Wall clock time and date at job start Tue Mar 31 2020 22:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99929 * 2 1 4 4 H 1.48495 * 109.47242 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46972 * 299.99920 * 3 2 1 6 6 H 1.48502 * 109.46995 * 59.99355 * 3 2 1 7 7 C 1.38812 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00165 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00059 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46926 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.46968 * 180.02562 * 12 11 10 14 14 C 1.46500 * 120.00132 * 269.99496 * 13 12 11 15 15 C 1.52992 * 109.47498 * 277.26777 * 14 13 12 16 16 C 1.54264 * 110.03259 * 302.71542 * 15 14 13 17 17 C 1.54886 * 104.19701 * 217.10526 * 16 15 14 18 18 C 1.54886 * 102.74903 * 37.94425 * 17 16 15 19 19 C 1.53883 * 110.03320 * 185.54983 * 15 14 13 20 20 C 1.34784 * 120.00125 * 90.00328 * 13 12 11 21 21 O 1.21277 * 119.99933 * 5.93257 * 20 13 12 22 22 C 1.50701 * 119.99942 * 185.93076 * 20 13 12 23 23 H 1.09000 * 110.48844 * 336.36808 * 22 20 13 24 24 C 1.54107 * 110.54728 * 99.22670 * 22 20 13 25 25 N 1.47056 * 103.85896 * 118.36355 * 24 22 20 26 26 C 1.33951 * 109.17955 * 0.38951 * 25 24 22 27 27 O 1.21585 * 123.04068 * 179.83506 * 26 25 24 28 28 N 1.33941 * 113.91705 * 359.57432 * 26 25 24 29 29 H 0.96999 * 120.00294 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99916 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46879 * 59.99725 * 10 9 7 32 32 H 1.08998 * 109.46263 * 299.99656 * 10 9 7 33 33 H 1.09008 * 109.47248 * 59.99756 * 11 10 9 34 34 H 1.09001 * 109.47581 * 299.99896 * 11 10 9 35 35 H 1.08999 * 109.47109 * 59.99875 * 12 11 10 36 36 H 1.09002 * 109.47245 * 299.99696 * 12 11 10 37 37 H 1.09004 * 109.46923 * 37.27082 * 14 13 12 38 38 H 1.09001 * 109.47353 * 157.26432 * 14 13 12 39 39 H 1.08998 * 110.02208 * 64.15605 * 15 14 13 40 40 H 1.09002 * 110.48959 * 335.78578 * 16 15 14 41 41 H 1.09004 * 110.48678 * 98.42781 * 16 15 14 42 42 H 1.09002 * 110.76183 * 279.62426 * 17 16 15 43 43 H 1.09008 * 110.75886 * 156.25972 * 17 16 15 44 44 H 1.09003 * 110.48722 * 203.38035 * 18 17 16 45 45 H 1.08996 * 110.48693 * 80.73658 * 18 17 16 46 46 H 1.08994 * 110.02837 * 238.56975 * 19 15 14 47 47 H 1.08993 * 110.02909 * 359.94907 * 19 15 14 48 48 H 1.09001 * 110.54741 * 237.18781 * 24 22 20 49 49 H 1.09002 * 110.54904 * 359.97438 * 24 22 20 50 50 H 0.97000 * 125.41023 * 180.23178 * 25 24 22 51 51 H 0.97001 * 125.41268 * 180.27023 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.0639 -4.8196 0.0021 12 6 1.8290 -6.1447 0.0026 13 7 0.8770 -7.2582 0.0024 14 6 0.4005 -7.8148 1.2710 15 6 1.4247 -8.8183 1.8044 16 6 1.6709 -9.9274 0.7608 17 6 1.8457 -11.2130 1.6069 18 6 0.8079 -11.0200 2.7403 19 6 0.8760 -9.5130 3.0631 20 6 0.4396 -7.7706 -1.1650 21 8 0.9135 -7.3842 -2.2123 22 6 -0.6383 -8.8238 -1.1687 23 1 -0.6613 -9.3496 -0.2142 24 6 -2.0103 -8.1925 -1.4754 25 7 -2.4277 -8.8466 -2.7246 26 6 -1.4849 -9.7212 -3.0998 27 8 -1.5755 -10.4046 -4.1013 28 7 -0.4310 -9.7706 -2.2747 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6841 -3.7141 0.8921 32 1 2.6854 -3.7148 -0.8879 33 1 0.4375 -4.7625 -0.8882 34 1 0.4369 -4.7614 0.8918 35 1 2.4556 -6.2021 0.8926 36 1 2.4556 -6.2028 -0.8874 37 1 0.2694 -7.0100 1.9944 38 1 -0.5528 -8.3187 1.1114 39 1 2.3600 -8.3091 2.0368 40 1 0.8129 -10.0224 0.0953 41 1 2.5763 -9.7202 0.1903 42 1 2.8552 -11.2736 2.0136 43 1 1.6124 -12.0989 1.0162 44 1 1.0834 -11.6101 3.6144 45 1 -0.1895 -11.2914 2.3945 46 1 1.5454 -9.3415 3.9060 47 1 -0.1196 -9.1345 3.2943 48 1 -2.7171 -8.4052 -0.6734 49 1 -1.9120 -7.1173 -1.6245 50 1 -3.2553 -8.6740 -3.2001 51 1 0.3458 -10.3404 -2.3886 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177402886.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:36 Heat of formation + Delta-G solvation = -74.007179 kcal Electronic energy + Delta-G solvation = -30556.719121 eV Core-core repulsion = 26490.151900 eV Total energy + Delta-G solvation = -4066.567221 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.56674 -40.82596 -39.05946 -37.67958 -37.21430 -36.27419 -34.25335 -33.98487 -31.98993 -30.79928 -30.01198 -29.42736 -27.14891 -25.85933 -25.20540 -23.88863 -22.91807 -22.49917 -21.55916 -20.81730 -20.16923 -19.13805 -18.95320 -18.81291 -17.54680 -17.18269 -16.84016 -16.57328 -16.40871 -16.32740 -15.83523 -15.72002 -15.48775 -15.30583 -15.12335 -14.95749 -14.48082 -14.43897 -14.22977 -14.00912 -13.63759 -13.45043 -13.29456 -12.99413 -12.81097 -12.74343 -12.43104 -12.06274 -11.99161 -11.91437 -11.85346 -11.84261 -11.79188 -11.71745 -11.62127 -11.39725 -11.34085 -11.18978 -10.95816 -10.54559 -9.87095 -9.67245 -9.02145 -7.97003 -5.26148 1.25029 1.46789 1.47986 1.57971 1.64154 1.92953 2.09258 2.55276 2.95045 3.21843 3.27660 3.36949 3.67288 3.76344 3.81997 3.89770 3.92075 4.05021 4.18644 4.26620 4.33974 4.46237 4.50423 4.54536 4.59715 4.62060 4.64722 4.68748 4.75060 4.76825 4.86982 4.93436 4.97132 4.98093 5.10386 5.19037 5.28595 5.32138 5.35403 5.39164 5.48426 5.51863 5.56362 5.60322 5.85108 6.14738 6.21991 6.25834 6.34864 7.04004 7.31845 7.47468 8.07270 8.30466 9.26812 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010944 B = 0.002745 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.815669 B =10196.188538 C =12003.155454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.248 4.248 8 H 0.075 0.925 9 N -0.748 5.748 10 C 0.153 3.847 11 C -0.119 4.119 12 C 0.127 3.873 13 N -0.593 5.593 14 C 0.099 3.901 15 C -0.108 4.108 16 C -0.127 4.127 17 C -0.126 4.126 18 C -0.123 4.123 19 C -0.115 4.115 20 C 0.501 3.499 21 O -0.571 6.571 22 C 0.101 3.899 23 H 0.158 0.842 24 C 0.101 3.899 25 N -0.728 5.728 26 C 0.698 3.302 27 O -0.636 6.636 28 N -0.712 5.712 29 H 0.252 0.748 30 H 0.374 0.626 31 H 0.033 0.967 32 H 0.009 0.991 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.145 0.855 49 H 0.080 0.920 50 H 0.440 0.560 51 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.117 -26.809 10.087 28.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.026 3.974 11 C -0.158 4.158 12 C 0.004 3.996 13 N -0.324 5.324 14 C -0.022 4.022 15 C -0.127 4.127 16 C -0.165 4.165 17 C -0.163 4.163 18 C -0.161 4.161 19 C -0.153 4.153 20 C 0.287 3.713 21 O -0.449 6.449 22 C -0.008 4.008 23 H 0.174 0.826 24 C -0.023 4.023 25 N -0.391 5.391 26 C 0.397 3.603 27 O -0.518 6.518 28 N -0.373 5.373 29 H 0.061 0.939 30 H 0.205 0.795 31 H 0.051 0.949 32 H 0.027 0.973 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.103 0.897 48 H 0.163 0.837 49 H 0.098 0.902 50 H 0.284 0.716 51 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -2.736 -26.827 9.076 28.452 hybrid contribution 0.409 1.259 -0.666 1.482 sum -2.327 -25.568 8.410 27.016 Atomic orbital electron populations 1.69814 1.06589 1.26086 1.59469 1.25585 0.96465 1.01146 1.03582 0.85067 0.78226 0.79670 0.76759 1.19074 1.22175 1.21598 1.19683 0.91533 0.85422 1.41294 0.90705 1.42583 1.05668 1.01314 1.89470 1.20704 0.94143 0.84855 0.97656 1.21843 0.98477 0.93770 1.01717 1.21268 0.91017 0.83762 1.03563 1.47980 1.44651 1.33304 1.06423 1.22259 0.98038 0.97813 0.84085 1.22182 0.99227 0.95629 0.95682 1.22574 1.01077 0.95166 0.97641 1.22496 0.99540 0.97149 0.97160 1.22375 0.99453 0.96076 0.98174 1.22137 1.02217 0.94845 0.96140 1.21221 0.83564 0.83060 0.83465 1.90772 1.58861 1.62080 1.33220 1.22398 0.93737 0.89918 0.94724 0.82564 1.22562 0.93110 0.98181 0.88479 1.45035 1.23042 1.42632 1.28419 1.16119 0.81514 0.80602 0.82113 1.90956 1.81449 1.50573 1.28788 1.44839 1.22203 1.43679 1.26610 0.93920 0.79460 0.94949 0.97330 0.94135 0.90524 0.87799 0.91898 0.88363 0.87110 0.91167 0.91250 0.93537 0.92102 0.91446 0.91488 0.90610 0.91600 0.89693 0.83705 0.90214 0.71633 0.72332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.35 13.06 21.65 0.28 -59.07 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 7 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.75 -38.43 5.60 -343.46 -1.92 -40.35 16 10 C 0.15 6.04 6.26 86.38 0.54 6.58 16 11 C -0.12 -3.57 5.65 30.59 0.17 -3.40 16 12 C 0.13 2.91 5.47 86.38 0.47 3.38 16 13 N -0.59 -10.12 2.22 -821.81 -1.83 -11.95 16 14 C 0.10 0.86 4.67 86.38 0.40 1.26 16 15 C -0.11 -0.92 3.21 -10.07 -0.03 -0.95 16 16 C -0.13 -1.29 5.54 31.67 0.18 -1.12 16 17 C -0.13 -1.08 6.91 31.88 0.22 -0.86 16 18 C -0.12 -0.74 6.83 31.67 0.22 -0.52 16 19 C -0.12 -0.67 6.46 31.32 0.20 -0.46 16 20 C 0.50 10.59 5.87 87.66 0.51 11.11 16 21 O -0.57 -18.81 16.34 -3.02 -0.05 -18.86 16 22 C 0.10 1.37 2.34 44.51 0.10 1.47 16 23 H 0.16 0.89 4.22 -2.39 -0.01 0.88 16 24 C 0.10 1.17 7.70 86.65 0.67 1.84 16 25 N -0.73 -12.49 6.37 -477.33 -3.04 -15.54 16 26 C 0.70 17.24 8.92 179.57 1.60 18.84 16 27 O -0.64 -21.77 18.05 -3.98 -0.07 -21.84 16 28 N -0.71 -13.46 5.78 -460.34 -2.66 -16.12 16 29 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 30 H 0.37 20.27 7.67 -92.70 -0.71 19.56 16 31 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.10 1.88 8.07 -2.39 -0.02 1.86 16 36 H 0.06 1.76 7.35 -2.39 -0.02 1.75 16 37 H 0.10 0.77 8.12 -2.38 -0.02 0.75 16 38 H 0.11 0.32 5.73 -2.39 -0.01 0.31 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.62 4.18 -2.39 -0.01 0.61 16 41 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 42 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 44 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 46 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.08 0.26 7.67 -2.39 -0.02 0.24 16 48 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 49 H 0.08 1.17 7.72 -2.39 -0.02 1.15 16 50 H 0.44 6.13 8.96 -92.71 -0.83 5.30 16 51 H 0.43 7.63 8.96 -92.71 -0.83 6.80 16 Total: -1.00 -84.29 402.13 -2.11 -86.39 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: -1.41 Total: 28.96 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: 6.56 Total: 20.09 kcal Atomic # 7 Polarization: -133.85 SS G_CDS: -9.17 Total: -143.03 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.12 Total: -40.70 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -84.29 -2.11 -86.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177402886.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.386 kcal (2) G-P(sol) polarization free energy of solvation -84.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds