Wall clock time and date at job start Tue Mar 31 2020 21:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99728 * 2 1 4 4 C 1.53001 * 109.47097 * 184.92574 * 3 2 1 5 5 C 1.50696 * 112.85288 * 303.88647 * 4 3 2 6 6 O 1.21277 * 119.99961 * 108.88791 * 5 4 3 7 7 N 1.34779 * 119.99759 * 288.89272 * 5 4 3 8 8 C 1.46983 * 120.72463 * 5.15470 * 7 5 4 9 9 C 1.53152 * 108.44954 * 234.52349 * 8 7 5 10 10 C 1.52505 * 109.79848 * 305.48470 * 9 8 7 11 11 H 1.09000 * 108.39739 * 179.31581 * 10 9 8 12 12 O 1.42697 * 110.63099 * 298.68426 * 10 9 8 13 13 C 1.43077 * 113.87080 * 185.36167 * 12 10 9 14 14 C 1.53223 * 109.44554 * 298.35127 * 13 12 10 15 15 N 1.47173 * 108.70247 * 51.58264 * 14 13 12 16 16 C 1.36935 * 121.22409 * 129.04614 * 15 14 13 17 17 H 1.08003 * 119.99815 * 209.52155 * 16 15 14 18 18 C 1.38814 * 120.00286 * 29.51455 * 16 15 14 19 19 N 1.31622 * 119.99900 * 10.55243 * 18 16 15 20 20 Si 1.86795 * 120.00237 * 190.55565 * 18 16 15 21 21 H 1.48498 * 109.47475 * 94.99203 * 20 18 16 22 22 H 1.48508 * 109.46909 * 214.99510 * 20 18 16 23 23 H 1.48504 * 109.47200 * 334.98958 * 20 18 16 24 24 C 1.47590 * 117.55362 * 309.06013 * 15 14 13 25 25 H 1.09001 * 110.31224 * 172.28319 * 24 15 14 26 26 C 1.46796 * 120.71876 * 185.13556 * 7 5 4 27 27 C 1.53780 * 113.68727 * 75.15674 * 4 3 2 28 28 C 1.53781 * 87.08411 * 89.12391 * 27 4 3 29 29 C 1.53780 * 87.07842 * 25.43226 * 28 27 4 30 30 H 1.08993 * 109.47074 * 64.93820 * 1 2 3 31 31 H 1.08999 * 109.46760 * 184.93873 * 1 2 3 32 32 H 1.09002 * 109.47426 * 304.93489 * 1 2 3 33 33 H 1.09008 * 109.47116 * 64.92807 * 3 2 1 34 34 H 1.09004 * 109.47429 * 304.93178 * 3 2 1 35 35 H 1.08998 * 109.63952 * 354.21629 * 8 7 5 36 36 H 1.09001 * 109.63609 * 114.62306 * 8 7 5 37 37 H 1.09000 * 109.41371 * 185.38797 * 9 8 7 38 38 H 1.08997 * 109.41667 * 65.58278 * 9 8 7 39 39 H 1.08999 * 109.47394 * 58.33870 * 13 12 10 40 40 H 1.08998 * 109.47122 * 178.35792 * 13 12 10 41 41 H 1.09003 * 109.60234 * 171.34727 * 14 13 12 42 42 H 1.09011 * 109.60058 * 291.81748 * 14 13 12 43 43 H 0.96999 * 120.00233 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.52508 * 5.80972 * 26 7 5 45 45 H 1.09007 * 109.52000 * 245.62196 * 26 7 5 46 46 H 1.09004 * 113.61348 * 203.67718 * 27 4 3 47 47 H 1.09007 * 113.61633 * 334.57471 * 27 4 3 48 48 H 1.08999 * 113.61439 * 270.87953 * 28 27 4 49 49 H 1.09003 * 113.61214 * 139.98037 * 28 27 4 50 50 H 1.09000 * 113.61389 * 220.01913 * 29 28 27 51 51 H 1.09001 * 113.69424 * 89.12961 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5306 1.1869 -0.1239 5 6 4.1406 0.3298 0.9551 6 8 4.5852 -0.7647 0.6812 7 7 4.1920 0.7798 2.2246 8 6 3.5585 2.0529 2.5963 9 6 4.6097 2.9380 3.2725 10 6 5.2423 2.1884 4.4403 11 1 5.9936 2.8330 4.8964 12 8 4.2577 1.8604 5.4197 13 6 4.7950 1.2621 6.6031 14 6 5.4835 -0.0577 6.2399 15 7 6.4279 0.1901 5.1387 16 6 7.7302 -0.2265 5.2132 17 1 8.5031 0.3220 4.6951 18 6 8.0572 -1.3535 5.9546 19 7 7.1054 -2.1389 6.4125 20 14 9.8478 -1.7556 6.3027 21 1 10.2296 -1.2072 7.6288 22 1 10.0330 -3.2291 6.3043 23 1 10.7045 -1.1502 5.2515 24 6 5.9199 0.9044 3.9513 25 1 6.7399 1.1440 3.2743 26 6 4.8814 0.0086 3.2661 27 6 4.0088 0.8271 -1.5404 28 6 4.0502 2.3378 -1.8252 29 6 4.2405 2.5380 -0.3124 30 1 -0.3633 0.4353 -0.9309 31 1 -0.3633 -1.0239 0.0885 32 1 -0.3634 0.5885 0.8425 33 1 1.7601 1.8146 0.9309 34 1 1.6204 1.8768 -0.8425 35 1 3.1818 2.5495 1.7021 36 1 2.7351 1.8650 3.2853 37 1 4.1350 3.8476 3.6404 38 1 5.3819 3.2003 2.5494 39 1 5.5209 1.9383 7.0547 40 1 3.9888 1.0688 7.3107 41 1 6.0240 -0.4387 7.1064 42 1 4.7358 -0.7852 5.9236 43 1 7.3338 -2.9267 6.9303 44 1 5.3810 -0.8484 2.8144 45 1 4.1565 -0.3378 4.0029 46 1 4.9894 0.3515 -1.5626 47 1 3.2643 0.2919 -2.1299 48 1 3.1090 2.7367 -2.2036 49 1 4.9109 2.6468 -2.4183 50 1 3.6830 3.3840 0.0896 51 1 5.2839 2.5306 0.0025 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177050211.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:52 Heat of formation + Delta-G solvation = -86.921456 kcal Electronic energy + Delta-G solvation = -32485.870647 eV Core-core repulsion = 28386.450670 eV Total energy + Delta-G solvation = -4099.419977 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.11175 -40.66880 -38.98863 -37.97265 -37.15787 -36.44836 -33.52845 -33.04125 -31.27770 -30.07018 -29.15005 -27.36492 -26.71912 -26.33885 -25.59645 -24.84099 -24.29182 -22.89030 -21.46152 -20.08144 -19.44060 -18.90297 -18.33833 -17.41475 -17.22876 -17.03192 -17.00593 -16.55017 -16.44321 -16.35482 -16.16227 -15.53633 -15.40347 -15.14700 -14.97089 -14.78252 -14.35165 -13.98406 -13.91535 -13.70529 -13.34746 -13.30651 -13.15299 -13.02719 -12.89532 -12.75256 -12.64994 -12.44900 -12.27865 -12.24343 -12.11005 -12.05843 -11.89130 -11.69942 -11.38820 -11.25860 -11.16962 -10.77481 -10.71578 -10.55971 -10.37178 -9.66896 -8.68751 -7.94067 -5.47085 1.41497 1.43166 1.52517 1.67588 1.99286 2.43861 2.70110 2.89670 3.21653 3.32509 3.44217 3.67411 3.69526 3.82401 3.86670 3.95412 3.99747 4.14904 4.18686 4.24817 4.35074 4.38489 4.44028 4.50650 4.53427 4.54717 4.60563 4.62392 4.64925 4.78290 4.81681 4.84737 4.85858 4.87107 4.90875 4.97366 5.05056 5.06275 5.15515 5.19319 5.23181 5.29886 5.46943 5.50696 5.58405 5.58607 6.24129 6.26186 6.35753 6.54386 7.03013 7.24681 7.68517 8.24231 9.10301 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.003649 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.569478 B = 7670.715148 C = 8102.244877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.423 6.423 3 C 0.084 3.916 4 C -0.109 4.109 5 C 0.524 3.476 6 O -0.600 6.600 7 N -0.602 5.602 8 C 0.106 3.894 9 C -0.115 4.115 10 C 0.085 3.915 11 H 0.053 0.947 12 O -0.383 6.383 13 C 0.053 3.947 14 C 0.146 3.854 15 N -0.603 5.603 16 C -0.268 4.268 17 H 0.067 0.933 18 C -0.045 4.045 19 N -0.934 5.934 20 Si 0.972 3.028 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.269 1.269 24 C 0.133 3.867 25 H 0.063 0.937 26 C 0.128 3.872 27 C -0.120 4.120 28 C -0.120 4.120 29 C -0.114 4.114 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.048 0.952 40 H 0.107 0.893 41 H 0.068 0.932 42 H -0.004 1.004 43 H 0.252 0.748 44 H 0.033 0.967 45 H 0.042 0.958 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.112 0.888 49 H 0.084 0.916 50 H 0.116 0.884 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.478 17.796 -12.866 25.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.343 6.343 3 C 0.007 3.993 4 C -0.112 4.112 5 C 0.314 3.686 6 O -0.480 6.480 7 N -0.334 5.334 8 C -0.015 4.015 9 C -0.154 4.154 10 C 0.026 3.974 11 H 0.071 0.929 12 O -0.302 6.302 13 C -0.025 4.025 14 C 0.020 3.980 15 N -0.326 5.326 16 C -0.397 4.397 17 H 0.085 0.915 18 C -0.241 4.241 19 N -0.579 5.579 20 Si 0.800 3.200 21 H -0.204 1.204 22 H -0.223 1.223 23 H -0.194 1.194 24 C 0.026 3.974 25 H 0.081 0.919 26 C 0.002 3.998 27 C -0.158 4.158 28 C -0.157 4.157 29 C -0.151 4.151 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.114 0.886 39 H 0.066 0.934 40 H 0.125 0.875 41 H 0.086 0.914 42 H 0.014 0.986 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.130 0.870 49 H 0.102 0.898 50 H 0.135 0.865 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.291 16.948 -12.912 25.112 hybrid contribution 1.315 -1.720 0.843 2.323 sum -11.976 15.228 -12.070 22.826 Atomic orbital electron populations 1.22907 0.79177 1.03297 1.01495 1.87980 1.21748 1.28872 1.95657 1.22544 0.88606 0.85073 1.03039 1.22325 0.96133 0.98711 0.94055 1.21179 0.77802 0.86224 0.83416 1.90641 1.50760 1.23993 1.82624 1.48261 1.54201 1.23401 1.07570 1.22129 0.95490 0.82442 1.01466 1.21894 0.99601 0.98676 0.95182 1.22273 0.90734 0.93976 0.90451 0.92943 1.87731 1.33876 1.80735 1.27874 1.23156 0.98364 0.94082 0.86927 1.21289 0.91069 0.93481 0.92117 1.44496 1.07754 1.67042 1.13346 1.19494 0.84340 1.06147 1.29760 0.91507 1.25936 1.01500 0.95140 1.01517 1.70143 1.32672 1.15049 1.40056 0.85181 0.79883 0.76590 0.78360 1.20448 1.22275 1.19418 1.21753 0.94054 0.92754 0.88873 0.91877 1.21643 0.94650 0.94750 0.88722 1.22797 1.00917 0.98935 0.93180 1.22866 1.04252 0.93084 0.95508 1.23077 1.00810 0.93465 0.97756 0.91810 0.90089 0.92770 0.90907 0.88479 0.86007 0.91270 0.86574 0.88555 0.93377 0.87522 0.91357 0.98603 0.93927 0.94815 0.93964 0.92151 0.91071 0.87016 0.89757 0.86546 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.42 -11.03 10.36 -148.98 -1.54 -12.57 16 3 C 0.08 1.54 4.87 71.98 0.35 1.90 16 4 C -0.11 -2.55 0.45 -52.40 -0.02 -2.57 16 5 C 0.52 19.08 6.31 87.66 0.55 19.63 16 6 O -0.60 -29.12 15.73 -3.02 -0.05 -29.17 16 7 N -0.60 -20.92 2.96 -818.93 -2.43 -23.35 16 8 C 0.11 2.48 5.01 86.34 0.43 2.91 16 9 C -0.12 -2.54 5.82 30.48 0.18 -2.36 16 10 C 0.08 2.84 2.72 30.49 0.08 2.92 16 11 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 12 O -0.38 -13.63 9.60 -148.98 -1.43 -15.06 16 13 C 0.05 1.99 6.98 72.06 0.50 2.50 16 14 C 0.15 7.21 4.88 86.33 0.42 7.63 16 15 N -0.60 -31.20 2.71 -672.36 -1.82 -33.02 16 16 C -0.27 -15.13 9.69 84.03 0.81 -14.32 16 17 H 0.07 3.70 7.85 -2.91 -0.02 3.67 16 18 C -0.05 -2.58 5.08 84.86 0.43 -2.15 16 19 N -0.93 -56.59 11.00 21.65 0.24 -56.35 16 20 Si 0.97 46.02 29.57 68.60 2.03 48.05 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 C 0.13 5.78 3.02 44.95 0.14 5.92 16 25 H 0.06 2.82 7.99 -2.39 -0.02 2.80 16 26 C 0.13 5.80 5.61 86.43 0.48 6.29 16 27 C -0.12 -2.76 6.89 31.12 0.21 -2.55 16 28 C -0.12 -1.52 7.73 31.12 0.24 -1.28 16 29 C -0.11 -1.68 5.81 31.12 0.18 -1.50 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 1.12 5.96 -2.38 -0.01 1.11 16 34 H 0.10 1.08 7.31 -2.38 -0.02 1.06 16 35 H 0.12 1.87 3.12 -2.39 -0.01 1.86 16 36 H 0.07 1.72 7.96 -2.39 -0.02 1.70 16 37 H 0.12 1.80 8.14 -2.39 -0.02 1.79 16 38 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 41 H 0.07 3.75 6.17 -2.39 -0.01 3.73 16 42 H 0.00 -0.23 7.17 -2.38 -0.02 -0.24 16 43 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 44 H 0.03 1.85 7.03 -2.39 -0.02 1.83 16 45 H 0.04 2.09 6.56 -2.38 -0.02 2.07 16 46 H 0.06 1.74 7.83 -2.38 -0.02 1.72 16 47 H 0.07 1.64 8.10 -2.38 -0.02 1.62 16 48 H 0.11 0.82 7.61 -2.39 -0.02 0.80 16 49 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.12 0.86 7.13 -2.39 -0.02 0.84 16 51 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 Total: -1.00 -81.68 382.58 2.17 -79.51 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.92 Total: 17.28 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 6.25 Total: 24.67 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -4.01 Total: -112.71 kcal Atomic # 8 Polarization: -53.79 SS G_CDS: -3.02 Total: -56.81 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -81.68 2.17 -79.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177050211.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.408 kcal (2) G-P(sol) polarization free energy of solvation -81.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds