Wall clock time and date at job start Tue Mar 31 2020 22:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99929 * 2 1 4 4 H 1.48495 * 109.47242 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46972 * 299.99920 * 3 2 1 6 6 H 1.48502 * 109.46995 * 59.99355 * 3 2 1 7 7 C 1.38812 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00165 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00059 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46926 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.46968 * 180.02562 * 12 11 10 14 14 C 1.46500 * 120.00132 * 269.99496 * 13 12 11 15 15 C 1.52992 * 109.47498 * 277.26777 * 14 13 12 16 16 C 1.54264 * 110.03259 * 302.71542 * 15 14 13 17 17 C 1.54886 * 104.19701 * 217.10526 * 16 15 14 18 18 C 1.54886 * 102.74903 * 37.94425 * 17 16 15 19 19 C 1.53883 * 110.03320 * 185.54983 * 15 14 13 20 20 C 1.34784 * 120.00125 * 90.00328 * 13 12 11 21 21 O 1.21277 * 119.99933 * 5.93257 * 20 13 12 22 22 C 1.50701 * 119.99942 * 185.93076 * 20 13 12 23 23 H 1.09000 * 110.48844 * 336.36808 * 22 20 13 24 24 C 1.54107 * 110.54728 * 99.22670 * 22 20 13 25 25 N 1.47056 * 103.85896 * 118.36355 * 24 22 20 26 26 C 1.33951 * 109.17955 * 0.38951 * 25 24 22 27 27 O 1.21585 * 123.04068 * 179.83506 * 26 25 24 28 28 N 1.33941 * 113.91705 * 359.57432 * 26 25 24 29 29 H 0.96999 * 120.00294 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99916 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46879 * 59.99725 * 10 9 7 32 32 H 1.08998 * 109.46263 * 299.99656 * 10 9 7 33 33 H 1.09008 * 109.47248 * 59.99756 * 11 10 9 34 34 H 1.09001 * 109.47581 * 299.99896 * 11 10 9 35 35 H 1.08999 * 109.47109 * 59.99875 * 12 11 10 36 36 H 1.09002 * 109.47245 * 299.99696 * 12 11 10 37 37 H 1.09004 * 109.46923 * 37.27082 * 14 13 12 38 38 H 1.09001 * 109.47353 * 157.26432 * 14 13 12 39 39 H 1.08998 * 110.02208 * 64.15605 * 15 14 13 40 40 H 1.09002 * 110.48959 * 335.78578 * 16 15 14 41 41 H 1.09004 * 110.48678 * 98.42781 * 16 15 14 42 42 H 1.09002 * 110.76183 * 279.62426 * 17 16 15 43 43 H 1.09008 * 110.75886 * 156.25972 * 17 16 15 44 44 H 1.09003 * 110.48722 * 203.38035 * 18 17 16 45 45 H 1.08996 * 110.48693 * 80.73658 * 18 17 16 46 46 H 1.08994 * 110.02837 * 238.56975 * 19 15 14 47 47 H 1.08993 * 110.02909 * 359.94907 * 19 15 14 48 48 H 1.09001 * 110.54741 * 237.18781 * 24 22 20 49 49 H 1.09002 * 110.54904 * 359.97438 * 24 22 20 50 50 H 0.97000 * 125.41023 * 180.23178 * 25 24 22 51 51 H 0.97001 * 125.41268 * 180.27023 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.0639 -4.8196 0.0021 12 6 1.8290 -6.1447 0.0026 13 7 0.8770 -7.2582 0.0024 14 6 0.4005 -7.8148 1.2710 15 6 1.4247 -8.8183 1.8044 16 6 1.6709 -9.9274 0.7608 17 6 1.8457 -11.2130 1.6069 18 6 0.8079 -11.0200 2.7403 19 6 0.8760 -9.5130 3.0631 20 6 0.4396 -7.7706 -1.1650 21 8 0.9135 -7.3842 -2.2123 22 6 -0.6383 -8.8238 -1.1687 23 1 -0.6613 -9.3496 -0.2142 24 6 -2.0103 -8.1925 -1.4754 25 7 -2.4277 -8.8466 -2.7246 26 6 -1.4849 -9.7212 -3.0998 27 8 -1.5755 -10.4046 -4.1013 28 7 -0.4310 -9.7706 -2.2747 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6841 -3.7141 0.8921 32 1 2.6854 -3.7148 -0.8879 33 1 0.4375 -4.7625 -0.8882 34 1 0.4369 -4.7614 0.8918 35 1 2.4556 -6.2021 0.8926 36 1 2.4556 -6.2028 -0.8874 37 1 0.2694 -7.0100 1.9944 38 1 -0.5528 -8.3187 1.1114 39 1 2.3600 -8.3091 2.0368 40 1 0.8129 -10.0224 0.0953 41 1 2.5763 -9.7202 0.1903 42 1 2.8552 -11.2736 2.0136 43 1 1.6124 -12.0989 1.0162 44 1 1.0834 -11.6101 3.6144 45 1 -0.1895 -11.2914 2.3945 46 1 1.5454 -9.3415 3.9060 47 1 -0.1196 -9.1345 3.2943 48 1 -2.7171 -8.4052 -0.6734 49 1 -1.9120 -7.1173 -1.6245 50 1 -3.2553 -8.6740 -3.2001 51 1 0.3458 -10.3404 -2.3886 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177402886.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:38 Heat of formation + Delta-G solvation = -45.241517 kcal Electronic energy + Delta-G solvation = -30555.471748 eV Core-core repulsion = 26490.151900 eV Total energy + Delta-G solvation = -4065.319848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.75646 -39.99998 -38.45134 -36.60533 -36.03448 -34.87464 -33.37227 -32.44404 -30.56690 -30.12293 -29.04528 -28.86498 -25.74761 -25.28515 -23.89690 -22.56688 -22.08452 -21.14444 -21.00831 -20.28897 -19.40174 -18.20806 -17.99672 -17.06354 -16.68462 -16.26563 -16.15103 -15.74821 -15.59109 -15.03870 -14.81843 -14.54097 -14.50538 -14.18781 -13.90714 -13.78621 -13.70934 -13.49862 -13.15974 -13.05936 -12.88428 -12.50231 -12.08348 -11.99804 -11.57274 -11.50101 -11.43403 -11.32576 -10.98026 -10.95411 -10.88140 -10.79700 -10.77023 -10.57234 -10.45954 -10.37264 -10.04770 -9.74912 -9.63381 -9.11686 -8.88513 -8.80839 -6.93014 -5.77373 -3.06013 2.09007 2.48195 2.70605 2.99351 3.42989 3.48668 3.50942 3.63288 3.87957 3.99200 4.17179 4.22683 4.27950 4.39405 4.58946 4.65079 4.87958 4.88383 4.99302 5.00334 5.07581 5.13744 5.20589 5.23960 5.28310 5.31565 5.39543 5.43686 5.53091 5.55299 5.55555 5.62674 5.71832 5.75899 5.87806 5.92753 5.97695 6.02057 6.24314 6.33872 6.40241 6.68022 6.81021 6.82210 6.84891 7.05942 7.14275 7.69936 7.89780 8.35747 8.41606 9.52753 10.10615 10.45078 11.45748 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010944 B = 0.002745 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.815669 B =10196.188538 C =12003.155454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.156 3.844 11 C -0.138 4.138 12 C 0.118 3.882 13 N -0.602 5.602 14 C 0.107 3.893 15 C -0.112 4.112 16 C -0.127 4.127 17 C -0.125 4.125 18 C -0.125 4.125 19 C -0.119 4.119 20 C 0.503 3.497 21 O -0.513 6.513 22 C 0.095 3.905 23 H 0.118 0.882 24 C 0.105 3.895 25 N -0.736 5.736 26 C 0.708 3.292 27 O -0.585 6.585 28 N -0.716 5.716 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.096 0.904 49 H 0.091 0.909 50 H 0.433 0.567 51 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.656 -25.978 7.665 27.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.028 3.972 11 C -0.177 4.177 12 C -0.004 4.004 13 N -0.335 5.335 14 C -0.017 4.017 15 C -0.131 4.131 16 C -0.164 4.164 17 C -0.163 4.163 18 C -0.163 4.163 19 C -0.157 4.157 20 C 0.287 3.713 21 O -0.387 6.387 22 C -0.015 4.015 23 H 0.135 0.865 24 C -0.021 4.021 25 N -0.399 5.399 26 C 0.407 3.593 27 O -0.462 6.462 28 N -0.379 5.379 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.114 0.886 49 H 0.109 0.891 50 H 0.276 0.724 51 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -2.294 -25.975 6.577 26.893 hybrid contribution 0.201 1.027 0.056 1.048 sum -2.093 -24.949 6.633 25.900 Atomic orbital electron populations 1.69668 1.05129 1.25529 1.57970 1.24748 0.95547 0.97730 1.03068 0.86109 0.78803 0.84060 0.77190 1.20527 1.21838 1.21862 1.19286 0.91089 0.84155 1.42434 0.91107 1.42348 1.05858 1.00019 1.89513 1.20532 0.93385 0.85437 0.97829 1.22054 0.99551 0.93736 1.02350 1.21525 0.91008 0.84485 1.03430 1.47978 1.45664 1.34489 1.05340 1.21908 0.96787 0.97207 0.85750 1.22234 0.99670 0.95975 0.95254 1.22591 1.01851 0.94447 0.97548 1.22498 0.99415 0.97506 0.96869 1.22367 0.99316 0.96069 0.98527 1.22154 1.01468 0.95011 0.97087 1.20619 0.83578 0.83018 0.84049 1.90789 1.56779 1.60008 1.31090 1.22175 0.94605 0.90972 0.93793 0.86462 1.22247 0.92699 0.99067 0.88123 1.45018 1.23471 1.43695 1.27731 1.15821 0.80592 0.80450 0.82425 1.91003 1.80274 1.48397 1.26575 1.44839 1.22753 1.43794 1.26477 0.93577 0.78348 0.96376 0.96242 0.91733 0.91830 0.90290 0.89629 0.89367 0.90077 0.90150 0.91647 0.91551 0.91463 0.91639 0.91693 0.91656 0.91393 0.91298 0.88627 0.89107 0.72444 0.72585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.75 5.60 -59.91 -0.34 -19.09 16 10 C 0.16 3.10 6.26 -4.04 -0.03 3.07 16 11 C -0.14 -2.12 5.65 -26.73 -0.15 -2.27 16 12 C 0.12 1.40 5.47 -4.04 -0.02 1.38 16 13 N -0.60 -5.69 2.22 -173.69 -0.39 -6.08 16 14 C 0.11 0.65 4.67 -4.05 -0.02 0.64 16 15 C -0.11 -0.64 3.21 -89.50 -0.29 -0.92 16 16 C -0.13 -0.77 5.54 -25.08 -0.14 -0.91 16 17 C -0.13 -0.66 6.91 -24.74 -0.17 -0.83 16 18 C -0.13 -0.57 6.83 -25.07 -0.17 -0.75 16 19 C -0.12 -0.55 6.46 -25.61 -0.17 -0.72 16 20 C 0.50 5.58 5.87 -10.98 -0.06 5.52 16 21 O -0.51 -8.26 16.34 5.56 0.09 -8.16 16 22 C 0.09 0.75 2.34 -68.20 -0.16 0.59 16 23 H 0.12 0.59 4.22 -51.93 -0.22 0.37 16 24 C 0.10 0.75 7.70 -3.16 -0.02 0.73 16 25 N -0.74 -6.80 6.37 -64.70 -0.41 -7.21 16 26 C 0.71 8.87 8.92 -88.40 -0.79 8.08 16 27 O -0.58 -9.77 18.05 5.29 0.10 -9.68 16 28 N -0.72 -7.09 5.78 -59.33 -0.34 -7.43 16 29 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.38 10.25 7.67 -40.82 -0.31 9.94 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.09 1.18 7.35 -51.93 -0.38 0.80 16 37 H 0.09 0.54 8.12 -51.93 -0.42 0.12 16 38 H 0.08 0.33 5.73 -51.93 -0.30 0.03 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.38 4.18 -51.93 -0.22 0.16 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.27 7.67 -51.93 -0.40 -0.13 16 48 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.09 0.75 7.72 -51.93 -0.40 0.35 16 50 H 0.43 3.25 8.96 -40.82 -0.37 2.88 16 51 H 0.43 3.86 8.96 -40.82 -0.37 3.50 16 LS Contribution 402.13 15.07 6.06 6.06 Total: -1.00 -37.45 402.13 -10.38 -47.84 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -8.42 Total: 7.74 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -2.43 Total: 6.17 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -0.75 Total: -67.46 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.19 Total: -17.84 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.45 -10.38 -47.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177402886.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.594 kcal (2) G-P(sol) polarization free energy of solvation -37.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds