12 10 15 15 N 1.47355 * 108.80888 * 308.79692 * 14 13 12 16 16 C 1.36939 * 121.30553 * 230.23696 * 15 14 13 17 17 H 1.07999 * 119.99908 * 148.02931 * 16 15 14 18 18 C 1.38808 * 119.99733 * 328.02459 * 16 15 14 19 19 N 1.31621 * 119.99730 * 166.34855 * 18 16 15 20 20 Si 1.86798 * 120.00172 * 346.35319 * 18 16 15 21 21 H 1.48502 * 109.47074 * 86.45950 * 20 18 16 22 22 H 1.48498 * 109.47099 * 206.46066 * 20 18 16 23 23 H 1.48501 * 109.47156 * 326.46215 * 20 18 16 24 24 C 1.46879 * 117.38711 * 50.22864 * 15 14 13 25 25 H 1.09000 * 109.65865 * 67.66132 * 24 15 14 26 26 C 1.47132 * 120.40878 * 183.68484 * 7 5 4 27 27 C 1.53780 * 113.61309 * 75.48532 * 4 3 2 28 28 C 1.53959 * 87.01941 * 89.22885 * 27 4 3 29 29 C 1.53774 * 113.61477 * 173.09430 * 4 3 2 30 30 H 1.09000 * 109.47259 * 59.99992 * 1 2 3 31 31 H 1.08995 * 109.47109 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46762 * 299.99930 * 1 2 3 33 33 H 1.08996 * 109.47264 * 60.00381 * 3 2 1 34 34 H 1.08994 * 109.47025 * 299.99980 * 3 2 1 35 35 H 1.08994 * 109.50983 * 352.19781 * 8 7 5 36 36 H 1.09001 * 109.50432 * 112.28623 * 8 7 5 37 37 H 1.08998 * 109.57811 * 65.96551 * 9 8 7 38 38 H 1.09001 * 109.57669 * 186.36146 * 9 8 7 39 39 H 1.09000 * 109.42792 * 181.77121 * 13 12 10 40 40 H 1.09004 * 109.42996 * 301.66330 * 13 12 10 41 41 H 1.08997 * 109.58125 * 68.58769 * 14 13 12 42 42 H 1.08998 * 109.58607 * 188.86692 * 14 13 12 43 43 H 0.97005 * 119.99727 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.72660 * 246.42599 * 26 7 5 45 45 H 1.08995 * 109.72641 * 7.10142 * 26 7 5 46 46 H 1.08995 * 113.61793 * 203.74671 * 27 4 3 47 47 H 1.09007 * 113.61754 * 334.65431 * 27 4 3 48 48 H 1.08995 * 113.53890 * 270.80896 * 28 27 4 49 49 H 1.09004 * 113.74082 * 139.94205 * 28 27 4 50 50 H 1.09005 * 113.61847 * 25.35030 * 29 4 3 51 51 H 1.08996 * 113.61528 * 156.25485 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.0575 0.3583 1.1463 6 8 4.5866 -0.7117 0.9313 7 7 3.9315 0.8056 2.4114 8 6 3.2110 2.0544 2.6898 9 6 4.0985 2.9710 3.5410 10 6 4.5559 2.2024 4.7796 11 1 3.6829 1.8421 5.3238 12 8 5.3389 3.0297 5.6376 13 6 5.7273 2.3871 6.8563 14 6 6.5977 1.1661 6.5428 15 7 5.9039 0.3315 5.5461 16 6 5.7360 -1.0140 5.7377 17 1 4.8606 -1.5102 5.3455 18 6 6.6910 -1.7401 6.4360 19 7 6.4161 -2.9574 6.8543 20 14 8.3661 -0.9895 6.7822 21 1 8.3035 -0.1961 8.0360 22 1 9.3722 -2.0715 6.9308 23 1 8.7543 -0.1040 5.6550 24 6 5.3994 0.9993 4.3391 25 1 6.2375 1.3415 3.7319 26 6 4.5090 0.0456 3.5310 27 6 4.1211 0.7842 -1.3650 28 6 4.1889 2.2882 -1.6871 29 6 4.2599 2.5304 -0.1701 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 2.9686 2.5520 1.7508 36 1 2.2917 1.8313 3.2314 37 1 4.9680 3.2793 2.9606 38 1 3.5300 3.8497 3.8456 39 1 6.2930 3.0873 7.4710 40 1 4.8368 2.0672 7.3974 41 1 7.5562 1.4943 6.1407 42 1 6.7614 0.5905 7.4538 43 1 7.0837 -3.4649 7.3419 44 1 3.7103 -0.3415 4.1637 45 1 5.1069 -0.7802 3.1455 46 1 5.0990 0.3077 -1.2976 47 1 3.4230 0.2329 -1.9951 48 1 3.2810 2.6758 -2.1492 49 1 5.0936 2.5827 -2.2192 50 1 3.6738 3.3869 0.1632 51 1 5.2759 2.5321 0.2246 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177050209.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:45 Heat of formation + Delta-G solvation = -83.749143 kcal Electronic energy + Delta-G solvation = -32432.844183 eV Core-core repulsion = 28333.561768 eV Total energy + Delta-G solvation = -4099.282415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.16510 -40.74798 -39.08613 -38.02133 -37.46701 -36.69937 -33.78110 -33.20425 -31.85762 -30.12799 -29.09919 -27.45783 -26.79769 -26.47265 -25.62358 -25.06287 -23.66946 -22.99857 -21.67439 -20.92475 -19.54791 -18.84710 -18.45911 -17.55497 -17.47005 -17.11924 -17.02910 -16.68620 -16.55865 -16.42853 -15.99500 -15.65445 -15.62535 -15.30527 -15.21569 -14.79945 -14.51576 -14.21514 -14.12437 -13.79138 -13.69103 -13.38330 -13.34421 -13.14284 -13.05055 -12.79982 -12.74951 -12.49334 -12.25720 -12.23335 -12.10263 -12.02602 -11.98019 -11.59963 -11.41550 -11.35363 -11.24620 -11.07890 -10.75476 -10.54234 -10.39230 -9.73015 -8.94042 -8.22976 -5.65269 1.19932 1.34575 1.42613 1.61861 1.85941 2.33367 2.67121 2.70883 3.01371 3.12775 3.28868 3.60710 3.68449 3.77099 3.79244 3.89749 3.91313 3.97260 4.09616 4.17433 4.22434 4.25051 4.28271 4.37344 4.41979 4.50323 4.51291 4.55236 4.58735 4.63615 4.64737 4.79067 4.80334 4.82662 4.84370 4.87004 4.87959 4.98412 5.04053 5.04714 5.14434 5.17578 5.24858 5.40495 5.48595 5.77147 6.06818 6.18543 6.24032 6.42746 6.76221 7.17962 7.47363 7.89766 8.96329 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.003859 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.238721 B = 7253.118630 C = 7799.642540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.422 6.422 3 C 0.081 3.919 4 C -0.109 4.109 5 C 0.526 3.474 6 O -0.593 6.593 7 N -0.608 5.608 8 C 0.102 3.898 9 C -0.113 4.113 10 C 0.081 3.919 11 H 0.053 0.947 12 O -0.381 6.381 13 C 0.058 3.942 14 C 0.080 3.920 15 N -0.620 5.620 16 C -0.251 4.251 17 H 0.057 0.943 18 C -0.029 4.029 19 N -0.956 5.956 20 Si 0.951 3.049 21 H -0.257 1.257 22 H -0.310 1.310 23 H -0.275 1.275 24 C 0.138 3.862 25 H 0.026 0.974 26 C 0.142 3.858 27 C -0.121 4.121 28 C -0.121 4.121 29 C -0.113 4.113 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.130 0.870 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.054 0.946 41 H 0.032 0.968 42 H 0.070 0.930 43 H 0.263 0.737 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.059 0.941 47 H 0.072 0.928 48 H 0.113 0.887 49 H 0.082 0.918 50 H 0.118 0.882 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.170 21.049 -14.336 28.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.342 6.342 3 C 0.005 3.995 4 C -0.112 4.112 5 C 0.316 3.684 6 O -0.473 6.473 7 N -0.340 5.340 8 C -0.019 4.019 9 C -0.152 4.152 10 C 0.021 3.979 11 H 0.071 0.929 12 O -0.300 6.300 13 C -0.020 4.020 14 C -0.044 4.044 15 N -0.346 5.346 16 C -0.380 4.380 17 H 0.075 0.925 18 C -0.224 4.224 19 N -0.601 5.601 20 Si 0.780 3.220 21 H -0.183 1.183 22 H -0.239 1.239 23 H -0.200 1.200 24 C 0.031 3.969 25 H 0.044 0.956 26 C 0.018 3.982 27 C -0.159 4.159 28 C -0.158 4.158 29 C -0.151 4.151 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.147 0.853 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.131 0.869 49 H 0.101 0.899 50 H 0.136 0.864 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.698 20.369 -14.404 27.554 hybrid contribution 1.139 -1.469 0.871 2.052 sum -10.559 18.900 -13.534 25.532 Atomic orbital electron populations 1.22907 0.79131 1.03363 1.01474 1.87975 1.21747 1.28812 1.95675 1.22613 0.88216 0.85138 1.03512 1.22345 0.96688 0.98906 0.93283 1.21193 0.77503 0.85619 0.84082 1.90668 1.46743 1.24961 1.84919 1.48282 1.55077 1.25237 1.05442 1.22303 0.94542 0.82840 1.02265 1.21898 1.01077 0.98864 0.93328 1.22495 0.92388 0.90434 0.92536 0.92877 1.87780 1.71942 1.39244 1.31003 1.23026 0.98426 0.94377 0.86191 1.22208 0.95402 0.93569 0.93233 1.44471 1.68218 1.04254 1.17683 1.18743 1.03070 0.83356 1.32828 0.92520 1.26016 1.01038 0.95550 0.99806 1.69903 1.35922 1.12868 1.41444 0.85907 0.80599 0.76603 0.78891 1.18273 1.23915 1.20045 1.21597 0.94690 0.93085 0.87496 0.95616 1.21245 0.96070 0.93850 0.86996 1.22831 1.00457 0.98841 0.93763 1.22899 1.04368 0.93130 0.95363 1.23039 1.00536 0.93682 0.97820 0.91714 0.90088 0.92853 0.90269 0.88557 0.85280 0.89962 0.90317 0.86119 0.85820 0.92801 0.95018 0.91223 0.92773 0.92445 0.92972 0.92186 0.90899 0.86875 0.89930 0.86417 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.42 -10.22 10.35 -148.98 -1.54 -11.76 16 3 C 0.08 1.34 4.81 71.98 0.35 1.69 16 4 C -0.11 -2.41 0.46 -52.40 -0.02 -2.43 16 5 C 0.53 18.27 6.34 87.66 0.56 18.83 16 6 O -0.59 -27.88 15.60 -3.05 -0.05 -27.93 16 7 N -0.61 -19.67 2.97 -817.73 -2.43 -22.10 16 8 C 0.10 2.04 5.06 86.44 0.44 2.48 16 9 C -0.11 -2.37 5.82 30.65 0.18 -2.19 16 10 C 0.08 2.58 2.47 30.65 0.08 2.65 16 11 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 12 O -0.38 -12.45 10.49 -148.98 -1.56 -14.01 16 13 C 0.06 1.91 6.95 72.05 0.50 2.41 16 14 C 0.08 3.44 4.36 86.28 0.38 3.82 16 15 N -0.62 -30.40 2.77 -673.00 -1.87 -32.26 16 16 C -0.25 -14.67 9.25 84.03 0.78 -13.89 16 17 H 0.06 3.64 6.58 -2.91 -0.02 3.62 16 18 C -0.03 -1.74 5.34 84.86 0.45 -1.28 16 19 N -0.96 -61.72 13.97 21.65 0.30 -61.41 16 20 Si 0.95 48.23 24.25 68.60 1.66 49.90 16 21 H -0.26 -11.72 6.46 99.48 0.64 -11.07 16 22 H -0.31 -16.04 7.11 99.48 0.71 -15.33 16 23 H -0.28 -13.92 6.60 99.48 0.66 -13.26 16 24 C 0.14 5.76 3.04 45.21 0.14 5.89 16 25 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 26 C 0.14 6.09 4.53 86.42 0.39 6.48 16 27 C -0.12 -2.70 6.90 31.18 0.22 -2.48 16 28 C -0.12 -1.48 7.74 31.18 0.24 -1.24 16 29 C -0.11 -1.61 6.00 31.12 0.19 -1.43 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.08 0.97 5.63 -2.39 -0.01 0.95 16 34 H 0.10 0.92 7.31 -2.39 -0.02 0.90 16 35 H 0.13 1.63 3.11 -2.39 -0.01 1.62 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.03 1.37 6.75 -2.39 -0.02 1.36 16 42 H 0.07 3.15 4.86 -2.39 -0.01 3.14 16 43 H 0.26 16.14 8.31 -92.70 -0.77 15.37 16 44 H 0.06 2.60 7.37 -2.39 -0.02 2.58 16 45 H 0.05 2.75 6.85 -2.39 -0.02 2.73 16 46 H 0.06 1.71 7.74 -2.39 -0.02 1.69 16 47 H 0.07 1.62 8.10 -2.38 -0.02 1.60 16 48 H 0.11 0.76 7.61 -2.39 -0.02 0.74 16 49 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 50 H 0.12 0.78 7.21 -2.38 -0.02 0.76 16 51 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 Total: -1.00 -85.13 375.73 1.42 -83.71 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.81 Total: 14.90 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 6.10 Total: 20.97 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -4.00 Total: -115.78 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -3.15 Total: -53.70 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 1.66 Total: 49.90 kcal Total: -85.13 1.42 -83.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177050209.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.042 kcal (2) G-P(sol) polarization free energy of solvation -85.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds